Literature DB >> 23747706

Broad distribution of diverse anaerobic ammonium-oxidizing bacteria in chinese agricultural soils.

Li-Dong Shen1, Shuai Liu, Li-Ping Lou, Wei-Ping Liu, Xiang-Yang Xu, Ping Zheng, Bao-Lan Hu.   

Abstract

Anaerobic ammonium-oxidizing (anammox) bacteria have been detected in many marine and freshwater ecosystems. However, little is known about the distribution, diversity, and abundance of anammox bacteria in terrestrial ecosystems. In this study, anammox bacteria were found to be present in various agricultural soils collected from 32 different locations in China. Phylogenetic analysis of the 16S rRNA genes showed "Candidatus Brocadia," "Candidatus Kuenenia," "Candidatus Anammoxoglobus," and "Candidatus Jettenia" in the collected soils, with "Candidatus Brocadia" being the dominant genus. Quantitative PCR showed that the abundance of anammox bacteria ranged from 6.38 × 10(4) ± 0.42 × 10(4) to 3.69 × 10(6) ± 0.25 × 10(6) copies per gram of dry weight. Different levels of diversity, composition, and abundance of the anammox bacterial communities were observed, and redundancy analysis indicated that the soil organic content and the distribution of anammox communities were correlated in the soils examined. Furthermore, Pearson correlation analysis showed that the diversity of the anammox bacteria was positively correlated with the soil ammonium content and the organic content, while the anammox bacterial abundance was positively correlated with the soil ammonium content. These results demonstrate the broad distribution of diverse anammox bacteria and its correlation with the soil environmental conditions within an extensive range of Chinese agricultural soils.

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Year:  2013        PMID: 23747706      PMCID: PMC3811364          DOI: 10.1128/AEM.00884-13

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  39 in total

1.  Anammox organism KSU-1 expresses a NirK-type copper-containing nitrite reductase instead of a NirS-type with cytochrome cd1.

Authors:  Daisuke Hira; Hidehiro Toh; Catharina T Migita; Hiroki Okubo; Takashi Nishiyama; Masahira Hattori; Kenji Furukawa; Takao Fujii
Journal:  FEBS Lett       Date:  2012-05-02       Impact factor: 4.124

2.  Identification and quantification of anammox bacteria in eight nitrogen removal reactors.

Authors:  Bao-lan Hu; Ping Zheng; Chong-jian Tang; Jian-wei Chen; Erwin van der Biezen; Lei Zhang; Bing-jie Ni; Mike S M Jetten; Jia Yan; Han-Qing Yu; Boran Kartal
Journal:  Water Res       Date:  2010-07-16       Impact factor: 11.236

Review 3.  Marine microorganisms and global nutrient cycles.

Authors:  Kevin R Arrigo
Journal:  Nature       Date:  2005-09-15       Impact factor: 49.962

4.  Molecular detection of anammox bacteria in terrestrial ecosystems: distribution and diversity.

Authors:  Sylvia Humbert; Sonia Tarnawski; Nathalie Fromin; Marc-Philippe Mallet; Michel Aragno; Jakob Zopfi
Journal:  ISME J       Date:  2009-12-10       Impact factor: 10.302

5.  Monitoring a widespread bacterial group: in situ detection of planctomycetes with 16S rRNA-targeted probes.

Authors:  Alexander Neef; Rudolf Amann; Heinz Schlesner; Karl-Heinz Schleifer
Journal:  Microbiology (Reading)       Date:  1998-12       Impact factor: 2.777

6.  Residence of habitat-specific anammox bacteria in the deep-sea subsurface sediments of the South China Sea: analyses of marker gene abundance with physical chemical parameters.

Authors:  Yi-Guo Hong; Meng Li; Huiluo Cao; Ji-Dong Gu
Journal:  Microb Ecol       Date:  2011-04-14       Impact factor: 4.552

7.  Hydrazine synthase, a unique phylomarker with which to study the presence and biodiversity of anammox bacteria.

Authors:  Harry R Harhangi; Mathilde Le Roy; Theo van Alen; Bao-Lan Hu; Joost Groen; Boran Kartal; Susannah G Tringe; Zhe-Xue Quan; Mike S M Jetten; Huub J M Op den Camp
Journal:  Appl Environ Microbiol       Date:  2011-12-02       Impact factor: 4.792

8.  Significant acidification in major Chinese croplands.

Authors:  J H Guo; X J Liu; Y Zhang; J L Shen; W X Han; W F Zhang; P Christie; K W T Goulding; P M Vitousek; F S Zhang
Journal:  Science       Date:  2010-02-11       Impact factor: 47.728

