| Literature DB >> 23771757 |
Branka Gršković1, Dario Zrnec, Maja Popović, Maja Jelena Petek, Dragan Primorac, Gordan Mršić.
Abstract
AIM: To examine the influence of ultraviolet C (UVC) radiation on blood, saliva, semen, and naked DNA samples for preventing DNA cross-contamination on working surfaces in laboratories.Entities:
Mesh:
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Year: 2013 PMID: 23771757 PMCID: PMC3692334 DOI: 10.3325/cmj.2013.54.263
Source DB: PubMed Journal: Croat Med J ISSN: 0353-9504 Impact factor: 1.351
Experimental design*
| Groups | Sample type | Initial DNA concentration (ng/µL) | Dilutions of initial DNA concentration | Volume (µL) | Location | Irradiation time (min, h) | UVC dose (mJ/cm2) |
|---|---|---|---|---|---|---|---|
| D+UVC only-UVC | Naked DNA | 0.1 | 1:10, 1:20, 1:50 | 10 | laboratory | 2,5,15,30,45 min; 1,4,8,16 h | 9-4380 |
| Diluted blood | 0.1 | 1:10, 1:20, 1:50 | 10 | laboratory | 1 h | 275 | |
| Diluted saliva | 0.1 | 1:10, 1:20, 1:50 | 10 | laboratory | 1 h | 275 | |
| Diluted semen | 0.1 | 1:10, 1:20, 1:50 | 10 | laboratory | 1 h | 275 | |
| Undiluted blood | 2.02 | / | 10 | laboratory | 1,4,8,16,24,32,42,54,66,78,90 h | 275-24625 | |
| Undiluted saliva | 0.58 | / | 10 | laboratory | 1,4,8,16,24,32,42,54,66,78,90 h | 275-24625 | |
| Undiluted semen | 20.55 | / | 10 | laboratory | 1,4,8,16,24,32,42,54,66,78,90 h | 275-24625 | |
| only-UVC | Undiluted blood | 2.02 | / | 10,5,3,1 | laminar | Equivalent of: 42,66,90,120 180 250 h | 11490-68400 |
| Undiluted semen | 20.55 | / | 10,5,3,1 | laminar | Equivalent of: 42,66,90,120 180 250 h | 11490-68400 |
*Abbreviations: D+UVC – decontaminated samples exposed to UVC radiation; only-UVC – samples exposed to UVC radiation without decontamination.
Loci designation, number of alleles and repeats, and mean of allele length for each locus using AmpFlSTR® NGM™ PCR Amplification Kit
| Loci designation | Number of alleles | Number of repeats | Mean of allele length (bp) ± standard deviation |
|---|---|---|---|
| D10S1248 | 11 | 8-18 | 76.64 ± 0.045 - 117.21 ± 0.044 |
| D22S1045 | 12 | 8-19 | 79.99 ± 0.058 - 113.13 ± 0.059 |
| D2S441 | 8 | 9-16 | 80.29 ± 0.054 - 104.53 ± 0.056 |
| Amelogenin | 2 | / | 100.54-100.68 ± 0.064;
106.2-106.34 ± 0.061 |
| D8S1179 | 12 | 8-19 | 123.54 ± 0.068 - 170.15 ± 0.096 |
| D19S433 | 15 | 9-17.2 | 127.1 ± 0.05 - 161.66 ± 0.047 |
| D3S1358 | 8 | 12-19 | 134.88 ± 0.064 - 164.06 ± 0.079 |
| vWA | 14 | 11-24 | 153.74 ± 0.065 - 206.12 ± 0.063 |
| D1S1656 | 16 | 9-20.3 | 175.77 ± 0.09 - 221.56 ± 0.064 |
| TH01 | 10 | 4-13.3 | 181.53 ± 0.065 - 219.75 ± 0.047 |
| D21S11 | 24 | 24-38 | 185.02 ± 0.069 - 240.71 ± 0.052 |
| D16S539 | 9 | 5-15 | 228.68 ± 0.05 - 268.99 ± 0.054 |
| D12S391 | 15 | 14-27 | 229.97 ± 0.056 - 281.45 ± 0.066 |
| FGA | 28 | 17-51.2 | 233.22 ± 0.044 - 366.96 ± 0.052 |
| D18S51 | 23 | 7-27 | 262.24 ± 0.068 - 344.5 ± 0.077 |
| D2S1338 | 14 | 15-28 | 289.59 ± 0.054 - 343.05 ± 0.061 |
Initial volumes, time of exposure to UVC radiation, DNA concentrations, the number of correctly detected alleles on genetic loci, and approximate doses of UVC radiation for undiluted blood and semen in the laboratory*
| Test group | Sample volume (µL) | Time of exposure to UVC radiation (h) | DNA concentration (ng/µL) (blood) | Number of detected alleles on genetic loci (blood) | DNA concentration (ng/µL) (semen) | Number of detected alleles on genetic loci (semen) | Dose of UVC radiation (mJ/cm2) |
