Literature DB >> 23778141

Whole exome sequencing of adenoid cystic carcinoma.

Philip J Stephens1, Helen R Davies, Yoshitsugu Mitani, Peter Van Loo, Adam Shlien, Patrick S Tarpey, Elli Papaemmanuil, Angela Cheverton, Graham R Bignell, Adam P Butler, John Gamble, Stephen Gamble, Claire Hardy, Jonathan Hinton, Mingming Jia, Alagu Jayakumar, David Jones, Calli Latimer, Stuart McLaren, David J McBride, Andrew Menzies, Laura Mudie, Mark Maddison, Keiran Raine, Serena Nik-Zainal, Sarah O'Meara, Jon W Teague, Ignacio Varela, David C Wedge, Ian Whitmore, Scott M Lippman, Ultan McDermott, Michael R Stratton, Peter J Campbell, Adel K El-Naggar, P Andrew Futreal.   

Abstract

Adenoid cystic carcinoma (ACC) is a rare malignancy that can occur in multiple organ sites and is primarily found in the salivary gland. While the identification of recurrent fusions of the MYB-NFIB genes have begun to shed light on the molecular underpinnings, little else is known about the molecular genetics of this frequently fatal cancer. We have undertaken exome sequencing in a series of 24 ACC to further delineate the genetics of the disease. We identified multiple mutated genes that, combined, implicate chromatin deregulation in half of cases. Further, mutations were identified in known cancer genes, including PIK3CA, ATM, CDKN2A, SF3B1, SUFU, TSC1, and CYLD. Mutations in NOTCH1/2 were identified in 3 cases, and we identify the negative NOTCH signaling regulator, SPEN, as a new cancer gene in ACC with mutations in 5 cases. Finally, the identification of 3 likely activating mutations in the tyrosine kinase receptor FGFR2, analogous to those reported in ovarian and endometrial carcinoma, point to potential therapeutic avenues for a subset of cases.

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Year:  2013        PMID: 23778141      PMCID: PMC3999050          DOI: 10.1172/JCI67201

Source DB:  PubMed          Journal:  J Clin Invest        ISSN: 0021-9738            Impact factor:   14.808


  24 in total

1.  Exome sequencing identifies frequent mutation of ARID1A in molecular subtypes of gastric cancer.

Authors:  Kai Wang; Junsuo Kan; Siu Tsan Yuen; Stephanie T Shi; Kent Man Chu; Simon Law; Tsun Leung Chan; Zhengyan Kan; Annie S Y Chan; Wai Yin Tsui; Siu Po Lee; Siu Lun Ho; Anthony K W Chan; Grace H W Cheng; Peter C Roberts; Paul A Rejto; Neil W Gibson; David J Pocalyko; Mao Mao; Jiangchun Xu; Suet Yi Leung
Journal:  Nat Genet       Date:  2011-10-30       Impact factor: 38.330

2.  The C terminus of MINT forms homodimers and abrogates MINT-mediated transcriptional repression.

Authors:  Junlin Li; Junfeng Li; Xi Yang; Hongyan Qin; Peng Zhou; Yingmin Liang; Hua Han
Journal:  Biochim Biophys Acta       Date:  2005-02-17

3.  Clinically significant copy number alterations and complex rearrangements of MYB and NFIB in head and neck adenoid cystic carcinoma.

Authors:  Marta Persson; Ywonne Andrén; Christopher A Moskaluk; Henry F Frierson; Susanna L Cooke; Philip Andrew Futreal; Teresia Kling; Sven Nelander; Anders Nordkvist; Fredrik Persson; Göran Stenman
Journal:  Genes Chromosomes Cancer       Date:  2012-04-16       Impact factor: 5.006

4.  Prognosis and risk factors for early-stage adenoid cystic carcinoma of the major salivary glands.

Authors:  Mihir K Bhayani; Murat Yener; Adel El-Naggar; Adam Garden; Ehab Y Hanna; Randal S Weber; Michael E Kupferman
Journal:  Cancer       Date:  2011-10-21       Impact factor: 6.860

5.  Deletion of 1p32-p36 is the most frequent genetic change and poor prognostic marker in adenoid cystic carcinoma of the salivary glands.