9.  A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones.

Authors:  Dagmar Woebken; Phyllis Lam; Marcel M M Kuypers; S Wajih A Naqvi; Boran Kartal; Marc Strous; Mike S M Jetten; Bernhard M Fuchs; Rudolf Amann
Journal:  Environ Microbiol       Date:  2008-05-27       Impact factor: 5.491

10.  Anaerobic ammonium-oxidizing bacteria in marine environments: widespread occurrence but low diversity.

Authors:  Markus C Schmid; Nils Risgaard-Petersen; Jack van de Vossenberg; Marcel M M Kuypers; Gaute Lavik; Jan Petersen; Stefan Hulth; Bo Thamdrup; Don Canfield; Tage Dalsgaard; Søren Rysgaard; Mikael K Sejr; Marc Strous; Huub J M Op den Camp; Mike S M Jetten
Journal:  Environ Microbiol       Date:  2007-06       Impact factor: 5.491

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  21 in total

1.  Evidence for the cooccurrence of nitrite-dependent anaerobic ammonium and methane oxidation processes in a flooded paddy field.

Authors:  Li-Dong Shen; Shuai Liu; Qian Huang; Xu Lian; Zhan-Fei He; Sha Geng; Ren-Cun Jin; Yun-Feng He; Li-Ping Lou; Xiang-Yang Xu; Ping Zheng; Bao-Lan Hu
Journal:  Appl Environ Microbiol       Date:  2014-09-26       Impact factor: 4.792

2.  Evidence for nitrite-dependent anaerobic methane oxidation as a previously overlooked microbial methane sink in wetlands.

Authors:  Bao-lan Hu; Li-dong Shen; Xu Lian; Qun Zhu; Shuai Liu; Qian Huang; Zhan-fei He; Sha Geng; Dong-qing Cheng; Li-ping Lou; Xiang-yang Xu; Ping Zheng; Yun-feng He
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-10       Impact factor: 11.205

3.  Community Composition and Abundance of Anammox Bacteria in Cattail Rhizosphere Sediments at Three Phenological Stages.

Authors:  Xiaohong Zhou; Jinping Zhang; Chunzi Wen
Journal:  Curr Microbiol       Date:  2017-08-05       Impact factor: 2.188

4.  A Comparison of Anammox Bacterial Abundance and Community Structures in Three Different Emerged Plants-Related Sediments.

Authors:  Jinyu Chu; Jinping Zhang; Xiaohong Zhou; Biao Liu; Yimin Li
Journal:  Curr Microbiol       Date:  2015-06-16       Impact factor: 2.188

5.  Potential role of anammox in nitrogen removal in a freshwater reservoir, Jiulonghu Reservoir (China).

Authors:  Li-Dong Shen; Hai-Xiang Cheng; Xu Liu; Jian-Hui Li; Yan Liu
Journal:  Environ Sci Pollut Res Int       Date:  2016-11-30       Impact factor: 4.223

6.  Potential contribution of anammox to nitrogen loss from paddy soils in Southern China.

Authors:  Xiao-Ru Yang; Hu Li; San-An Nie; Jian-Qiang Su; Bo-Sen Weng; Gui-Bing Zhu; Huai-Ying Yao; Jack A Gilbert; Yong-Guan Zhu
Journal:  Appl Environ Microbiol       Date:  2014-11-21       Impact factor: 4.792

Review 7.  Microbial Biogeochemical Cycling of Nitrogen in Arid Ecosystems.

Authors:  Jean-Baptiste Ramond; Karen Jordaan; Beatriz Díez; Sandra M Heinzelmann; Don A Cowan
Journal:  Microbiol Mol Biol Rev       Date:  2022-04-07       Impact factor: 13.044

8.  Evidence for anaerobic ammonium oxidation process in freshwater sediments of aquaculture ponds.

Authors:  Li-dong Shen; Hong-sheng Wu; Zhi-qiu Gao; Yun-jie Ruan; Xiang-hua Xu; Ji Li; Shi-jie Ma; Pei-hui Zheng
Journal:  Environ Sci Pollut Res Int       Date:  2015-09-12       Impact factor: 4.223

9.  Anaerobic ammonia-oxidizing bacteria in tropical bioaugmented zero water exchange aquaculture ponds.

Authors:  Ramya Ramankutty Nair; Boobal Rangaswamy; Bright Singh Isaac Sarojini; Valsamma Joseph
Journal:  Environ Sci Pollut Res Int       Date:  2020-01-15       Impact factor: 4.223

10.  Anaerobic Ammonium Oxidation Bacteria in a Freshwater Recirculating Pond Aquaculture System.

Authors:  Xing-Guo Liu; Jie Wang; Zong-Fan Wu; Guo-Feng Cheng; Zhao-Jun Gu
Journal:  Int J Environ Res Public Health       Date:  2021-05-06       Impact factor: 3.390

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