Literature DB >> 23773860

Genomics and transcriptomics in drug discovery.

Joaquin Dopazo1.   

Abstract

The popularization of genomic high-throughput technologies is causing a revolution in biomedical research and, particularly, is transforming the field of drug discovery. Systems biology offers a framework to understand the extensive human genetic heterogeneity revealed by genomic sequencing in the context of the network of functional, regulatory and physical protein-drug interactions. Thus, approaches to find biomarkers and therapeutic targets will have to take into account the complex system nature of the relationships of the proteins with the disease. Pharmaceutical companies will have to reorient their drug discovery strategies considering the human genetic heterogeneity. Consequently, modeling and computational data analysis will have an increasingly important role in drug discovery.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23773860     DOI: 10.1016/j.drudis.2013.06.003

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN: 1359-6446            Impact factor:   7.851


  21 in total

Review 1.  Deep learning in pharmacogenomics: from gene regulation to patient stratification.

Authors:  Alexandr A Kalinin; Gerald A Higgins; Narathip Reamaroon; Sayedmohammadreza Soroushmehr; Ari Allyn-Feuer; Ivo D Dinov; Kayvan Najarian; Brian D Athey
Journal:  Pharmacogenomics       Date:  2018-04-26       Impact factor: 2.533

2.  Individualized Drug Repositioning For Rheumatoid Arthritis Using Weighted Kolmogorov-Smirnov Algorithm.

Authors:  Ru-Yin Hu; Xiao-Bin Tian; Bo Li; Rui Luo; Bin Zhang; Jin-Min Zhao
Journal:  Pharmgenomics Pers Med       Date:  2019-12-11

3.  Assessing the impact of mutations found in next generation sequencing data over human signaling pathways.

Authors:  Rosa D Hernansaiz-Ballesteros; Francisco Salavert; Patricia Sebastián-León; Alejandro Alemán; Ignacio Medina; Joaquín Dopazo
Journal:  Nucleic Acids Res       Date:  2015-04-16       Impact factor: 16.971

4.  Babelomics 5.0: functional interpretation for new generations of genomic data.

Authors:  Roberto Alonso; Francisco Salavert; Francisco Garcia-Garcia; Jose Carbonell-Caballero; Marta Bleda; Luz Garcia-Alonso; Alba Sanchis-Juan; Daniel Perez-Gil; Pablo Marin-Garcia; Ruben Sanchez; Cankut Cubuk; Marta R Hidalgo; Alicia Amadoz; Rosa D Hernansaiz-Ballesteros; Alejandro Alemán; Joaquin Tarraga; David Montaner; Ignacio Medina; Joaquin Dopazo
Journal:  Nucleic Acids Res       Date:  2015-04-20       Impact factor: 16.971

5.  Systems toxicology: from basic research to risk assessment.

Authors:  Shana J Sturla; Alan R Boobis; Rex E FitzGerald; Julia Hoeng; Robert J Kavlock; Kristin Schirmer; Maurice Whelan; Martin F Wilks; Manuel C Peitsch
Journal:  Chem Res Toxicol       Date:  2014-01-21       Impact factor: 3.739

6.  Understanding disease mechanisms with models of signaling pathway activities.

Authors:  Patricia Sebastian-Leon; Enrique Vidal; Pablo Minguez; Ana Conesa; Sonia Tarazona; Alicia Amadoz; Carmen Armero; Francisco Salavert; Antonio Vidal-Puig; David Montaner; Joaquín Dopazo
Journal:  BMC Syst Biol       Date:  2014-10-25

Review 7.  Application of Omics Technologies for Evaluation of Antibacterial Mechanisms of Action of Plant-Derived Products.

Authors:  Bruno S Dos Santos; Luís C N da Silva; Túlio D da Silva; João F S Rodrigues; Marcos A G Grisotto; Maria T Dos Santos Correia; Thiago H Napoleão; Márcia V da Silva; Patrícia M G Paiva
Journal:  Front Microbiol       Date:  2016-09-27       Impact factor: 5.640

8.  Using activation status of signaling pathways as mechanism-based biomarkers to predict drug sensitivity.

Authors:  Alicia Amadoz; Patricia Sebastian-Leon; Enrique Vidal; Francisco Salavert; Joaquin Dopazo
Journal:  Sci Rep       Date:  2015-12-18       Impact factor: 4.379

9.  267 Spanish Exomes Reveal Population-Specific Differences in Disease-Related Genetic Variation.

Authors:  Joaquín Dopazo; Alicia Amadoz; Marta Bleda; Luz Garcia-Alonso; Alejandro Alemán; Francisco García-García; Juan A Rodriguez; Josephine T Daub; Gerard Muntané; Antonio Rueda; Alicia Vela-Boza; Francisco J López-Domingo; Javier P Florido; Pablo Arce; Macarena Ruiz-Ferrer; Cristina Méndez-Vidal; Todd E Arnold; Olivia Spleiss; Miguel Alvarez-Tejado; Arcadi Navarro; Shomi S Bhattacharya; Salud Borrego; Javier Santoyo-López; Guillermo Antiñolo
Journal:  Mol Biol Evol       Date:  2016-01-13       Impact factor: 16.240

10.  Genetic Analysis with the Immunochip Platform in Behçet Disease. Identification of Residues Associated in the HLA Class I Region and New Susceptibility Loci.

Authors:  Lourdes Ortiz-Fernández; Francisco-David Carmona; Marco-Antonio Montes-Cano; José-Raúl García-Lozano; Marta Conde-Jaldón; Norberto Ortego-Centeno; María Jesús Castillo; Gerard Espinosa; Genaro Graña-Gil; Juan Sánchez-Bursón; María Rosa Juliá; Roser Solans; Ricardo Blanco; Ana-Celia Barnosi-Marín; Ricardo Gómez de la Torre; Patricia Fanlo; Mónica Rodríguez-Carballeira; Luis Rodríguez-Rodríguez; Teresa Camps; Santos Castañeda; Juan-Jose Alegre-Sancho; Javier Martín; María Francisca González-Escribano
Journal:  PLoS One       Date:  2016-08-22       Impact factor: 3.240

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