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Literature DB >> 23757227

Correlative microscopy for phylogenetic and ultrastructural characterization of microbial communities.

Bernhard Knierim¹, Birgit Luef, Paul Wilmes, Richard I Webb, Manfred Auer, Luis R Comolli, Jillian F Banfield.

Abstract

Transmission electron microscopy (TEM) can provide ultrastructural information for cells in microbial community samples and phylogenetic information can be recovered via molecular surveys. Here we report an approach to link these data sets by coupling fluorescence in situ hybridization (FISH) with either conventional biological or cryogenic TEM. The method could fundamentally improve our understanding of the organization and functioning of microbial communities in natural systems.

Entities: Chemical Disease Species

Year: 2011 PMID： 23757227 PMCID： PMC4444221 DOI： 10.1111/j.1758-2229.2011.00275.x

Source DB: PubMed Journal: Environ Microbiol Rep ISSN： 1758-2229 Impact factor: 3.541

12 in total

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Authors: R I Amann; B J Binder; R J Olson; S W Chisholm; R Devereux; D A Stahl
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2. Enigmatic, ultrasmall, uncultivated Archaea.

Authors: Brett J Baker; Luis R Comolli; Gregory J Dick; Loren J Hauser; Doug Hyatt; Brian D Dill; Miriam L Land; Nathan C Verberkmoes; Robert L Hettich; Jillian F Banfield
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3. Fluorescence in situ hybridisation coupled to ultra small immunogold detection to identify prokaryotic cells using transmission and scanning electron microscopy.

Authors: Emmanuelle Gérard; François Guyot; Pascal Philippot; Purificación López-García
Journal: J Microbiol Methods Date: 2005-10 Impact factor: 2.363

4. Easy flat embedding of oriented samples in hydrophilic resin (LR White) under controlled atmosphere: application allowing both nucleic acid hybridizations (CARD-FISH) and ultrastructural observations.

Authors: Olivier Gros; Leslie C Maurin
Journal: Acta Histochem Date: 2008-01-09 Impact factor: 2.479

5. Phylogenetic stains: ribosomal RNA-based probes for the identification of single cells.

Authors: E F DeLong; G S Wickham; N R Pace
Journal: Science Date: 1989-03-10 Impact factor: 47.728

6. Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria.

Authors: Annelie Pernthaler; Jakob Pernthaler; Rudolf Amann
Journal: Appl Environ Microbiol Date: 2002-06 Impact factor: 4.792

7. Combination of fluorescent in situ hybridization and microautoradiography-a new tool for structure-function analyses in microbial ecology.

Authors: N Lee; P H Nielsen; K H Andreasen; S Juretschko; J L Nielsen; K H Schleifer; M Wagner
Journal: Appl Environ Microbiol Date: 1999-03 Impact factor: 4.792

8. Linking microbial phylogeny to metabolic activity at the single-cell level by using enhanced element labeling-catalyzed reporter deposition fluorescence in situ hybridization (EL-FISH) and NanoSIMS.

Authors: Sebastian Behrens; Tina Lösekann; Jennifer Pett-Ridge; Peter K Weber; Wing-On Ng; Bradley S Stevenson; Ian D Hutcheon; David A Relman; Alfred M Spormann
Journal: Appl Environ Microbiol Date: 2008-03-21 Impact factor: 4.792

Review 9. Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques.

Authors: Rudolf Amann; Bernhard M Fuchs
Journal: Nat Rev Microbiol Date: 2008-05 Impact factor: 60.633

Review 10. Microbial landscapes: new paths to biofilm research.

Authors: Tom J Battin; William T Sloan; Staffan Kjelleberg; Holger Daims; Ian M Head; Tom P Curtis; Leo Eberl
Journal: Nat Rev Microbiol Date: 2007-01 Impact factor: 60.633

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Authors: Shawn E McGlynn; Grayson L Chadwick; Ariel O'Neill; Mason Mackey; Andrea Thor; Thomas J Deerinck; Mark H Ellisman; Victoria J Orphan
Journal: Appl Environ Microbiol Date: 2018-05-17 Impact factor: 4.792

2. Iron-reducing bacteria accumulate ferric oxyhydroxide nanoparticle aggregates that may support planktonic growth.

Authors: Birgit Luef; Sirine C Fakra; Roseann Csencsits; Kelly C Wrighton; Kenneth H Williams; Michael J Wilkins; Kenneth H Downing; Philip E Long; Luis R Comolli; Jillian F Banfield
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3. Microbial Identification, High-Resolution Microscopy and Spectrometry of the Rhizosphere in Its Native Spatial Context.

Authors: Chaturanga D Bandara; Matthias Schmidt; Yalda Davoudpour; Hryhoriy Stryhanyuk; Hans H Richnow; Niculina Musat
Journal: Front Plant Sci Date: 2021-07-07 Impact factor: 5.753

8. Spatially resolved correlative microscopy and microbial identification reveal dynamic depth- and mineral-dependent anabolic activity in salt marsh sediment.

Authors: Jeffrey Marlow; Rachel Spietz; Keun-Young Kim; Mark Ellisman; Peter Girguis; Roland Hatzenpichler
Journal: Environ Microbiol Date: 2021-08-04 Impact factor: 5.491