Literature DB >> 23765854

Biogeographical patterns of soil bacterial communities.

Samuel Dequiedt1, Jean Thioulouse, Claudy Jolivet, Nicolas P A Saby, Mélanie Lelievre, Pierre-Alain Maron, Manuel P Martin, Nicolas Chemidlin Prévost-Bouré, Benoit Toutain, Dominique Arrouays, Philippe Lemanceau, Lionel Ranjard.   

Abstract

This study provides the first maps of variations in bacterial community structure on a broad scale based on genotyping of DNA extracts from 593 soils from four different regions of France (North, Brittany, South-East and Landes). Soils were obtained from the soil library of RMQS ('Réseau de Mesures de la Qualité des Sols' = French soil quality monitoring network). The relevance of a biogeographic approach for studying bacterial communities was demonstrated by the great variability in community structure and specific geographical patterns within and between the four regions. The data indicated that the distribution of bacterial community composition might be more related to local factors such as soil type and land cover than to more global factors such as climatic and geomorphologic characteristics. Furthermore, the regional pools of biodiversity could be ordered: South-East ≥ North > Brittany > Landes, according to the observed regional variability of the bacterial communities, which could be helpful for improving land use in accordance with soil biodiversity management.
© 2009 Society for Applied Microbiology and Blackwell Publishing Ltd.

Year:  2009        PMID: 23765854     DOI: 10.1111/j.1758-2229.2009.00040.x

Source DB:  PubMed          Journal:  Environ Microbiol Rep        ISSN: 1758-2229            Impact factor:   3.541


  22 in total

1.  Influence of geogenic factors on microbial communities in metallogenic Australian soils.

Authors:  Frank Reith; Joel Brugger; Carla M Zammit; Adrienne L Gregg; Katherine C Goldfarb; Gary L Andersen; Todd Z DeSantis; Yvette M Piceno; Eoin L Brodie; Zhenmei Lu; Zhili He; Jizhong Zhou; Steven A Wakelin
Journal:  ISME J       Date:  2012-06-07       Impact factor: 10.302

2.  Determinants of the distribution of nitrogen-cycling microbial communities at the landscape scale.

Authors:  D Bru; A Ramette; N P A Saby; S Dequiedt; L Ranjard; C Jolivet; D Arrouays; L Philippot
Journal:  ISME J       Date:  2010-08-12       Impact factor: 10.302

3.  Spatial distribution of ammonia-oxidizing bacteria and archaea across a 44-hectare farm related to ecosystem functioning.

Authors:  Ella Wessén; Mats Söderström; Maria Stenberg; David Bru; Maria Hellman; Allana Welsh; Frida Thomsen; Leif Klemedtson; Laurent Philippot; Sara Hallin
Journal:  ISME J       Date:  2011-01-13       Impact factor: 10.302

4.  Microbial community analysis of pH 4 thermal springs in Yellowstone National Park.

Authors:  Xiaoben Jiang; Cristina D Takacs-Vesbach
Journal:  Extremophiles       Date:  2016-11-02       Impact factor: 2.395

5.  Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity.

Authors:  L Ranjard; S Dequiedt; N Chemidlin Prévost-Bouré; J Thioulouse; N P A Saby; M Lelievre; P A Maron; F E R Morin; A Bispo; C Jolivet; D Arrouays; P Lemanceau
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

6.  Evaluation of the ecotoxicological impact of the organochlorine chlordecone on soil microbial community structure, abundance, and function.

Authors:  Chloé Merlin; Marion Devers; Jérémie Béguet; Baptiste Boggio; Nadine Rouard; Fabrice Martin-Laurent
Journal:  Environ Sci Pollut Res Int       Date:  2015-05-30       Impact factor: 4.223

7.  Factors Controlling Soil Microbial Biomass and Bacterial Diversity and Community Composition in a Cold Desert Ecosystem: Role of Geographic Scale.

Authors:  David J Van Horn; M Lee Van Horn; John E Barrett; Michael N Gooseff; Adam E Altrichter; Kevin M Geyer; Lydia H Zeglin; Cristina D Takacs-Vesbach
Journal:  PLoS One       Date:  2013-06-18       Impact factor: 3.240

8.  Validation and application of a PCR primer set to quantify fungal communities in the soil environment by real-time quantitative PCR.

Authors:  Nicolas Chemidlin Prévost-Bouré; Richard Christen; Samuel Dequiedt; Christophe Mougel; Mélanie Lelièvre; Claudy Jolivet; Hamid Reza Shahbazkia; Laure Guillou; Dominique Arrouays; Lionel Ranjard
Journal:  PLoS One       Date:  2011-09-08       Impact factor: 3.240

9.  Contrasting spatial patterns and ecological attributes of soil bacterial and archaeal taxa across a landscape.

Authors:  Florentin Constancias; Nicolas P A Saby; Sébastien Terrat; Samuel Dequiedt; Wallid Horrigue; Virginie Nowak; Jean-Philippe Guillemin; Luc Biju-Duval; Nicolas Chemidlin Prévost-Bouré; Lionel Ranjard
Journal:  Microbiologyopen       Date:  2015-04-28       Impact factor: 3.139

10.  Evaluation of the ISO standard 11063 DNA extraction procedure for assessing soil microbial abundance and community structure.

Authors:  Pierre Plassart; Sébastien Terrat; Bruce Thomson; Robert Griffiths; Samuel Dequiedt; Mélanie Lelievre; Tiffanie Regnier; Virginie Nowak; Mark Bailey; Philippe Lemanceau; Antonio Bispo; Abad Chabbi; Pierre-Alain Maron; Christophe Mougel; Lionel Ranjard
Journal:  PLoS One       Date:  2012-09-11       Impact factor: 3.240

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