Literature DB >> 23757500

Genetic circuitry of Survival motor neuron, the gene underlying spinal muscular atrophy.

Anindya Sen1, Douglas N Dimlich, K G Guruharsha, Mark W Kankel, Kazuya Hori, Takakazu Yokokura, Sophie Brachat, Delwood Richardson, Joseph Loureiro, Rajeev Sivasankaran, Daniel Curtis, Lance S Davidow, Lee L Rubin, Anne C Hart, David Van Vactor, Spyros Artavanis-Tsakonas.   

Abstract

The clinical severity of the neurodegenerative disorder spinal muscular atrophy (SMA) is dependent on the levels of functional Survival Motor Neuron (SMN) protein. Consequently, current strategies for developing treatments for SMA generally focus on augmenting SMN levels. To identify additional potential therapeutic avenues and achieve a greater understanding of SMN, we applied in vivo, in vitro, and in silico approaches to identify genetic and biochemical interactors of the Drosophila SMN homolog. We identified more than 300 candidate genes that alter an Smn-dependent phenotype in vivo. Integrating the results from our genetic screens, large-scale protein interaction studies, and bioinformatic analysis, we define a unique interactome for SMN that provides a knowledge base for a better understanding of SMA.

Entities:  

Keywords:  ALS; disease model; neurodegeneration; neuromuscular junction; proteomics

Mesh:

Substances:

Year:  2013        PMID: 23757500      PMCID: PMC3696827          DOI: 10.1073/pnas.1301738110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  65 in total

1.  Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.

Authors:  Da Wei Huang; Brad T Sherman; Richard A Lempicki
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

2.  In vitro and in cellulo evidences for association of the survival of motor neuron complex with the fragile X mental retardation protein.

Authors:  Nathalie Piazzon; Florence Rage; Florence Schlotter; Hervé Moine; Christiane Branlant; Séverine Massenet
Journal:  J Biol Chem       Date:  2007-12-19       Impact factor: 5.157

3.  Plastin 3 is a protective modifier of autosomal recessive spinal muscular atrophy.

Authors:  Gabriela E Oprea; Sandra Kröber; Michelle L McWhorter; Wilfried Rossoll; Stefan Müller; Michael Krawczak; Gary J Bassell; Christine E Beattie; Brunhilde Wirth
Journal:  Science       Date:  2008-04-25       Impact factor: 47.728

4.  Impaired synaptic vesicle release and immaturity of neuromuscular junctions in spinal muscular atrophy mice.

Authors:  Lingling Kong; Xueyong Wang; Dong W Choe; Michelle Polley; Barrington G Burnett; Marta Bosch-Marcé; John W Griffin; Mark M Rich; Charlotte J Sumner
Journal:  J Neurosci       Date:  2009-01-21       Impact factor: 6.167

5.  A Drosophila melanogaster model of spinal muscular atrophy reveals a function for SMN in striated muscle.

Authors:  T K Rajendra; Graydon B Gonsalvez; Michael P Walker; Karl B Shpargel; Helen K Salz; A Gregory Matera
Journal:  J Cell Biol       Date:  2007-03-12       Impact factor: 10.539

6.  Modeling spinal muscular atrophy in Drosophila.

Authors:  Howard Chia-Hao Chang; Douglas N Dimlich; Takakazu Yokokura; Ashim Mukherjee; Mark W Kankel; Anindya Sen; Vasanthi Sridhar; Tudor A Fulga; Anne C Hart; David Van Vactor; Spyros Artavanis-Tsakonas
Journal:  PLoS One       Date:  2008-09-15       Impact factor: 3.240

7.  Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists.

Authors:  Da Wei Huang; Brad T Sherman; Richard A Lempicki
Journal:  Nucleic Acids Res       Date:  2008-11-25       Impact factor: 16.971

8.  Assessing performance of orthology detection strategies applied to eukaryotic genomes.

Authors:  Feng Chen; Aaron J Mackey; Jeroen K Vermunt; David S Roos
Journal:  PLoS One       Date:  2007-04-18       Impact factor: 3.240

9.  Beyond Parkinson disease: amyotrophic lateral sclerosis and the axon guidance pathway.

Authors:  Timothy G Lesnick; Eric J Sorenson; J Eric Ahlskog; John R Henley; Lina Shehadeh; Spiridon Papapetropoulos; Demetrius M Maraganore
Journal:  PLoS One       Date:  2008-01-16       Impact factor: 3.240

10.  dAtaxin-2 mediates expanded Ataxin-1-induced neurodegeneration in a Drosophila model of SCA1.

