On the basis of first-principles density functional theory calculations, we propose a new molecular photoswitch which exploits a photochemical [1,3]-silyl(germyl) shift leading from a silane to a silene (a Si=C double bonded compound). The silanes investigated herein act as the OFF state, with tetrahedral saturated silicon atoms disrupting the conjugation through the molecules. The silenes, on the other hand, have conjugated paths spanning over the complete molecules and thus act as the ON state. We calculate ON/OFF conductance ratios in the range of 10-50 at a voltage of +1 V. In the low bias regime, the ON/OFF ratio increases to a range of 200-1150. The reverse reaction could be triggered thermally or photolytically, with the silene being slightly higher in relative energy than the silane. The calculated activation barriers for the thermal back-rearrangement of the migrating group can be tuned and are in the range 108-171 kJ/mol for the switches examined herein. The first-principles calculations together with a simple one-level model show that the high ON/OFF ratio in the molecule assembled in a solid state device is due to changes in the energy position of the frontier molecular orbitals compared to the Fermi energy of the electrodes, in combination with an increased effective coupling between the molecule and the electrodes for the ON state.
On the basis of first-principles density functional theory calculations, we propose a new molecular photoswitch which exploits a photochemical [1,3]-silyl(germyl) shift leading from a silane to a silene (a Si=C double bonded compound). The silanes investigated herein act as the OFF state, with tetrahedral saturated silicon atoms disrupting the conjugation through the molecules. The silenes, on the other hand, have conjugated paths spanning over the complete molecules and thus act as the ON state. We calculate ON/OFF conductance ratios in the range of 10-50 at a voltage of +1 V. In the low bias regime, the ON/OFF ratio increases to a range of 200-1150. The reverse reaction could be triggered thermally or photolytically, with the silene being slightly higher in relative energy than the silane. The calculated activation barriers for the thermal back-rearrangement of the migrating group can be tuned and are in the range 108-171 kJ/mol for the switches examined herein. The first-principles calculations together with a simple one-level model show that the high ON/OFF ratio in the molecule assembled in a solid state device is due to changes in the energy position of the frontier molecular orbitals compared to the Fermi energy of the electrodes, in combination with an increased effective coupling between the molecule and the electrodes for the ON state.
A single molecule that
functions as a molecular conductance switch
under external stimuli can be useful for molecular memory and logic
devices.[1,2] A broad range of molecular switches have
been reported in the literature,[2−4] activated with different kinds
of external stimuli. Light is a very attractive stimulus due to its
fast response time and compatibility with already existing experimental
setups.[4] The existing switches can roughly
be divided into two categories: redox/polarization switches,[5−7] where the molecule (or part of it) takes up or loses an electron,
or isomerization switches,[8−15] where the 3D-structure (geometry and/or connectivity) of the molecule
is changed. The basic requirements for a molecular reaction to be
suitable for switching applications are: (i) it must have high difference
in the magnitude of the conductance for the ON and OFF states, i.e.,
high switching ratio (SR), (ii) it must be stable, and (iii) it needs
a sufficiently high barrier between the ON and the OFF states to hinder
accidental (de)activation.[4]Isomerization
switches should ideally have the ON state represented
by a planar compound with a linearly conjugated path with maximal
pπ-orbital overlap. The compound representing the OFF state,
on the other hand, should have a disruption in its pπ-conjugation,
and such a disruption could be accomplished by a saturated molecular
segment (structural isomerization) or by a large
twist in the conjugated path (stereoisomerization). At the same time, for a possible use in a solid state device the
length of the molecule should stay essentially the same which has
been a major drawback for some of the previously studied molecular
photoswitches, i.e., azobenzenes.[11−13] Further, it should be
possible to switch the molecule between the two states with an external
stimulus, and most interesting is the possibility to switch in one
direction with one stimulus and in the other direction with another
stimulus.The [1,3]-silyl shift for formation of a Si=C
double bonded
compound, a so-called silene,[19−23] from an acyloligosilane is a structural isomerization that potentially
could be used for a novel type of molecular switch. This reaction
was used by Brook and co-workers to form the first isolable silene
in 1981 (Scheme 1).[16,17] Importantly, the acyloligosilanes such as 1a-OFF and 1b-OFF were turned into the Brook-silenes photolytically through
irradiation by mercury spot lamps. However, it was also observed that
the silenes rearranged back to the acyloligosilanes (e.g., silene 1b-ON has a half-life of 15.8 h at 25 °C in ether solution).[16] Silene 1a-ON, on the other hand,
could be observed spectroscopically (IR, UV, NMR) over a period of
two weeks at room temperature, during which it gradually rearranged
back to 1a-OFF. With regard to 1a-OFF/1a-ON, we report herein (vide infra) the calculated reaction energy for 1a-ON formation to be 51.2 kJ/mol, and the activation energy
for the thermal back-rearrangement from the silene to silane to be
82.1 kJ/mol (Scheme 1). In a recent computational
study, Eklöf, Guliashvili, and Ottosson found silene 1c-ON to be 20.1 kJ/mol higher in energy then 1c-OFF, and an activation barrier of 123.4 kJ/mol separated the silene
from the acyloligosilane.[18] This property
of the acyloligosilane/Brook-silene system should be possible to elaborate
further and potentially exploit in a molecular conductance switch.
The described activation energies for thermal back-rearrangements
from the silene to the silane to progress at moderately elevated temperatures
should be in the range 90–120 kJ/mol, and the reaction energies
for this process should be moderately exothermic.
