Literature DB >> 23775173

MilxXplore: a web-based system to explore large imaging datasets.

P Bourgeat1, V Dore, V L Villemagne, C C Rowe, O Salvado, J Fripp.   

Abstract

OBJECTIVE: As large-scale medical imaging studies are becoming more common, there is an increasing reliance on automated software to extract quantitative information from these images. As the size of the cohorts keeps increasing with large studies, there is a also a need for tools that allow results from automated image processing and analysis to be presented in a way that enables fast and efficient quality checking, tagging and reporting on cases in which automatic processing failed or was problematic.
MATERIALS AND METHODS: MilxXplore is an open source visualization platform, which provides an interface to navigate and explore imaging data in a web browser, giving the end user the opportunity to perform quality control and reporting in a user friendly, collaborative and efficient way. DISCUSSION: Compared to existing software solutions that often provide an overview of the results at the subject's level, MilxXplore pools the results of individual subjects and time points together, allowing easy and efficient navigation and browsing through the different acquisitions of a subject over time, and comparing the results against the rest of the population.
CONCLUSIONS: MilxXplore is fast, flexible and allows remote quality checks of processed imaging data, facilitating data sharing and collaboration across multiple locations, and can be easily integrated into a cloud computing pipeline. With the growing trend of open data and open science, such a tool will become increasingly important to share and publish results of imaging analysis.

Keywords:  Image processing; Reporting

Mesh:

Year:  2013        PMID: 23775173      PMCID: PMC3822116          DOI: 10.1136/amiajnl-2012-001545

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  13 in total

1.  The Extensible Neuroimaging Archive Toolkit: an informatics platform for managing, exploring, and sharing neuroimaging data.

Authors:  Daniel S Marcus; Timothy R Olsen; Mohana Ramaratnam; Randy L Buckner
Journal:  Neuroinformatics       Date:  2007

Review 2.  FreeSurfer.

Authors:  Bruce Fischl
Journal:  Neuroimage       Date:  2012-01-10       Impact factor: 6.556

3.  Mapping the human connectome.

Authors:  Arthur W Toga; Kristi A Clark; Paul M Thompson; David W Shattuck; John Darrell Van Horn
Journal:  Neurosurgery       Date:  2012-07       Impact factor: 4.654

Review 4.  The Parkinson Progression Marker Initiative (PPMI).

Authors: 
Journal:  Prog Neurobiol       Date:  2011-09-14       Impact factor: 10.885

5.  Ways toward an early diagnosis in Alzheimer's disease: the Alzheimer's Disease Neuroimaging Initiative (ADNI).

Authors:  Susanne G Mueller; Michael W Weiner; Leon J Thal; Ronald C Petersen; Clifford R Jack; William Jagust; John Q Trojanowski; Arthur W Toga; Laurel Beckett
Journal:  Alzheimers Dement       Date:  2005-07       Impact factor: 21.566

6.  The Australian Imaging, Biomarkers and Lifestyle (AIBL) study of aging: methodology and baseline characteristics of 1112 individuals recruited for a longitudinal study of Alzheimer's disease.

Authors:  Kathryn A Ellis; Ashley I Bush; David Darby; Daniela De Fazio; Jonathan Foster; Peter Hudson; Nicola T Lautenschlager; Nat Lenzo; Ralph N Martins; Paul Maruff; Colin Masters; Andrew Milner; Kerryn Pike; Christopher Rowe; Greg Savage; Cassandra Szoeke; Kevin Taddei; Victor Villemagne; Michael Woodward; David Ames
Journal:  Int Psychogeriatr       Date:  2009-05-27       Impact factor: 3.878

Review 7.  FSL.

Authors:  Mark Jenkinson; Christian F Beckmann; Timothy E J Behrens; Mark W Woolrich; Stephen M Smith
Journal:  Neuroimage       Date:  2011-09-16       Impact factor: 6.556

Review 8.  SPM: a history.

Authors:  John Ashburner
Journal:  Neuroimage       Date:  2011-10-17       Impact factor: 6.556

9.  A novel mesh processing based technique for 3D plant analysis.

Authors:  Anthony Paproki; Xavier Sirault; Scott Berry; Robert Furbank; Jurgen Fripp
Journal:  BMC Plant Biol       Date:  2012-05-03       Impact factor: 4.215

10.  Next generation sequence analysis and computational genomics using graphical pipeline workflows.

Authors:  Federica Torri; Ivo D Dinov; Alen Zamanyan; Sam Hobel; Alex Genco; Petros Petrosyan; Andrew P Clark; Zhizhong Liu; Paul Eggert; Jonathan Pierce; James A Knowles; Joseph Ames; Carl Kesselman; Arthur W Toga; Steven G Potkin; Marquis P Vawter; Fabio Macciardi
Journal:  Genes (Basel)       Date:  2012-08-30       Impact factor: 4.096

View more
  5 in total

1.  Trends in biomedical informatics: automated topic analysis of JAMIA articles.

Authors:  Dong Han; Shuang Wang; Chao Jiang; Xiaoqian Jiang; Hyeon-Eui Kim; Jimeng Sun; Lucila Ohno-Machado
Journal:  J Am Med Inform Assoc       Date:  2015-11       Impact factor: 4.497

2.  Biomedical imaging informatics in the era of precision medicine: progress, challenges, and opportunities.

Authors:  William Hsu; Mia K Markey; May D Wang
Journal:  J Am Med Inform Assoc       Date:  2013 Nov-Dec       Impact factor: 4.497

Review 3.  Big data - smart health strategies. Findings from the yearbook 2014 special theme.

Authors:  V Koutkias; F Thiessard
Journal:  Yearb Med Inform       Date:  2014-08-15

4.  Automating Quantitative Measures of an Established Conventional MRI Scoring System for Preterm-Born Infants Scanned between 29 and 47 Weeks' Postmenstrual Age.

Authors:  L van Eijk; M Seidel; K Pannek; J M George; S Fiori; A Guzzetta; A Coulthard; J Bursle; R S Ware; D Bradford; S Rose; P B Colditz; R N Boyd; J Fripp
Journal:  AJNR Am J Neuroradiol       Date:  2021-08-19       Impact factor: 4.966

5.  MIRMAID: A Content Management System for Medical Image Analysis Research.

Authors:  Panagiotis D Korfiatis; Timothy L Kline; Daniel J Blezek; Steve G Langer; William J Ryan; Bradley J Erickson
Journal:  Radiographics       Date:  2015-08-18       Impact factor: 5.333

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.