Authors:  Pulivarthi H Rao; Diana Roberts; Yi-Jue Zhao; Diana Bell; Charles P Harris; Randal S Weber; Adel K El-Naggar
Journal:  Clin Cancer Res       Date:  2008-08-15       Impact factor: 12.531

6.  Recurrent fusion of MYB and NFIB transcription factor genes in carcinomas of the breast and head and neck.

Authors:  Marta Persson; Ywonne Andrén; Joachim Mark; Hugo M Horlings; Fredrik Persson; Göran Stenman
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-19       Impact factor: 11.205

Review 7.  FGFs, their receptors, and human limb malformations: clinical and molecular correlations.

Authors:  Andrew O M Wilkie; Susannah J Patey; Shih-Hsin Kan; Ans M W van den Ouweland; Ben C J Hamel
Journal:  Am J Med Genet       Date:  2002-10-15

8.  FGFR2 mutations are rare across histologic subtypes of ovarian cancer.

Authors:  Sara A Byron; Michael G Gartside; Candice L Wellens; Paul J Goodfellow; Michael J Birrer; Ian G Campbell; Pamela M Pollock
Journal:  Gynecol Oncol       Date:  2010-01-27       Impact factor: 5.482

9.  The landscape of cancer genes and mutational processes in breast cancer.

Authors:  Philip J Stephens; Patrick S Tarpey; Helen Davies; Peter Van Loo; Chris Greenman; David C Wedge; Serena Nik-Zainal; Sancha Martin; Ignacio Varela; Graham R Bignell; Lucy R Yates; Elli Papaemmanuil; David Beare; Adam Butler; Angela Cheverton; John Gamble; Jonathan Hinton; Mingming Jia; Alagu Jayakumar; David Jones; Calli Latimer; King Wai Lau; Stuart McLaren; David J McBride; Andrew Menzies; Laura Mudie; Keiran Raine; Roland Rad; Michael Spencer Chapman; Jon Teague; Douglas Easton; Anita Langerød; Ming Ta Michael Lee; Chen-Yang Shen; Benita Tan Kiat Tee; Bernice Wong Huimin; Annegien Broeks; Ana Cristina Vargas; Gulisa Turashvili; John Martens; Aquila Fatima; Penelope Miron; Suet-Feung Chin; Gilles Thomas; Sandrine Boyault; Odette Mariani; Sunil R Lakhani; Marc van de Vijver; Laura van 't Veer; John Foekens; Christine Desmedt; Christos Sotiriou; Andrew Tutt; Carlos Caldas; Jorge S Reis-Filho; Samuel A J R Aparicio; Anne Vincent Salomon; Anne-Lise Børresen-Dale; Andrea L Richardson; Peter J Campbell; P Andrew Futreal; Michael R Stratton
Journal:  Nature       Date:  2012-05-16       Impact factor: 49.962

10.  Somatic SF3B1 mutation in myelodysplasia with ring sideroblasts.

Authors:  E Papaemmanuil; M Cazzola; J Boultwood; L Malcovati; P Vyas; D Bowen; A Pellagatti; J S Wainscoat; E Hellstrom-Lindberg; C Gambacorti-Passerini; A L Godfrey; I Rapado; A Cvejic; R Rance; C McGee; P Ellis; L J Mudie; P J Stephens; S McLaren; C E Massie; P S Tarpey; I Varela; S Nik-Zainal; H R Davies; A Shlien; D Jones; K Raine; J Hinton; A P Butler; J W Teague; E J Baxter; J Score; A Galli; M G Della Porta; E Travaglino; M Groves; S Tauro; N C Munshi; K C Anderson; A El-Naggar; A Fischer; V Mustonen; A J Warren; N C P Cross; A R Green; P A Futreal; M R Stratton; P J Campbell
Journal:  N Engl J Med       Date:  2011-09-26       Impact factor: 91.245

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  107 in total

1.  Expression and clinical significance of MAGE and NY-ESO-1 cancer-testis antigens in adenoid cystic carcinoma of the head and neck.

Authors:  Johannes A Veit; Daniela Heine; Julia Thierauf; Jochen Lennerz; Subasch Shetty; Patrick J Schuler; Theresa Whiteside; Dirk Beutner; Moritz Meyer; Inga Grünewald; Gerd Ritter; Sacha Gnjatic; Andrew G Sikora; Thomas K Hoffmann; Simon Laban
Journal:  Head Neck       Date:  2016-02-13       Impact factor: 3.147

2.  Genetic Characterization of Adenoid Cystic Carcinoma of the Minor Salivary Glands: A Potential Familial Occurrence in First-Degree Relatives.