Scheme 1
Photochemical [1,3]-Silyl Shift of Acyloligosilanes 1-OFF to Their Isomeric Brook-Silenes 1-ON and the Thermal
Back-Rearrangement (1a R = t-Bu, 1b R = Adamantyl,[16,17] and 1c R = Me[18])
Reaction and activation free
energies for the thermal processes of 1a computed at
the B3LYP/6-31G(d) level as reported herein (vide infra). Transition
state abbreviated as TS.
Photochemical [1,3]-Silyl Shift of Acyloligosilanes 1-OFF to Their Isomeric Brook-Silenes 1-ON and the Thermal
Back-Rearrangement (1a R = t-Bu, 1b R = Adamantyl,[16,17] and 1c R = Me[18])
Reaction and activation free
energies for the thermal processes of 1a computed at
the B3LYP/6-31G(d) level as reported herein (vide infra). Transition
state abbreviated as TS.Our earlier computational
study showed a distinct difference in
the relative energies between the Brook-type 1,1-dimethylsilenes as
compared to the analogous Brook-type 1,1-bis(trimethylsilyl)silenes
where the former have higher relative energies by 40–60 kJ/mol
compared to the latter species.[18] This
feature is interesting as an acyloligosilane/Brook-silene switch should
have the silene (the ON state) slightly higher in energy than the
acyloligosilane (the OFF state) so that a driving force for the thermal
back-rearrangement is established. Consequently, the relative energy
of silene versus acyloligosilane can be tuned by a proper choice of
substituents at the central Si. Moreover, a change from a migrating
silyl group to a migrating germyl (stannyl) group weakens the O–E
bond strength (EO = Si > Ge > Sn), raising the energy of the silene (ON) side.
Increased
steric bulk of the migrating group should also disfavor the acylsilane
(OFF) side as recently found by Bravo-Zhivotovskii et al.[24] Finally, one can expect that increased conjugation,
as found in the silenes studied herein, will lower the relative energies
of these species. Our initial model species for the acylsilane/Brook-silene
switches, together with their carbon analogues, are displayed in Scheme 2. These model silenes have a linearly conjugated
path stretching between the two ends of the molecule, whereas the
acyloligosilanes have an interruption. We first examine the acyloligosilane/Brook-silenes
in their trans-conformers with thiol end groups since
those (still) are ubiquitous anchors to gold electrodes, even though
a range of other groups with improved anchoring properties recently
have been identified.[25,26]
Scheme 2
Potential
Acyloligosilane/Brook-Silene Switches and Their Carbon
Analogues, Where R = −CC–C6H4–
for a and R = −C6H4–
for b
Thus,
we report on a new class of constitutional molecular switches
based on the [1,3]-silyl shift going from a silane to a silene. We
start by the linear acyloligosilane/Brook-silene molecules where we
calculate the reaction (rxn) and activation energies as well as the
transport properties using density functional theory (DFT) and nonequilibrium
Green’s functions (NEGF). However, based on our work on these
linear switches, we found that it is important to constrain the motion
when the system progresses along the reaction coordinate over the
transition state (TS). Consequently, these first candidates needed
to be further modified to perform optimally as molecular conductance
switches in solid state devices. The second half of the study is therefore
devoted to computational design of a set of more realistic molecular
switch candidates. Reaction and activation energies were computed
for the new cyclic silane/silene switches, where we also find constrained
motions. Furthermore, transport investigations reveal high switching
ratios. Using a single-level transport model, we estimate the location
of the most dominating level for electron transport (E0) and the broadening of the level (Γ) and their
influence on the switching ratio.
Computational Methods
Full geometry optimizations without symmetry constraints were carried
out with the Gaussian09 program package.[27] All geometry optimizations reported were performed with the B3LYP
hybrid density functional theory (DFT) method in combination with
the 6-31G(d) valence double-ζ basis set.[28−30] Frequencies
were computed to confirm that the calculated structures correspond
to local minima or transition states on the potential energy surface.The B3LYP hybrid DFT method was chosen as we earlier have found
that the deviations in the geometries of a set of 15 small substituted
silenes in a total of 27 different conformers, including silenes with
natural (Siδ+=Cδ−)
as well as reverse (Siδ−=Cδ+) bond polarization, when compared against CCSD/cc-pVTZ geometries,
are smallest for hybrid DFT methods.[31] Neither
MP2 nor generalized gradient approximation (GGA) DFT methods, as computationally
inexpensive methods, lead to better agreements. The M06-2X meta-hybrid
GGA DFT method[32,33] was found to give a slightly
better mean absolute deviation but, on the other hand, gave spurious
geometry deviations for a few of the test silenes when compared against
the CCSD geometries. We therefore based the present study on B3LYP
computations. The effect of the basis set on the calculated geometries
was also examined on the test set of small silenes mentioned above,
and it was revealed that the mean absolute deviation, as compared
to CCSD/cc-pVTZ, was 0.017 and 0.019 Å with regard to the Si=C
double bond lengths calculated at B3LYP/cc-pVTZ and B3LYP/6-31G(d),
respectively. For the 15-OFF/15-ON and 17-OFF/17-ON silane/silene switches, we also
examined the quality of the B3LYP/6-31G(d) calculations with regard
to basis set and with regard to treatment of sterically congested
situations (dispersion). B3LYP calculations with the 6-31G(d) valence
double-ζ basis set were compared against B3LYP calculations
with the 6-311+G(d,p) valence triple-ζ basis set,[34] and both reaction and activation energies when
calculated at the B3LYP/6-311+G(d,p)//B3LYP/6-31G(d) level were found
to agree well (see Supporting Information). When the B3LYP/6-31G(d) energies are compared against calculations
with the M06-2X hybrid meta GGA functional, i.e., a dispersion corrected
functional which is better able to describe sterically congested situations,
it was also found that the deviations in energies were modest (see Supporting Information).Time-dependent
DFT (TD-DFT) calculation were carried out with B3LYP
in combination with a 6-311+G(2d,p) basis set, considering ten transitions
each (singlets and triplets).Transport calculations were carried
out from first principles with
a method based on nonequilibrium Green’s functions (NEGF) combined
with DFT as implemented in the TranSIESTA package.[35] The relaxed molecular structures were inserted as their
dithiolates between two Au[111] surfaces and relaxed once more to
optimize the Au–S bonding. The device consists of three parts:
left electrode, molecule, and right electrode. The electrodes are
modeled by six layers of gold atoms where the three outer layers are
relaxed, while the others are kept at the experimental bulk positions.
