Literature DB >> 23756885

R for genome-wide association studies.

Cedric Gondro1, Laercio R Porto-Neto, Seung Hwan Lee.   

Abstract

In recent years R has become de facto statistical programming language of choice for statisticians and it is also arguably the most widely used generic environment for analysis of high-throughput genomic data. In this chapter we discuss some approaches to improve performance of R when working with large SNP datasets.

Mesh:

Year:  2013        PMID: 23756885     DOI: 10.1007/978-1-62703-447-0_1

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  3 in total

1.  hsphase: an R package for pedigree reconstruction, detection of recombination events, phasing and imputation of half-sib family groups.

Authors:  Mohammad H Ferdosi; Brian P Kinghorn; Julius H J van der Werf; Seung Hwan Lee; Cedric Gondro
Journal:  BMC Bioinformatics       Date:  2014-06-07       Impact factor: 3.169

2.  Comprehensive analysis of key lncRNAs in HCV-positive hepatocellular carcinoma.

Authors:  Jingqi Liu; Ligang Chen; Jinshui Pan; Meiya Chen; Jingping Zhou; Fei Zhou; Peizhong Chen; Yang Song
Journal:  Arch Med Sci       Date:  2020-11-05       Impact factor: 3.318

3.  Construction of lncRNA-miRNA-mRNA networks reveals functional lncRNAs in abdominal aortic aneurysm.

Authors:  Lu Tian; Xiaofeng Hu; Yangyan He; Ziheng Wu; Donglin Li; Hongkun Zhang
Journal:  Exp Ther Med       Date:  2018-09-04       Impact factor: 2.447

  3 in total

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