Authors:  Ismael Al-Ramahi; Alma M Pérez; Janghoo Lim; Minghang Zhang; Rie Sorensen; Maria de Haro; Joana Branco; Stefan M Pulst; Huda Y Zoghbi; Juan Botas
Journal:  PLoS Genet       Date:  2007-11-16       Impact factor: 5.917

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  19 in total

Review 1.  The role of FUS gene variants in neurodegenerative diseases.

Authors:  Hao Deng; Kai Gao; Joseph Jankovic
Journal:  Nat Rev Neurol       Date:  2014-05-20       Impact factor: 42.937

Review 2.  Assays for the identification and prioritization of drug candidates for spinal muscular atrophy.

Authors:  Jonathan J Cherry; Dione T Kobayashi; Maureen M Lynes; Nikolai N Naryshkin; Francesco Danilo Tiziano; Phillip G Zaworski; Lee L Rubin; Jill Jarecki
Journal:  Assay Drug Dev Technol       Date:  2014-08       Impact factor: 1.738

3.  The survival motor neuron gene smn-1 interacts with the U2AF large subunit gene uaf-1 to regulate Caenorhabditis elegans lifespan and motor functions.

Authors:  Xiaoyang Gao; Yanling Teng; Jintao Luo; Liange Huang; Min Li; Zhuohua Zhang; Yong-Chao Ma; Long Ma
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

4.  Transcription factor networks in Drosophila melanogaster.

Authors:  David Y Rhee; Dong-Yeon Cho; Bo Zhai; Matthew Slattery; Lijia Ma; Julian Mintseris; Christina Y Wong; Kevin P White; Susan E Celniker; Teresa M Przytycka; Steven P Gygi; Robert A Obar; Spyros Artavanis-Tsakonas
Journal:  Cell Rep       Date:  2014-09-18       Impact factor: 9.423

5.  Genetic Interactions between the Members of the SMN-Gemins Complex in Drosophila.

Authors:  Rebecca M Borg; Rémy Bordonne; Neville Vassallo; Ruben J Cauchi
Journal:  PLoS One       Date:  2015-06-22       Impact factor: 3.240

6.  Quality assessment and control of tissue specific RNA-seq libraries of Drosophila transgenic RNAi models.

Authors:  Andreia J Amaral; Francisco F Brito; Tamar Chobanyan; Seiko Yoshikawa; Takakazu Yokokura; David Van Vactor; Margarida Gama-Carvalho
Journal:  Front Genet       Date:  2014-03-05       Impact factor: 4.599

7.  The Gemin associates of survival motor neuron are required for motor function in Drosophila.

Authors:  Rebecca Borg; Ruben J Cauchi
Journal:  PLoS One       Date:  2013-12-31       Impact factor: 3.240

8.  A genetic screen identifies Tor as an interactor of VAPB in a Drosophila model of amyotrophic lateral sclerosis.

Authors:  Senthilkumar Deivasigamani; Hemant Kumar Verma; Ryu Ueda; Anuradha Ratnaparkhi; Girish S Ratnaparkhi
Journal:  Biol Open       Date:  2014-10-31       Impact factor: 2.422

9.  The Notch-mediated hyperplasia circuitry in Drosophila reveals a Src-JNK signaling axis.

Authors:  Diana M Ho; S K Pallavi; Spyros Artavanis-Tsakonas
Journal:  Elife       Date:  2015-07-29       Impact factor: 8.140

10.  Drosophila Syncrip modulates the expression of mRNAs encoding key synaptic proteins required for morphology at the neuromuscular junction.

Authors:  Suzanne M McDermott; Lu Yang; James M Halstead; Russell S Hamilton; Carine Meignin; Ilan Davis
Journal:  RNA       Date:  2014-08-29       Impact factor: 4.942

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