Literature DB >> 23749386

Parallelization of a multiconfigurational perturbation theory.

Steven Vancoillie1, Mickaël G Delcey, Roland Lindh, Victor Vysotskiy, Per-Åke Malmqvist, Valera Veryazov.   

Abstract

In this work, we present a parallel approach to complete and restricted active space second-order perturbation theory, (CASPT2/RASPT2). We also make an assessment of the performance characteristics of its particular implementation in the Molcas quantum chemistry programming package. Parallel scaling is limited by memory and I/O bandwidth instead of available cores. Significant time savings for calculations on large and complex systems can be achieved by increasing the number of processes on a single machine, as long as memory bandwidth allows, or by using multiple nodes with a fast, low-latency interconnect. We found that parallel efficiency drops below 50% when using 8-16 cores on the shared-memory architecture, or 16-32 nodes on the distributed-memory architecture, depending on the calculation. This limits the scalability of the implementation to a moderate amount of processes. Nonetheless, calculations that took more than 3 days on a serial machine could be performed in less than 5 h on an InfiniBand cluster, where the individual nodes were not even capable of running the calculation because of memory and I/O requirements. This ensures the continuing study of larger molecular systems by means of CASPT2/RASPT2 through the use of the aggregated computational resources offered by distributed computing systems.
Copyright © 2013 Wiley Periodicals, Inc.

Keywords:  CASPT2; high performance computing; multiconfigurational perturbation theory; parallellization

Mesh:

Substances:

Year:  2013        PMID: 23749386     DOI: 10.1002/jcc.23342

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  5 in total

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  5 in total

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