| Literature DB >> 23747334 |
Jiří Šponer1, Judit E Šponer, Arnošt Mládek, Pavel Banáš, Petr Jurečka, Michal Otyepka.
Abstract
In this review primarily written for non-experts we explain basic methodological aspects and interpretation of modern quantum chemical (QM) computations applied to nucleic acids. We introduce current reference QM computations on small model systems consisting of dozens of atoms. Then we comment on recent advance of fast and accurate dispersion-corrected density functional theory methods, which will allow computations of small but complete nucleic acids building blocks in the near future. The qualitative difference between QM and molecular mechanics (MM, force field) computations is discussed. We also explain relation of QM and molecular simulation computations to experiments.Keywords: DNA structure; Molecular mechanics; Molecular structures and energies; Quantum chemistry
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Year: 2013 PMID: 23747334 DOI: 10.1016/j.ymeth.2013.05.025
Source DB: PubMed Journal: Methods ISSN: 1046-2023 Impact factor: 3.608