Literature DB >> 23762211

Coupling visualization and data analysis for knowledge discovery from multi-dimensional scientific data.

Oliver Rübel1, Sean Ahern, E Wes Bethel, Mark D Biggin, Hank Childs, Estelle Cormier-Michel, Angela Depace, Michael B Eisen, Charless C Fowlkes, Cameron G R Geddes, Hans Hagen, Bernd Hamann, Min-Yu Huang, Soile V E Keränen, David W Knowles, Cris L Luengo Hendriks, Jitendra Malik, Jeremy Meredith, Peter Messmer, Daniela Ushizima, Gunther H Weber, Kesheng Wu.   

Abstract

Knowledge discovery from large and complex scientific data is a challenging task. With the ability to measure and simulate more processes at increasingly finer spatial and temporal scales, the growing number of data dimensions and data objects presents tremendous challenges for effective data analysis and data exploration methods and tools. The combination and close integration of methods from scientific visualization, information visualization, automated data analysis, and other enabling technologies -such as efficient data management- supports knowledge discovery from multi-dimensional scientific data. This paper surveys two distinct applications in developmental biology and accelerator physics, illustrating the effectiveness of the described approach.

Entities:  

Keywords:  3D gene expression; data analysis; information visualization; laser wakefield particle acceleration; multi-dimensional data; scientific visualization

Year:  2010        PMID: 23762211      PMCID: PMC3677775          DOI: 10.1016/j.procs.2010.04.197

Source DB:  PubMed          Journal:  Procedia Comput Sci


  7 in total

1.  High-quality electron beams from a laser wakefield accelerator using plasma-channel guiding.

Authors:  C G R Geddes; C S Toth; J Van Tilborg; E Esarey; C B Schroeder; D Bruhwiler; C Nieter; J Cary; W P Leemans
Journal:  Nature       Date:  2004-09-30       Impact factor: 49.962

2.  Near-GeV-energy laser-wakefield acceleration of self-injected electrons in a centimeter-scale plasma channel.

Authors:  F S Tsung; Ritesh Narang; W B Mori; C Joshi; R A Fonseca; L O Silva
Journal:  Phys Rev Lett       Date:  2004-10-27       Impact factor: 9.161

3.  A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm.

Authors:  Charless C Fowlkes; Cris L Luengo Hendriks; Soile V E Keränen; Gunther H Weber; Oliver Rübel; Min-Yu Huang; Sohail Chatoor; Angela H DePace; Lisa Simirenko; Clara Henriquez; Amy Beaton; Richard Weiszmann; Susan Celniker; Bernd Hamann; David W Knowles; Mark D Biggin; Michael B Eisen; Jitendra Malik
Journal:  Cell       Date:  2008-04-18       Impact factor: 41.582

4.  Integrating data clustering and visualization for the analysis of 3D gene expression data.

Authors:  Oliver Rübel; Gunther H Weber; Min-Yu Huang; E Wes Bethel; Mark D Biggin; Charless C Fowlkes; Cris L Luengo Hendriks; Soile V E Keränen; Michael B Eisen; David W Knowles; Jitendra Malik; Hans Hagen; Bernd Hamann
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2010 Jan-Mar       Impact factor: 3.710

5.  Cluster analysis and display of genome-wide expression patterns.

Authors:  M B Eisen; P T Spellman; P O Brown; D Botstein
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-08       Impact factor: 11.205

6.  Visual exploration of three-dimensional gene expression using physical views and linked abstract views.

Authors:  Gunther H Weber; Oliver Rübel; Min-Yu Huang; Angela H DePace; Charless C Fowlkes; Soile V E Keränen; Cris L Luengo Hendriks; Hans Hagen; David W Knowles; Jitendra Malik; Mark D Biggin; Bernd Hamann
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2009 Apr-Jun       Impact factor: 3.710

7.  Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution I: data acquisition pipeline.

Authors:  Cris L Luengo Hendriks; Soile V E Keränen; Charless C Fowlkes; Lisa Simirenko; Gunther H Weber; Angela H DePace; Clara Henriquez; David W Kaszuba; Bernd Hamann; Michael B Eisen; Jitendra Malik; Damir Sudar; Mark D Biggin; David W Knowles
Journal:  Genome Biol       Date:  2006       Impact factor: 13.583

  7 in total
  2 in total

1.  Temporal ordering and registration of images in studies of developmental dynamics.

Authors:  Carmeline J Dsilva; Bomyi Lim; Hang Lu; Amit Singer; Ioannis G Kevrekidis; Stanislav Y Shvartsman
Journal:  Development       Date:  2015-04-01       Impact factor: 6.868

2.  On the Development of Virtual Reality Scenarios for Computer-Assisted Biomedical Applications.

Authors:  Eder H Govea-Valladares; Hugo I Medellin-Castillo; Jorge Ballesteros; Miguel A Rodriguez-Florido
Journal:  J Healthc Eng       Date:  2018-08-30       Impact factor: 2.682

  2 in total

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