In the lateral dimension a 6 × 6 supercell (17.5 Å ×
17.5 Å) was used, large enough to remove interactions between
periodic images. All relaxations are performed at the DFT level with
the SIESTA package,[36,37] and core electrons are modeled
using Troullier-Martins[38] soft norm-conserving
pseudopotentials. The valence electrons are expanded in a basis set
of local orbitals using a double-ζ plus polarization orbital
(DZP) set for electrons in the molecule and a single-ζ plus
polarization orbital (SZP) for electrons in the gold electrode. The
GGA was used for the exchange-correlation functional.[39]
Results and Discussion
Structural Calculations of Isolated Acyloligosilanes
and Brook-Silenes
The OFF states of switches 2a, 2b, 3a, and 3b were optimized
in the anti-conformers, and the ON states were optimized
as E-isomers to match the expected structures of
a rigidly confined acyloligosilane/Brook-silene
switch. For these species, it becomes clear that for the two acyloligosilane/Brook-silene
pairs the acyloligosilane and the silene side are nearly isoenergetic
(see Table 1), while for the all-carbon α-silylketone/siloxyalkene pair the alkene is much lower in energy. The very
large difference in relative energy for the two sides of the all-carbon
pairs can not be changed significantly through substitution, and our
calculations thereby reveal why the [1,3]-silyl shift to form an alkene,
and the reverse reaction, are not suitable to function as a reversible
molecular switch. The [1,3]-shift of a silyl group from the α-carbon
of a ketone to the carbonyl oxygen is thus a purely hypothetical molecular
switching reaction. However, with a suitable tailoring of the acyloligosilane/Brook-silene
switch pair, it should be possible to design a system with the silene
slightly above the acyloligosilane in energy and which has an activation
energy for the thermal back-reaction which is reasonably high (90–120
kJ/mol) so that moderately elevated temperatures can be used to turn
off the switch. The activation energy for the [1,3]-silyl shift from 1a-OFF to 1a-ON is calculated to be 133.3 kJ/mol
at the B3LYP/6-31G(d) level, but the activation energy for the back-reaction
taken relative to 1a-ON is only 82.1 kJ/mol. As this
silene gradually rearranged back to the silane during a period of
two weeks, it is obvious that the barrier for a silane/silene switch
needs to be slightly higher.
Table 1
Free Energies for
Silyl Shifts from
OFF to ON States (Schemes 1 and 2)
S···S distancea
compound
ΔGrxnb
ΔGOFF →ON (ON→OFF)⧧c,d
ON
OFF
TS
1a
51.2
133.3 (82.1)
-
-
-
2a
–20.5
125.4 (145.9)
18.63
18.50
11.72
2b
1.0
116.8 (115.7)
13.57
13.54
9.51
2b*e
1.0
191.1e (190.0)e
13.57
13.54
13.54e
3a
–105.0
-
18.09
17.99
-
3b
–140.7
-
12.99
12.35
-
Distance between thiol end groups
[Å].
Reaction free
energy [kJ/mol].
Free energy
of activation relative
to the OFF-state (normal print) [kJ/mol].
Free energy of activation relative
to the ON-state (in italics) [kJ/mol].
Restricted S···S
distance.
Distance between thiol end groups
[Å].Reaction free
energy [kJ/mol].Free energy
of activation relative
to the OFF-state (normal print) [kJ/mol].Free energy of activation relative
to the ON-state (in italics) [kJ/mol].Restricted S···S
distance.Importantly, the
S···S distances within each of
the four pairs stay essentially constant when going from the OFF structure
to the ON structure; however, investigations of the transition states
revealed that the migration of the silyl group requires a significant
rotation around the central Si–C bond. This rotation induces
a large motion of the two thiol anchors during the (thermal) rearrangement
and consequently a significant shortening of the S···S
distance to 9.57 Å for 2b-TS, i.e., a reduction
by approximately 4 Å. Attempts to mimic the rather fixed distance
situation, as would be seen in a solid-state setup, by virtually fixing
the S···S distance to 13.54 Å resulted in a large
increase in the activation energy from 115.7 to 190.0 kJ/mol of 2b-TS, a prohibitively high activation barrier for thermal
back-rearrangement at reasonably elevated temperatures.Brook
and co-workers used acyloligosilane 1a-OFF (Scheme 1) to form silene 1a-ON, which has UV/vis
absorption maxima at 348 nm (ε = 100) and 339 nm (ε =
5200), respectively, showing good agreement with TD-DFT calculated
values of 362 nm (oscillator strength f = 0.0118)
for 1a-OFF and 351 nm (f = 0.2165) for 1a-ON. The presently investigated acyloligosilanes 2a-OFF and 2b-OFF have their computed lowest UV/vis absorptions
with significant calculated oscillator strengths at 395.7 nm (f = 0.1194) and 381.3 nm (f = 0.0352),
respectively (see Supporting Information). From this we can conclude that the present silane/silene pairs
could form the basis for a light-driven molecular switch under the
condition that the motion along the reaction path is constrained.