Authors:  Hani Ibrahim Channir; Thomas van Overeem Hansen; Simon Andreasen; Christina Westmose Yde; Katalin Kiss; Birgitte Wittenborg Charabi
Journal:  Head Neck Pathol       Date:  2017-02-16

3.  FGFR2 mutations are associated with poor outcomes in endometrioid endometrial cancer: An NRG Oncology/Gynecologic Oncology Group study.

Authors:  Yvette W Jeske; Shamshad Ali; Sara A Byron; Feng Gao; Robert S Mannel; Rahel G Ghebre; Paul A DiSilvestro; Shashikant B Lele; Michael L Pearl; Amy P Schmidt; Heather A Lankes; Nilsa C Ramirez; Golnar Rasty; Matthew Powell; Paul J Goodfellow; Pamela M Pollock
Journal:  Gynecol Oncol       Date:  2017-03-15       Impact factor: 5.482

Review 4.  Genetic alterations in salivary gland cancers.

Authors:  Linda X Yin; Patrick K Ha
Journal:  Cancer       Date:  2016-02-29       Impact factor: 6.860

5.  Discovery of biomarkers predictive of GSI response in triple-negative breast cancer and adenoid cystic carcinoma.

Authors:  Alexander Stoeck; Serguei Lejnine; Andrew Truong; Li Pan; Hongfang Wang; Chongzhi Zang; Jing Yuan; Chris Ware; John MacLean; Philip W Garrett-Engele; Michael Kluk; Jason Laskey; Brian B Haines; Christopher Moskaluk; Leigh Zawel; Stephen Fawell; Gary Gilliland; Theresa Zhang; Brandon E Kremer; Birgit Knoechel; Bradley E Bernstein; Warren S Pear; X Shirley Liu; Jon C Aster; Sriram Sathyanarayanan
Journal:  Cancer Discov       Date:  2014-08-07       Impact factor: 39.397

6.  Salivary Gland Cancer Patient-Derived Xenografts Enable Characterization of Cancer Stem Cells and New Gene Events Associated with Tumor Progression.

Authors:  Stephen B Keysar; Justin R Eagles; Bettina Miller; Brian C Jackson; Farshad N Chowdhury; Julie Reisinger; Tugs-Saikhan Chimed; Phuong N Le; John J Morton; Hilary L Somerset; Marileila Varella-Garcia; Aik-Choon Tan; John I Song; Daniel W Bowles; Mary E Reyland; Antonio Jimeno
Journal:  Clin Cancer Res       Date:  2018-03-19       Impact factor: 12.531

Review 7.  The potential for liquid biopsies in head and neck cancer.

Authors:  Matthew E Spector; Janice L Farlow; Catherine T Haring; J Chad Brenner; Andrew C Birkeland
Journal:  Discov Med       Date:  2018-05       Impact factor: 2.970

8.  A phase II study of axitinib (AG-013736) in patients with incurable adenoid cystic carcinoma.

Authors:  A L Ho; L Dunn; E J Sherman; M G Fury; S S Baxi; R Chandramohan; S Dogan; L G T Morris; G D Cullen; S Haque; C S Sima; A Ni; C R Antonescu; N Katabi; D G Pfister
Journal:  Ann Oncol       Date:  2016-08-26       Impact factor: 32.976

9.  Splicing factor 3B1 hypomethylation is associated with altered SF3B1 transcript expression in older humans.

Authors:  Alice C Holly; Luke C Pilling; Dena Hernandez; Benjamin P Lee; Andrew Singleton; Luigi Ferrucci; David Melzer; Lorna W Harries
Journal:  Mech Ageing Dev       Date:  2014-01-23       Impact factor: 5.432

10.  Spatio-Temporal Genomic Heterogeneity, Phylogeny, and Metastatic Evolution in Salivary Adenoid Cystic Carcinoma.

Authors:  Bin Liu; Yoshitsugu Mitani; Xiayu Rao; Mark Zafereo; Jianjun Zhang; Jianhua Zhang; P Andrew Futreal; Guillermina Lozano; Adel K El-Naggar
Journal:  J Natl Cancer Inst       Date:  2017-10-01       Impact factor: 13.506

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