| Literature DB >> 23774837 |
Marta Kubiczak1, Grzegorz P Walkowiak, Ewa Nowak-Markwitz, Anna Jankowska.
Abstract
Human chorionic gonadotropin beta subunit (CGB) is a marker of pregnancy as well as trophoblastic and nontrophoblastic tumors. CGB is encoded by a cluster of six genes, of which type II genes (CGB3/9, 5 and 8) have been shown to be upregulated in relation to type I genes (CGB6/7) in both placentas and tumors. Recent studies revealed that CGB1 and CGB2, originally considered as pseudogenes, might also be active, however, the protein products of these genes have not yet been identified. Our study demonstrates the presence of CGB1 and CGB2 transcripts in ovarian carcinomas. While CGB1 and CGB2 gene activation was not detected in normal ovaries lacking cancerous development, our study demonstrates the presence of CGB1 and CGB2 transcripts in 41% of analyzed ovarian cancer cases.Entities:
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Year: 2013 PMID: 23774837 PMCID: PMC3709805 DOI: 10.3390/ijms140612650
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Figure 1Relative expression of total CGB genes in normal ovarian tissues, ovarian carcinomas and term placentas. Results are presented as the logarithm to the base 10.
CGB gene expression pattern within studied groups. For CGB total and CGB3-9 assays, median and extent of range (maximum divided by minimum) are presented. For CGB1-2 assay (data not normally distributed) mean and standard deviation are shown.
| Group | CGB total | CGB3-9 | CGB1-2 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Number/% of positive samples | Median | Maximum/minimum | Number/% of positive samples | Median | Maximum/minimum | Number/% of positive samples | Mean | Standard deviation | ||
| Ovaries | 9 | 9/100% | 3.51 × 10−3 | 40X | 9/100% | 1.31 × 10−5 | 5X | 0/0% | n/a | n/a |
| Ovarian cancer tissues | 32 | 32/100% | 6.48 × 10−3 | 5747X | 32/100% | 2.65 × 10−4 | 250896X | 13/40% | 7.27 × 10−5 | 0.0001722 |
| Term placentas | 12 | 12/100% | 44.3 | 1164X | 12/100% | 22.1 | 271X | 6/50% | 1.84 × 10−4 | 0.0003322 |
Figure 2Relative expression of CGB3-9 genes in normal ovarian tissues, ovarian carcinomas and term placentas. Results are presented as the logarithm to the base 10.
Figure 3Relative expression of CGB1-2 genes in ovarian carcinomas and term placentas. None of studied healthy ovaries exhibited expression of CGB1-2. Results are presented as the logarithm to the base 10.
Figure 4Categorized histogram of CGB1-2 relative expression in tissues of normal ovaries, ovarian carcinomas and term placentas. Results are presented as the logarithm to the base 10. Data not normally distributed.
The histological subtype and grading of studied ovarian carcinomas.
| Ovarian carcinomas by histotype and grade | ||||
|---|---|---|---|---|
|
| ||||
| Tumor grade | Serous | Endometrioid | Mucinous | Clear cell |
| G1 | 1 | 0 | 2 | 0 |
| G2 | 8 | 2 | 1 | 1 |
| G3 | 15 | 1 | 0 | 0 |
| not determined | 1 | 0 | 0 | 0 |
| total | 25 | 3 | 3 | 1 |
Primers and hydrolysis probes used in qPCR.
| Gene | Hydrolysis probe 5′→3′ | Sequence of primers 5′→3′ | NCBI Reference Sequence | |
|---|---|---|---|---|
| Forward primer | Reverse primer | |||
| 6FAM-ccgaggtytaaagccaggtacacsaggc-BBQ | gtgtcsagctcacyccagcatccta | agcagcccctggaacatct | CGB 3 NM_000737.3 | |
| 6FAM-tcactccctgtctcactcccccacg-BBQ | ggtccgctgactcyggc | cagcagcagcccctttgac | CGB 1 NM_033377.1 | |
| n/a | tactgccccaccatgacc | cacggcgtaggagaccac | CGB 1 NM_033377.1 | |
| n/a | tgaagagctattgtaatgaccagt | caaatccaacaaagtctggc | HPRT NM_0001942 | |
CGB3-9 and CGB1-2 hydrolysis probe were designed by Tib Molbiol;
Code for degenerated base positions: S-G/C; Y-C/T.