Current–Voltage Characteristics of Linear Switches
To estimate the switching properties of the acylsilane to silene
transition, we performed first-principles DFT calculations for the
acetylenic compounds (2a/3a) shown in Scheme 2. Compounds (2b/3b) showed a different
behavior in the electrode setup which is briefly discussed in the Supporting Information. The current response
for bias voltages of ±0.1, ±0.2, ±0.5, and ±1.0
V are shown in Figure 1. Looking at trends
in the current response, both compounds 2/3a-OFF and 2/3a-ON show a similar behavior with a linear increase of
the current for low voltages and more rapidly increasing current at
higher voltages. To investigate their performance as switches, we
calculate the ON/OFF switching ratio of the current for both the zero-bias
limit as well as for a bias of +1 V. Due to the unsymmetric nature
of these molecules, we also investigate if they have a rectifying
property on the current, hence if they could function as diodes.[40] These results are shown in Table 2. The ON/OFF ratio is higher for compound 2a compared
to the all-carbon switch 3a. From Figure 1 it can be seen that this is due to a more conducting OFF
state for 3a, while the current response is very similar
for the two ON states. When going to higher biases, the switching
ratio decreases due to the stronger current response from the low-conducting
acyloligosilanes and ketones when the bias is increased.
Figure 1
Calculated current–voltage (I–V) characteristics for OFF and ON state structures of compounds 2a and 3a, respectively. Note the different scales
for the calculated currents in the ON and OFF states.
Table 2
Current Characteristics of 2a and 3a
compound
SRa (0 V)
SRa (1 V)
RRb
2a-OFF
270
39
2.6
2a-ON
0.9
3a-OFF
31
15
1.4
3a-ON
0.9
Conductance ON/OFF switching ratio.
Rectifying ratio, calculated as
the ratio between the currents at bias voltages of +1 and −1
V.
Calculated current–voltage (I–V) characteristics for OFF and ON state structures of compounds 2a and 3a, respectively. Note the different scales
for the calculated currents in the ON and OFF states.Conductance ON/OFF switching ratio.Rectifying ratio, calculated as
the ratio between the currents at bias voltages of +1 and −1
V.To explore the physical
mechanisms behind the switching, we start
by calculating the partial density of states (PDOS) for the junctions
with 2a under equilibrium conditions. The density of
states spatial distribution[41] can be calculated
by summing up the states in the transverse direction and normalizing
to the atomic density. This gives the number of states/(eV ×
Å × atom) along the transport direction which is shown in
Figure 2, where the x-axis
is the coordinate along the transport direction and the y-axis shows the energy (E – EF) for the state, where the magnitude of the DOS is indicated
by the color, from blue (low) to red (high).
Figure 2
Space resolved normalized
density of states at zero bias for the
junctions with compound 2a. The OFF state is shown in
the top panel and the ON state in the bottom panel. The space resolved
density of states have the transport coordinate on the x-axis and the energy of the state on the y-axis.
The color scale goes from blue (low density of states) to red (high
density of states).
Space resolved normalized
density of states at zero bias for the
junctions with compound 2a. The OFF state is shown in
the top panel and the ON state in the bottom panel. The space resolved
density of states have the transport coordinate on the x-axis and the energy of the state on the y-axis.
The color scale goes from blue (low density of states) to red (high
density of states).For 2a-OFF the HOMO of the molecule is located about
0.5 eV below the Fermi level (EF) of the
electrodes and is not so well coupled to the electrodes. The electronic
states in the molecule that are induced by the interaction with the
metallic electrodes are often referred to as metal-induced gap states
(MIGS).[41] MIGS can be seen in the spatial
DOS plot as light-blue protrusions penetrating into the molecule from
both electrodes but rapidly decaying toward the center of the switch.The [1,3]-silyl shift leads to the formation of 2a-ON (3a-ON) having a Si=C (C=C) double bond.
The DOS spatial distribution for 2a-ON (bottom panel)
shows that the HOMO of the molecule is shifted closer to EF, and at the same time it is delocalized over the molecule
and coupled to both electrodes. MIGS are seen to extend much longer
into the molecule. Coupling of the HOMO to the electron states in
the electrodes causes broadening of the DOS peak. We see two light
blue “satellites” of the HOMO slightly above and below
in energy in the DOS spatial distribution plot created by the extended
MIGS overlapping with the broad HOMO peak. The broadening and delocalization
of the HOMO and surrounding MIGS create a relatively smooth DOS close
to the Fermi level. This density is responsible for the absence of
current onset around the position of the HOMO (∼0.2 or ∼0.4
V bias), when increasing the bias voltage for 2a-ON (3a-ON).Furthermore, we show the wave function of the
most conducting scattering
state at zero bias in Figure 3.[42] The isosurface of the scattering state has different
colors depending on the phase (+1, −1, +i,
−i) as explained in the figure caption. The
magnitudes of the isosurface lobes indicate where the electrons incoming
from the left electrode are traveling since the absolute square of
the wave function corresponds to the density of traversing electrons.
