Literature DB >> 23784121

Visual analysis of DNA microarray data for accurate molecular identification of non-albicans Candida isolates from patients with candidemia episodes.

Michela De Luca Ferrari1, Mariângela Ribeiro Resende, Kanae Sakai, Yasunori Muraosa, Luzia Lyra, Tohru Gonoi, Yuzuru Mikami, Kenichiro Tominaga, Katsuhiko Kamei, Angelica Zaninelli Schreiber, Plinio Trabasso, Maria Luiza Moretti.   

Abstract

The performance of a visual slide-based DNA microarray for the identification of non-albicans Candida spp. was evaluated. Among 167 isolates that had previously been identified by Vitek 2, the agreement between DNA microarray and sequencing results was 97.6%. This DNA microarray platform showed excellent performance.

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Year:  2013        PMID： 23784121      PMCID： PMC3889773          DOI： 10.1128/JCM.01050-13

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  32 in total

1.  Seminested PCR for diagnosis of candidemia: comparison with culture, antigen detection, and biochemical methods for species identification.

Authors:  Suhail Ahmad; Zaiba Khan; Abu S Mustafa; Zia U Khan
Journal:  J Clin Microbiol       Date:  2002-07       Impact factor: 5.948

2.  Rapid detection of Candida albicans in clinical samples by DNA amplification of common regions from C. albicans-secreted aspartic proteinase genes.

Authors:  M Flahaut; D Sanglard; M Monod; J Bille; M Rossier
Journal:  J Clin Microbiol       Date:  1998-02       Impact factor: 5.948

3.  Detection of Candida species by polymerase chain reaction (PCR) in blood samples of experimentally infected mice and patients with suspected candidemia.

Authors:  Z U Khan; A S Mustafa
Journal:  Microbiol Res       Date:  2001       Impact factor: 5.415

4.  Simple and rapid detection of Candida albicans DNA in serum by PCR for diagnosis of invasive candidiasis.

Authors:  R Wahyuningsih; H J Freisleben; H G Sonntag; P Schnitzler
Journal:  J Clin Microbiol       Date:  2000-08       Impact factor: 5.948

Review 5.  Epidemiology of nosocomial fungal infections, with emphasis on Candida species.

Authors:  W R Jarvis
Journal:  Clin Infect Dis       Date:  1995-06       Impact factor: 9.079

6.  Nosocomial bloodstream infections. Secular trends in rates, mortality, and contribution to total hospital deaths.

Authors:  D Pittet; R P Wenzel
Journal:  Arch Intern Med       Date:  1995-06-12

7.  Nosocomial bloodstream infections in US hospitals: analysis of 24,179 cases from a prospective nationwide surveillance study.

Authors:  Hilmar Wisplinghoff; Tammy Bischoff; Sandra M Tallent; Harald Seifert; Richard P Wenzel; Michael B Edmond
Journal:  Clin Infect Dis       Date:  2004-07-15       Impact factor: 9.079

8.  Epidemiology of candidaemia in Europe: results of 28-month European Confederation of Medical Mycology (ECMM) hospital-based surveillance study.

Authors:  A M Tortorano; J Peman; H Bernhardt; L Klingspor; C C Kibbler; O Faure; E Biraghi; E Canton; K Zimmermann; S Seaton; R Grillot
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2004-03-17       Impact factor: 3.267

9.  Candidemia in French hospitals: incidence rates and characteristics.

Authors:  H Richet; P Roux; C Des Champs; Y Esnault; A Andremont
Journal:  Clin Microbiol Infect       Date:  2002-07       Impact factor: 8.067

10.  Epidemiology of invasive fungal infections in the intensive care unit: results of a multicenter Italian survey (AURORA Project).

Authors:  M T Montagna; G Caggiano; G Lovero; O De Giglio; C Coretti; T Cuna; R Iatta; M Giglio; L Dalfino; F Bruno; F Puntillo
Journal:  Infection       Date:  2013-03-06       Impact factor: 3.553
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  5 in total

1.  Visible DNA Microarray System as an Adjunctive Molecular Test in Identification of Pathogenic Fungi Directly from a Blood Culture Bottle.

Authors:  Lais Lovison Sturaro; Tohru Gonoi; Ariane Fidelis Busso-Lopes; Cibele Aparecida Tararam; Carlos Emilio Levy; Luzia Lyra; Plinio Trabasso; Angélica Zaninelli Schreiber; Katsuhiko Kamei; Maria Luiza Moretti
Journal:  J Clin Microbiol       Date:  2018-04-25       Impact factor: 5.948

2.  Multicenter evaluation of Candida QuickFISH BC for identification of Candida species directly from blood culture bottles.

Authors:  Ayman M Abdelhamed; Sean X Zhang; Tonya Watkins; Margie A Morgan; Fann Wu; Rebecca J Buckner; DeAnna D Fuller; Thomas E Davis; Hossein Salimnia; Marilynn R Fairfax; Paul R Lephart; Melinda D Poulter; Sarah B Regi; Michael R Jacobs
Journal:  J Clin Microbiol       Date:  2015-03-11       Impact factor: 5.948

3.  Isolation and drug susceptibility of Candida parapsilosis sensu lato and other species of C. parapsilosis complex from patients with blood stream infections and proposal of a novel LAMP identification method for the species.

Authors:  Plinio Trabasso; Tetsuhiro Matsuzawa; Renata Fagnani; Yasunori Muraosa; Kenichiro Tominaga; Mariangela Ribeiro Resende; Katsuhiko Kamei; Yuzuru Mikami; Angelica Zaninelli Schreiber; Maria Luiza Moretti
Journal:  Mycopathologia       Date:  2014-12-07       Impact factor: 2.574

4.  Dynamic time warping assessment of high-resolution melt curves provides a robust metric for fungal identification.

Authors:  Sha Lu; Gordana Mirchevska; Sayali S Phatak; Dongmei Li; Janos Luka; Richard A Calderone; William A Fonzi
Journal:  PLoS One       Date:  2017-03-06       Impact factor: 3.240

5.  Fusarium napiforme systemic infection: case report with molecular characterization and antifungal susceptibility tests.

Authors:  Marcela de Souza; Tetsuhiro Matsuzawa; Luzia Lyra; Ariane Fidelis Busso-Lopes; Tohru Gonoi; Angélica Zaninele Schreiber; Katsuhiko Kamei; Maria Luiza Moretti; Plínio Trabasso
Journal:  Springerplus       Date:  2014-08-30
  5 in total

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