Literature DB >> 23786321

In vitro and molecular modeling analysis of two mutant desert hedgehog proteins associated with 46,XY gonadal dysgenesis.

Josué Joram Castro1, Juan Pablo Méndez, Ramón Mauricio Coral-Vázquez, Marvin Antonio Soriano-Ursúa, Pablo Damian-Matsumura, Jesús Benítez-Granados, Haydee Rosas-Vargas, Patricia Canto.   

Abstract

Mutations of Desert hedgehog (DHH) have been associated to 46,XY pure gonadal dysgenesis (PGD) and to mixed gonadal dysgenesis (MGD); however, there have been no functional studies of mutations described in DHH. To determine if mutations p.L162P and Δ1086delG yield functional impairment, we performed in vitro and in silico analysis of both DHH mutants. In complementary DNA of DHH, we performed site-directed mutagenesis, which was confirmed by DNA sequencing. Protein extracts were obtained from HEK293cells transfected with different constructs and analyzed by Western blot; besides, densitometric analysis of chemiluminescent signals was performed. In addition, the structure of the wt-DHH and its two mutant proteins was inferred using in silico protein molecular modeling. In the Western blot analysis, we observed the absence of signal for p.L162P in DHH-N and a diminished signal for Δ1086delG in DHH-C, when compared to wt-DHH. Protein modeling showed notable conformational changes for the side chains of p.L162P, while the secondary structure was drastically modified in Δ1086delG, when compared to wt-DHH. To our knowledge, this is the first study focused to determine by in vitro studies, the effect of two specific mutations in DHH associated with 46,XY PGD and MGD. Our results suggest that both mutations have a deleterious effect on the expression of the DHH mutant proteins.

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Year:  2013        PMID: 23786321      PMCID: PMC3753129          DOI: 10.1089/dna.2013.2052

Source DB:  PubMed          Journal:  DNA Cell Biol        ISSN: 1044-5498            Impact factor:   3.311


  28 in total

1.  Scoring function for automated assessment of protein structure template quality.

Authors:  Yang Zhang; Jeffrey Skolnick
Journal:  Proteins       Date:  2004-12-01

2.  A heterozygous mutation in the desert hedgehog gene in patients with mixed gonadal dysgenesis.

Authors:  P Canto; F Vilchis; D Söderlund; E Reyes; J P Méndez
Journal:  Mol Hum Reprod       Date:  2006-01-03       Impact factor: 4.025

3.  Scalable molecular dynamics with NAMD.

Authors:  James C Phillips; Rosemary Braun; Wei Wang; James Gumbart; Emad Tajkhorshid; Elizabeth Villa; Christophe Chipot; Robert D Skeel; Laxmikant Kalé; Klaus Schulten
Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

4.  The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling.

Authors:  Konstantin Arnold; Lorenza Bordoli; Jürgen Kopp; Torsten Schwede
Journal:  Bioinformatics       Date:  2005-11-13       Impact factor: 6.937

5.  Prediction of protein stability changes for single-site mutations using support vector machines.

Authors:  Jianlin Cheng; Arlo Randall; Pierre Baldi
Journal:  Proteins       Date:  2006-03-01

6.  Hedgehog patterning activity: role of a lipophilic modification mediated by the carboxy-terminal autoprocessing domain.

Authors:  J A Porter; S C Ekker; W J Park; D P von Kessler; K E Young; C H Chen; Y Ma; A S Woods; R J Cotter; E V Koonin; P A Beachy
Journal:  Cell       Date:  1996-07-12       Impact factor: 41.582

7.  The mutational spectrum of holoprosencephaly-associated changes within the SHH gene in humans predicts loss-of-function through either key structural alterations of the ligand or its altered synthesis.

Authors:  Erich Roessler; Kenia B El-Jaick; Christèle Dubourg; Jorge I Vélez; Benjamin D Solomon; Daniel E Pineda-Alvarez; Felicitas Lacbawan; Nan Zhou; Maia Ouspenskaia; Aimée Paulussen; Hubert J Smeets; Ute Hehr; Claude Bendavid; Sherri Bale; Sylvie Odent; Véronique David; Maximilian Muenke
Journal:  Hum Mutat       Date:  2009-10       Impact factor: 4.878

8.  Autoproteolysis in hedgehog protein biogenesis.

Authors:  J J Lee; S C Ekker; D P von Kessler; J A Porter; B I Sun; P A Beachy
Journal:  Science       Date:  1994-12-02       Impact factor: 47.728

9.  I-TASSER server for protein 3D structure prediction.

Authors:  Yang Zhang
Journal:  BMC Bioinformatics       Date:  2008-01-23       Impact factor: 3.169

10.  SNAP predicts effect of mutations on protein function.

Authors:  Yana Bromberg; Guy Yachdav; Burkhard Rost
Journal:  Bioinformatics       Date:  2008-08-30       Impact factor: 6.937

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  2 in total

1.  46,XY Gonadal Dysgenesis due to a Homozygous Mutation in Desert Hedgehog (DHH) Identified by Exome Sequencing.

Authors:  Ralf Werner; Hartmut Merz; Wiebke Birnbaum; Louise Marshall; Tatjana Schröder; Benedikt Reiz; Jennifer M Kavran; Tobias Bäumer; Philipp Capetian; Olaf Hiort
Journal:  J Clin Endocrinol Metab       Date:  2015-04-30       Impact factor: 5.958

2.  Partial duplication of DHH causes minifascicular neuropathy: A novel mutation detection of DHH.

Authors:  Naoko Saito Sato; Risa Maekawa; Hiroyuki Ishiura; Jun Mitsui; Hiroya Naruse; Shin-Ichi Tokushige; Kazuma Sugie; Genshu Tate; Jun Shimizu; Jun Goto; Shoji Tsuji; Yasushi Shiio
Journal:  Ann Clin Transl Neurol       Date:  2017-05-22       Impact factor: 4.511

  2 in total

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