For a wave, incoming from the left and which is mostly reflected,
the real part will show an exponential decay into the junction from
the left, while the imaginary part will be very small and in most
cases not visible (if the same isovalue is used when plotting). As
in the case of DOS spatial distribution for 2a-OFF, the
scattering state (top panel) shows a very weak coupling through the
central Si–C bond, where the real part of the state decays
rapidly from the left into the junction indicating that in this case
we have a poor conductor acting as a tunneling barrier. The imaginary
part of the wave function is not visible due to the low transmission
of the channel and that the wave function is chosen to be real at
the incoming side.
Figure 3
Visualization of the most transmitting eigenchannel wave
function
(incoming from the left electrode) at the Fermi energy for the junctions
with compound 2a. OFF state shown in the top panel and
ON state in the bottom panel. The isosurfaces of the eigenchannel
wave function are colored according to phase and sign, the positive/negative
real part being colored in deep-purple/light-blue (the imaginary part
is below the cutoff value and not visible), and both junctions plotted
with the same isovalue to be comparable.
Visualization of the most transmitting eigenchannel wave
function
(incoming from the left electrode) at the Fermi energy for the junctions
with compound 2a. OFF state shown in the top panel and
ON state in the bottom panel. The isosurfaces of the eigenchannel
wave function are colored according to phase and sign, the positive/negative
real part being colored in deep-purple/light-blue (the imaginary part
is below the cutoff value and not visible), and both junctions plotted
with the same isovalue to be comparable.From the scattering state of 2a-ON (bottom panel)
the Si=C double bond formed from the [1,3]-silyl shift shows
a good connection through the central bridge providing a higher conductance
through the MIGS at the Fermi level. It is still almost only the real
part of the wave function that is visible, but it does not decay as
fast into the junction. From the shape of the lobes we can see that
the main transport goes through the pπ-orbital system of the
molecule. Similar conclusions can be drawn for 3a; i.e.,
for the ON state we have a very good linear conjugation through the
complete molecule, while for the OFF state the conjugation is broken
in the central unit due to the Si–C (C–C) single bond;
hence, the transmission drops significantly.
Design of Realistic Silane/Silene
Switches
Even though
the studies of reaction thermodynamics as well as electron transport
of 2a,b reveal that these compounds exhibit
the desired properties, the large structural change along the reaction
pathway led us to a redesign. In particular, the twisting about the
central SiC bond that takes place during the [1,3]-silyl shift, leading
to drastic variations in the S···S distance during
the reaction, needs to be reduced, and a silane/silene unit with less
conformational flexibility is required. This can be accomplished by
introduction of a fused cyclic system that would prevent large motions
leading to/from the TS. However, this restricted system must not have
a raised energy of the TS state as this would hamper a thermal back-reaction.
To provide a cyclic system with an overall pπ-conjugated pathway
in the ON state, we designed a five-membered ring with a central SiC
unit having a Si=C double bond and two neighboring exocyclic
C=C double bonds. To accommodate for steric congestion, either
a benzene or a phenylacetylene group is attached to the double bonds
in an all-trans arrangement. To provide suitable
anchors, we kept the thiol groups in para-positions
of the phenyl moieties. Our initial studies on the linear silane/silene
systems indicate approximately the desired thermodynamic and kinetic
properties for a light-triggered ON switch with a back-reaction which
is thermally feasible. One advantage of this rearrangement is the
possibility of tuning both thermodynamics and kinetics by slight variations.
For our further investigations on the cyclic systems, we focused on
three parameters: the nature of the migrating group (silyl or germyl),
the steric bulk of the migrating group (EMe3 or EtBu2Me, where E = Si or Ge), and the acceptor group (A
= O or = NMe) (Figure 4).
Figure 4
Suggested cyclic molecular
conductance switches with different
acceptor moieties and migrating groups. A = NMe or O, and R = SiMe3, SitBu2Me, GeMe3, or GetBu2Me.
Suggested cyclic molecular
conductance switches with different
acceptor moieties and migrating groups. A = NMe or O, and R = SiMe3, SitBu2Me, GeMe3, or GetBu2Me.Relative reaction energies for the extended cyclic silane/silene
switches. Blue bars denote N acceptor groups (A = NMe), while red
bars denote the oxygen acceptors (A = O).Simple variation of these three parameters gives a tremendous
impact
on the reaction thermodynamics (Table 3). While
the silyl migrating groups in combination with an oxygen acceptor
favor the ON state (from 1.1 to 52.5 kJ/mol), migration to the nitrogen-based
acceptor (an imine in the OFF state) is strongly dependent on the
steric bulk of the silyl group (Figure 5).
There are further general trends in our calculations. Changing the
central atom of the migrating group from silicon to germanium favors
the OFF state by up to 76 kJ/mol, depending on the steric demand of
the alkyl substituents and the acceptor group. However, a general
trend for the two different acceptor groups was not found. We further
investigated the transition states for the thermal rearrangement of
the cyclic silane/silene combinations with the most promising thermodynamic
properties. Introduction of the five-membered ring results in a reduced
TS motion and, moreover, provides suitable kinetic parameters. The
activation energies relative to the OFF states are 126–160
kJ/mol. The ON states are in most cases higher in relative energy,
which will allow for a thermal back-rearrangement at (slightly) elevated
temperatures as the activation free energies for all except one system
are gathered in the range 108–144 kJ/mol. The drawbacks of
the linear systems, i.e., the large motion leading to/from the TS,
were also successfully circumvented by the cyclic silane/silene switches.
