Literature DB >> 23746510

Exponential sum-fitting of dwell-time distributions without specifying starting parameters.

David Landowne1, Bin Yuan, Karl L Magleby.   

Abstract

Fitting dwell-time distributions with sums of exponentials is widely used to characterize histograms of open- and closed-interval durations recorded from single ion channels, as well as for other physical phenomena. However, it can be difficult to identify the contributing exponential components. Here we extend previous methods of exponential sum-fitting to present a maximum-likelihood approach that consistently detects all significant exponentials without the need for user-specified starting parameters. Instead of searching for exponentials, the fitting starts with a very large number of initial exponentials with logarithmically spaced time constants, so that none are missed. Maximum-likelihood fitting then determines the areas of all the initial exponentials keeping the time constants fixed. In an iterative manner, with refitting after each step, the analysis then removes exponentials with negligible area and combines closely spaced adjacent exponentials, until only those exponentials that make significant contributions to the dwell-time distribution remain. There is no limit on the number of significant exponentials and no starting parameters need be specified. We demonstrate fully automated detection for both experimental and simulated data, as well as for classical exponential-sum-fitting problems.
Copyright © 2013 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Mesh:

Substances:

Year:  2013        PMID: 23746510      PMCID: PMC3672890          DOI: 10.1016/j.bpj.2013.04.030

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  22 in total

1.  Allosteric linkage between voltage and Ca(2+)-dependent activation of BK-type mslo1 K(+) channels.

Authors:  J Cui; R W Aldrich
Journal:  Biochemistry       Date:  2000-12-19       Impact factor: 3.162

Review 2.  Modes of glutamate receptor gating.

Authors:  Gabriela K Popescu
Journal:  J Physiol       Date:  2011-11-21       Impact factor: 5.182

3.  Time-resolved fluorescence of the single tryptophan residue in rat alpha-fetoprotein and rat serum albumin: analysis by the maximum-entropy method.

Authors:  M Gentin; M Vincent; J C Brochon; A K Livesey; N Cittanova; J Gallay
Journal:  Biochemistry       Date:  1990-11-13       Impact factor: 3.162

4.  Analyzing the distribution of decay constants in pulse-fluorimetry using the maximum entropy method.

Authors:  A K Livesey; J C Brochon
Journal:  Biophys J       Date:  1987-11       Impact factor: 4.033

5.  Sampling, log binning, fitting, and plotting durations of open and shut intervals from single channels and the effects of noise.

Authors:  O B McManus; A L Blatz; K L Magleby
Journal:  Pflugers Arch       Date:  1987-11       Impact factor: 3.657

6.  A novel use of differential equations to fit exponential functions to experimental data.

Authors:  J L Martin; D J Maconochie; D E Knight
Journal:  J Neurosci Methods       Date:  1994-03       Impact factor: 2.390

7.  A human congenital myasthenia-causing mutation (epsilon L78P) of the muscle nicotinic acetylcholine receptor with unusual single channel properties.

Authors:  Christopher Shelley; David Colquhoun
Journal:  J Physiol       Date:  2005-02-24       Impact factor: 5.182

8.  Activation of Shaker potassium channels. III. An activation gating model for wild-type and V2 mutant channels.

Authors:  N E Schoppa; F J Sigworth
Journal:  J Gen Physiol       Date:  1998-02       Impact factor: 4.086

9.  Coupling between voltage sensor activation, Ca2+ binding and channel opening in large conductance (BK) potassium channels.

Authors:  Frank T Horrigan; Richard W Aldrich
Journal:  J Gen Physiol       Date:  2002-09       Impact factor: 4.086

10.  Detection and trapping of intermediate states priming nicotinic receptor channel opening.

Authors:  Nuriya Mukhtasimova; Won Yong Lee; Hai-Long Wang; Steven M Sine
Journal:  Nature       Date:  2009-04-01       Impact factor: 49.962

View more
  2 in total

1.  Analyzing single-molecule time series via nonparametric Bayesian inference.

Authors:  Keegan E Hines; John R Bankston; Richard W Aldrich
Journal:  Biophys J       Date:  2015-02-03       Impact factor: 4.033

Review 2.  Single-channel kinetics of BK (Slo1) channels.

Authors:  Yanyan Geng; Karl L Magleby
Journal:  Front Physiol       Date:  2015-01-21       Impact factor: 4.566

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.