|---|---|---|---|---|---|---|---|
| D+UVC | 10 | 1 | 0.06 | 15/16 | 0.04 | 8/16 | 275 |
| 10 | 4 | 0.04 | 14/16 | 0.03 | 6/16 | 1095 | |
| 10 | 8 | 0.03 | 14/16 | - | - | 2190 | |
| only-UVC | 10 | 1 | 1.05 | 16/16 | 2.31 | 16/16 | 275 |
| 10 | 4 | 0.67 | 16/16 | 3.96 | 16/16 | 1095 | |
| 10 | 8 | 0.76 | 16/16 | 3.19 | 16/16 | 2190 | |
| 10 | 16 | 0.49 | 16/16 | 0.96 | 16/16 | 4380 | |
| 10 | 24 | 0.24 | 16/16 | 2.3 | 16/16 | 6570 | |
| 10 | 32 | 0.2 | 16/16 | 1.77 | 16/16 | 8755 | |
| 10 | 42 | 0.13 | 16/16 | 1.73 | 16/16 | 11490 | |
| 10 | 54 | 0.09 | 16/16 | 0.84 | 15/16 | 14775 | |
| 10 | 66 | 0.07 | 16/16 | 1.61 | 16/16 | 18060 | |
| 10 | 78 | 0.04 | 16/16 | 1.29 | 15/16 | 21340 | |
| 10 | 90 | 0.05 | 16/16 | 1.21 | 14/16 | 24625 |
*Abbreviations: D+UVC – decontaminated samples exposed to UVC radiation; only-UVC -– samples exposed to UVC radiation without decontamination.
Initial volumes, time of exposure to UVC radiation, DNA concentrations, the number of correctly detected alleles on genetic loci, and approximate doses of UVC radiation for undiluted saliva samples from only-UVC group
| Volume of saliva (µL) | Time of exposure to UVC radiation (h) | DNA concentration (ng/µL) | Number of correctly detected alleles on genetic loci | Dose of UVC radiation (mJ/cm2) |
|---|---|---|---|---|
| 10 | 1 | 0.49 | 16/16 | 275 |
| 8 | 0.15 | 9/16 | 2190 | |
| 16 | 0.11 | 6/16 | 4380 | |
| 42 | 0.07 | 2/16 | 11490 |
Initial volumes, time of exposure to UVC radiation, DNA concentrations, the number of correctly detected alleles on genetic loci, and approximate doses of UVC radiation for undiluted blood and semen from only-UVC group in the laminar
| Volume of blood or semen (µL) | Time of exposure to UVC radiation (h) | Dose of UVC radiation (mJ/cm2) | DNA concentration (ng/µL) (blood) | Number of correctly detected alleles on genetic loci (blood) | DNA concentration (ng/µL)(semen) | Number of correctly detected alleles on genetic loci (semen) |
|---|---|---|---|---|---|---|
| 10 | 42 | 11490 | 0.28 | 16/16 | 1.52 | 15/16 |
| 90 | 24625 | 0.09 | 16/16 | 1.2 | 13/16 | |
| 180 | 49250 | 0.06 | 16/16 | 0.92 | 9/16 | |
| 250 | 68400 | 0.03 | 16/16 | 0.47 | 6/16 | |
| 5 | 42 | 11490 | 0.1 | 16/16 | 0.61 | 12/16 |
| 90 | 24625 | 0.06 | 16/16 | 0.41 | 9/16 | |
| 180 | 49250 | 0.03 | 13/16 | 0.16 | 4/16 | |
| 250 | 68400 | 0.02 | 12/16 | 0.2 | 4/16 | |
| 3 | 42 | 11490 | 0.09 | 10/16 | 0.23 | 8/16 |
| 90 | 24625 | 0.03 | 1/16 | 0.24 | 6/16 | |
| 180 | 49250 | 0.03 | 1/16 | 0.09 | 3/16 | |
| 250 | 68400 | 0.01 | 0/16 | 0.1 | 3/16 | |
| 1 | 42 | 11490 | 0.03 | 1/16 | 0.13 | 7/16 |
| 90 | 24625 | 0.03 | 0/16 | 0.1 | 4/16 | |
| 180 | 49250 | 0.01 | 0/16 | 0.04 | 1/16 | |
| 250 | 68400 | 0.01 | 0/16 | 0.04 | 1/16 |
Figure 1The correlation between DNA concentration and doses of UVC radiation for the experiments performed in the laboratory and laminar using 10 µL of undiluted blood treated only with UVC radiation (only-UVC group).
Figure 2The correlation between DNA concentration and doses of UVC radiation for the experiments performed in the laboratory and laminar using 10 µL of undiluted saliva treated only with UVC radiation (only-UVC group).
Figure 7The correlation between the number of correctly detected alleles on analyzed genetic loci in four previously defined genetic loci groups and doses of UVC radiation, for the experiments performed in the laminar using 10 μL of undiluted semen treated only with UVC radiation (only-UVC group).