The largest absolute displacements were calculated to be in the range
0.2–2.0 Å, which corresponds to relative motions of less
than 10% of the absolute S···S distance. We assume
that these small changes can easily be balanced by lateral movement
on the gold substrates, without significant changes in reaction energies.
Table 3
Free Energy for Silyl Shifts from
OFF to ON States for Cyclic Compounds (Figure 4)
S···S distancea
compound
ΔGrxnb
ΔGOFF →ON (ON→OFF)⧧c,d
ON
OFF
TS
4
–1.1
159.0 (160.0)
15.2
15.1
15.3
5
–52.5
-
15.1
15.2
-
6
64.9
-
15.4
15.2
-
7
40.8
-
15.1
15.2
-
8
24.8
132.7 (107.8)
15.2
13.7
14.8
9
–0.4
126.9 (128.4)
14.5
14.3
15.2
10
63.8
-
14.9
14.4
-
11
76.0
-
14.7
14.5
-
12
–6.8
164.4 (171.1)
18.8
19.2
19.4
13
–42.5
-
18.6
18.6
-
14
59.4
-
19.2
19.3
-
15
33.2
158.6 (125.4)
18.3
18.5
19.5
16
11.7
139.7 (128.1)
18.6
17.9
19.0
17
15.7
159.8 (144.2)
17.0
17.8
19.0
18
49.0
-
18.5
18.1
-
19
61.0
-
17.4
17.9
-
Distance between thiol end groups
[Å].
Reaction free
energy [kJ/mol].
Free energy
of activation relative
to the OFF state (normal print) [kJ/mol].
Free energy of activation relative
to the ON state (in italics) [kJ/mol].
Figure 5
Relative reaction energies for the extended cyclic silane/silene
switches. Blue bars denote N acceptor groups (A = NMe), while red
bars denote the oxygen acceptors (A = O).
Distance between thiol end groups
[Å].Reaction free
energy [kJ/mol].Free energy
of activation relative
to the OFF state (normal print) [kJ/mol].Free energy of activation relative
to the ON state (in italics) [kJ/mol].To prove the viability of photochemically
induced silene formation
we also performed TD-DFT calculations for the extended cyclic systems 16 and 17 in their ON and OFF configurations.
For compound 16-OFF, the first allowed UV/vis transition
should occur at around 416 nm (f = 0.0424) with a
stronger absorption at 404 nm (f = 0.2193). Similarly,
but slightly red-shifted, we found for 17-OFF a weaker
(417 nm, f = 0.0342) and a stronger (407 nm, f = 0.1301) transition. The extension of the pπ-system
in the corresponding silenes, 16-ON and 17-ON, is also clearly reflected in the calculated UV/vis spectra of compounds 16-ON (556 nm, f = 1.1302) and 17-ON (544 nm, f = 0.9959) as shown by their longest
wavelength absorptions. These long-wavelength absorptions for the
ON states potentially allow the suggested switches to operate in a
reversed manner, in which the ON states might rearrange to the corresponding
silanes by irradiation with visible light. However, 16-ON and 17-ON also absorb at the shorter wavelengths, and
this feature may potentially complicate the formation of the silenes,
which when formed can absorb the irradiation used for their generation
and photorearrange back to the silanes. Yet, detailed computational
and experimental studies and optimization of the photochemistry of
the cyclic silane/silene switches are outside the scope of the present
investigation. For example, for an optimal silane/silene switch the
position of the photostationary state needs to be optimized so that
predominantly the silene is formed upon irradiation at the chosen
wavelength.
Current–Voltage Characteristics of
Cyclic Switches
The current–voltage characteristics
have been examined by
DFT-NEGF calculations, and due to computational cost we have chosen
to study the compounds 4, 12 (O-acceptor
and trimethylsilyl migrating group), 8, 16 (NMe-acceptor and trimethylsilyl migrating group), and 17 (NMe-acceptor and SiMetBu2 migrating group)
here. The current–voltage results and their switching ratios
are shown in Figure 6 and Table 4, respectively. Compared to the previous linear compound,
we find larger switching ratios at zero bias. By introducing the cyclic
unit interference effects, similar to those observed by Solomon et
al. in phenyl rings,[43] appear in the OFF
compounds lowering their transmission close to EF. This partly explains the higher switching ratios at low
bias. The interference effects can clearly be seen in the transmission
spectra where there are several pronounced dips for the OFF compounds
with the phenylacetylene group (−CC–Ph) shown in the
top panel of Figure 7. For the shorter compounds
(4, 8) transmission in the σ-system
of the molecules can now start to play an important role, and this
can hide interference effects in the pπ-system. In the top (bottom)
panels of Figure 8 the local currents[42,44] in compound 16 are shown for the OFF (ON) state. For
the OFF state we find that the interference arises due to ring currents
in the ring segment with three saturated carbon atoms. On the other
hand, for the ON state we observe an undisturbed current path which
follows the pπ-conjugated path through the molecule.
Figure 6
Current–voltage of cyclic switches and model calculations.
Markers denote values obtained from the DFT-NEGF calculations, while
the full lines are obtained from the model calculations. Note the
different scales for the calculated currents in the ON and OFF states.
