Literature DB >> 23754471

Neisseria meningitidis expresses a single 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase that is inhibited primarily by phenylalanine.

Penelope J Cross1, Amy L Pietersma, Timothy M Allison, Sarah M Wilson-Coutts, Fiona C Cochrane, Emily J Parker.   

Abstract

Neisseria meningitidis is the causative agent of meningitis and meningococcal septicemia is a major cause of disease worldwide, resulting in brain damage and hearing loss, and can be fatal in a large proportion of cases. The enzyme 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (DAH7PS) catalyzes the first reaction in the shikimate pathway leading to the biosynthesis of aromatic metabolites including the aromatic acids l-Trp, l-Phe, and l-Tyr. This pathway is absent in humans, meaning that enzymes of the pathway are considered as potential candidates for therapeutic intervention. As the entry point, feedback inhibition of DAH7PS by pathway end products is a key mechanism for the control of pathway flux. The structure of the single DAH7PS expressed by N. meningitidis was determined at 2.0 Å resolution. In contrast to the other DAH7PS enzymes, which are inhibited only by a single aromatic amino acid, the N. meningitidis DAH7PS was inhibited by all three aromatic amino acids, showing greatest sensitivity to l-Phe. An N. meningitidis enzyme variant, in which a single Ser residue at the bottom of the inhibitor-binding cavity was substituted to Gly, altered inhibitor specificity from l-Phe to l-Tyr. Comparison of the crystal structures of both unbound and Tyr-bound forms and the small angle X-ray scattering profiles reveal that N. meningtidis DAH7PS undergoes no significant conformational change on inhibitor binding. These observations are consistent with an allosteric response arising from changes in protein motion rather than conformation, and suggest ligands that modulate protein dynamics may be effective inhibitors of this enzyme.
© 2013 The Protein Society.

Entities:  

Keywords:  DAHPS; allostery; aromatic amino acids; shikimate

Mesh:

Substances:

Year:  2013        PMID: 23754471      PMCID: PMC3832045          DOI: 10.1002/pro.2293

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  54 in total

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2.  Dynamic cross-talk among remote binding sites: the molecular basis for unusual synergistic allostery.

Authors:  Wanting Jiao; Richard D Hutton; Penelope J Cross; Geoffrey B Jameson; Emily J Parker
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Review 3.  The shikimate pathway and aromatic amino Acid biosynthesis in plants.

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4.  Substrate ambiguity of 3-deoxy-D-manno-octulosonate 8-phosphate synthase from Neisseria gonorrhoeae in the context of its membership in a protein family containing a subset of 3-deoxy-D-arabino-heptulosonate 7-phosphate synthases.

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5.  Allosteric inhibition of 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase alters the coordination of both substrates.

Authors:  Igor A Shumilin; Chang Zhao; Ronald Bauerle; Robert H Kretsinger
Journal:  J Mol Biol       Date:  2002-07-26       Impact factor: 5.469

6.  Crystal structure of the reaction complex of 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase from Thermotoga maritima refines the catalytic mechanism and indicates a new mechanism of allosteric regulation.

Authors:  Igor A Shumilin; Ronald Bauerle; Jing Wu; Ronald W Woodard; Robert H Kretsinger
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9.  MolProbity: all-atom structure validation for macromolecular crystallography.

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  8 in total

Review 1.  X-ray Scattering Studies of Protein Structural Dynamics.

Authors:  Steve P Meisburger; William C Thomas; Maxwell B Watkins; Nozomi Ando
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2.  Domain cross-talk within a bifunctional enzyme provides catalytic and allosteric functionality in the biosynthesis of aromatic amino acids.

Authors:  Yu Bai; Eric J M Lang; Ali Reza Nazmi; Emily J Parker
Journal:  J Biol Chem       Date:  2019-01-22       Impact factor: 5.157

3.  Interdomain Conformational Changes Provide Allosteric Regulation en Route to Chorismate.

Authors:  Ali Reza Nazmi; Eric J M Lang; Yu Bai; Timothy M Allison; Mohamad H Othman; Santosh Panjikar; Vickery L Arcus; Emily J Parker
Journal:  J Biol Chem       Date:  2016-08-08       Impact factor: 5.157

4.  The entry reaction of the plant shikimate pathway is subjected to highly complex metabolite-mediated regulation.

Authors:  Ryo Yokoyama; Marcos V V de Oliveira; Bailey Kleven; Hiroshi A Maeda
Journal:  Plant Cell       Date:  2021-05-05       Impact factor: 11.277

5.  Structure of Chorismate Mutase-like Domain of DAHPS from Bacillus subtilis Complexed with Novel Inhibitor Reveals Conformational Plasticity of Active Site.

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6.  Quaternary structure is an essential component that contributes to the sophisticated allosteric regulation mechanism in a key enzyme from Mycobacterium tuberculosis.

Authors:  Wanting Jiao; Nicola J Blackmore; Ali Reza Nazmi; Emily J Parker
Journal:  PLoS One       Date:  2017-06-30       Impact factor: 3.240

7.  Isolation and biochemical characterization of a metagenome-derived 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase gene from subtropical marine mangrove wetland sediments.

Authors:  Huaxian Zhao; Hua Gao; Kai Ji; Bing Yan; Quanwen Li; Shuming Mo; Minggang Zheng; Qian Ou; Bo Wu; Nan Li; Chengjian Jiang
Journal:  AMB Express       Date:  2019-02-04       Impact factor: 3.298

8.  The Functional Unit of Neisseria meningitidis 3-Deoxy-ᴅ-Arabino-Heptulosonate 7-Phosphate Synthase Is Dimeric.

Authors:  Penelope J Cross; Logan C Heyes; Shiwen Zhang; Ali Reza Nazmi; Emily J Parker
Journal:  PLoS One       Date:  2016-02-01       Impact factor: 3.240

  8 in total

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