Table 4
Current–Voltage Characteristics
of Cyclic Compounds
DFT-NEGF
calculations
model
calculations
compound
SRa (0 V)
SRa (1 V)
RRb
E0c (eV)
Γd (meV) (= (ΓRΓL)1/2)
ε– (ε+)e
ΓR/ΓLf
4-OFF
718
13
11.8
0.46
5.5
7.5 (104.3)
13.9
4-ON
1.0
0.08
55.0
2.4 (2.4)
1.0
8-OFF
503
45
1.0
0.50
7.7
24.5 (24.5)
1.0
8-ON
1.4
0.16
36.9
7.2 (5.0)
0.7
12-OFF
203
4
8.7
0.49
4.3
12.8 (74.2)
5.8
12-ON
1.1
0.06
5.7
4.3 (2.5)
0.6
16-OFF
314
17
1.6
0.54
10.1
16.7 (43.4)
2.6
16-ON
1.1
0.09
18.7
3.4 (2.8)
0.8
17-OFF
1157
41
2.3
0.52
13.9
3.6 (7.6)
2.1
17-ON
1.2
0.08
50.0
2.5 (2.6)
1.1
Conductance ON/OFF switching ratio.
Rectifying ratio, calculated as
the ratio between the current at bias voltage +1 and −1 V.
Distance between the most conducting
level and EF (V = 0).
Effective coupling between
the most
conducting level and the electrodes.
Proportionally factor for movement
of the conducting level under bias (Ẽ0 = E0 ± (V/ε±) for ± V, ε+ = ε–ΓR/ΓL).
A measure of
the unsymmetry of the
effective coupling to the electrodes.
Figure 7
Transmission spectra, at zero bias (V = 0), for
the OFF compounds (top panel) and the ON compounds (bottom panel).
Figure 8
Local currents in compound 16-OFF (top panel) and 16-ON (bottom panel), where the cross-sectional
area of the
cylinder is proportional to the current density. Red currents represent
positive transport direction, and blue currents represent negative
direction. The currents are calculated at the Fermi energy ((μL + μR)/2), but a small positive bias voltage
is assumed for calculation purposes. For a full derivation see Okabayashi
et al.[44] and Paulsson and Brandbyge.[42]
Conductance ON/OFF switching ratio.Rectifying ratio, calculated as
the ratio between the current at bias voltage +1 and −1 V.Distance between the most conducting
level and EF (V = 0).Effective coupling between
the most
conducting level and the electrodes.Proportionally factor for movement
of the conducting level under bias (Ẽ0 = E0 ± (V/ε±) for ± V, ε+ = ε–ΓR/ΓL).A measure of
the unsymmetry of the
effective coupling to the electrodes.Current–voltage of cyclic switches and model calculations.
Markers denote values obtained from the DFT-NEGF calculations, while
the full lines are obtained from the model calculations. Note the
different scales for the calculated currents in the ON and OFF states.Transmission spectra, at zero bias (V = 0), for
the OFF compounds (top panel) and the ON compounds (bottom panel).Local currents in compound 16-OFF (top panel) and 16-ON (bottom panel), where the cross-sectional
area of the
cylinder is proportional to the current density. Red currents represent
positive transport direction, and blue currents represent negative
direction. The currents are calculated at the Fermi energy ((μL + μR)/2), but a small positive bias voltage
is assumed for calculation purposes. For a full derivation see Okabayashi
et al.[44] and Paulsson and Brandbyge.[42]At higher bias, the switching ratio drops to moderate levels
for
the cyclic compounds similar to the linear analogues. As in the case
of the reaction energies we see that the NMe acceptor groups (compounds 8, 16, 17) are the most promising
candidates with switching ratios on par or higher compared to other
compounds studied here and in previous investigations.[2,10,14,45] Introduction of the bulkier migration group (SiMetBu2, compound 17) not only will provide higher steric
protection and hence higher kinetic stability but also enhances the
switching ratio. The ON compounds have rectification ratios (RR) close
to unity, which is beneficial for practical applications since there
will be no directional dependence when running a current through the
switch. On the other hand, some of the OFF compounds have large RR
(especially compounds with O-acceptor, 4 and 12 in Table 4), opening the possibility to use
them as diodes. For switch applications, the RR of the OFF compound
is not important since there should be no (or only a negligible) current
running through them, but it will give a difference in SR between
+1 V and −1 V (here, for RR > 1, the SR at −1 V will
be larger than the SR at 1 V).Similar to Kim et al.[10,14] we apply a simple single-level
transport model to investigate the influence of the effective coupling
(ΓL,ΓR) to the left and the right
electrode, and the distance between the closest molecular orbital
(E0) and EF of the electrodes on the current. From the Landauer formula[46,47] the transmission is obtained asWe started
by considering a static level and symmetric coupling
to the electrodes as the earlier literature suggested.[10] Results from this model could not explain our
findings. To describe our systems, we had to expand the model with
a level that could move with the potential level in the electrodes
under bias (Ẽ0 = E0 ± (V/ε±)
for ± V, see Table 4 for
values of ε) and nonsymmetric coupling to the electrodes. The
parameters obtained from the model are given in Table 4, showing that the unsymmetry of the coupling (ΓL/ΓR) we find from our model agree reasonable
well with the RR of the molecules. The results from the model are
shown in Figure 6 (full lines), together with
the DFT-NEGF results (markers). As can be seen from the figure, this
extended model can explain our results reasonably well. From this
model we can locate the most conducting MO at about 0.5 eV below EF for the OFF states and almost resonant (0.05–0.15
eV below EF) for the ON states. This can
be compared with the transmission spectra at zero bias (shown in Figure 7) from the DFT-NEGF calculations, and we find that
the peaks in the spectra are located at similar values as obtained
from the model (a comparison between transmission spectra at different
biases from DFT-NEGF and our model is shown in the Supporting Information). From the model results we are able
to deduce the important parameters affecting the SR. In Figure 9 the magnitude of the SR (symbolized by the size
of the filled circles) is shown as a function of the change in coupling
to the electrodes (Γ = (ΓLΓR)1/2) and the change in distance between the closest MO
and EF. The switching occurs due to either
a change of the distance between the closest MO and EF, a change in the coupling between the MO and the electrodes,
or a combination of both. To have a large SR ideally the molecule
should be in the top right corner of Figure 9, hence it is favorable to have both a large change in distance between EF and the closest MO and a large change in the
coupling between the electrodes and the MO.
Figure 9
Magnitudes of the switching
ratio (SR) as a function of the change
of the closest MO (ΔE0) and the
coupling between the MO and the electrodes (ΔΓ).
Magnitudes of the switching
ratio (SR) as a function of the change
of the closest MO (ΔE0) and the
coupling between the MO and the electrodes (ΔΓ).The behavior of the compounds
studied here is different compared
to the photoswitches studied previously by Kim et al. for which they
obtained switching due to the change either in coupling to the electrodes[10] or in the relative position of the MO.[14] By the possibility to change both the coupling
and the relative position of the MO, as in the case for compounds 4 and 17, we can obtain a higher switching ratio
compared to previous studied molecular photoswitches. At the same
time the three criteria (i–iii) in the Introduction are fulfilled. Thus, they should represent good candidates of a
new set of molecular conductance switches.
Stability and Realization
As pointed out by our criteria
to a molecular switch, stability plays an important role, which is
especially relevant to the suggested silane/silene based systems.
It is known that silanes (OFF states) are persistent species at ambient
conditions and could easily be inserted between two gold electrodes
prior to switching applications. However, the silenes (ON states)
are reactive, moisture sensitive, and have a high dimerization aptitude.[23] The situation can be significantly changed when
the silanes are immobilized between the gold electrodes, and provided
the concentration of silanes on the surface is low, the resulting
spatial separation between the silenes when formed during switching
will inhibit dimerization as a possible decomposition pathway. Moreover,
the environment on the gold surface around the silane/silene switch
can be covered by unreactive alkanethiols or alkanedithiols, e.g.,
as recently developed by us in a Au nanoparticle/nanoelectrode setup.[48] The incorporation of the silanes could be carried
out by place-exchange.[49] The dimerization
aptitude of the silenes may also be reduced through a range of bulky
substituents. The moisture sensitivity, on the other hand, is delicate,
and the acylsilane/Brook-silene must likely operate under moisture-free
conditions. However, reverse polarization, i.e., as observed for oxygen-
or amino-substituted systems,[50] reduces
moisture sensitivity of these silenes and might significantly increase
the stability of the suggested molecular switches. For example, we
found recently that 2-amino-2-siloxysilenes, which are transient silenes
extensively influenced by reverse Si=C bond polarity (Siδ−=Cδ+), are unreactive
to alcohols.[51] It has also been observed
that 1-silaallenes, i.e., Si=C double bonded compounds with
an inherent Siδ−=Cδ+ polarization influence, become resistant to water when they bear
substituents with large steric bulk.[52]
Conclusions and Outlook
In conclusion, we have introduced
a new class of synthetically
realistic compounds that can perform as molecular conductance switches
which could be triggered by light and/or thermal energy. Moreover,
we were able to confirm that these switches fulfill the criteria for
a useful reversible molecular switch, as given in the Introduction, i.e., a high ON/OFF conductance ratio, high
enough barrier separating the two states, and a possibility to realize
the switch in a solid state device. The reaction investigated is the
[1,3]-silyl (germyl) shift from a low-conducting silane to a conducting
silene, and the charge transport characteristics are investigated
using DFT-NEGF calculations and a simple Landauer model. We started
with a set of linear molecules and found by DFT-calculations that
they can be switched photochemically in one way and switched back
thermally. The single-molecule conductance showed good switching ratios
at low bias; however, it was also found that large length variations
when progressing along the reaction coordinate, especially at the
TS, hamper their potential use as a solid state device.To overcome
this last issue we propose a cyclic central unit of
the molecule reducing the flexibility while at the same time keeping
the switching properties of the linear molecules. Calculations further
show that we can tailor the reaction dynamics of the compounds, in
terms of both reaction barrier (kinetics) and energy (thermodynamics)
between the two states by changing the acceptor unit and/or the migration
group. We find that the switching ratio is increased going from the
linear molecules to the cyclic, and it is 200 or greater for all considered
molecules at zero-bias voltage.We have further analyzed the
transport mechanism using the most
conducting scattering state, the density of states in the junction,
and a single-level Landauer model. We find that for the OFF states
we have a MO localized in the central part of the molecule about 0.5
eV below EF. We also see interference
effects in some of the OFF states decreasing the transmission further.
For the ON states, on the other hand, we have a delocalized π-electron
system spanning the whole molecule and metal-induced gap states at EF increasing the effective coupling to the electrodes.
The most conducting MO is now (almost) resonant, enhancing the conductance
significantly.These results should be of great interest for
the development of
a solid state switch or memory device with a high ON/OFF conductance
ratio and the possibility to be switched by two different stimuli
(photochemically and thermally). With this study we propose a rearrangement
and a class of compounds which are completely new to the field of
molecular electronics, thus expanding the pool of compounds used in
this research area.
Authors: Emilio Artacho; E Anglada; O Diéguez; J D Gale; A García; J Junquera; R M Martin; P Ordejón; J M Pruneda; D Sánchez-Portal; J M Soler Journal: J Phys Condens Matter Date: 2008-01-24 Impact factor: 2.333
Authors: Sense Jan van der Molen; Jianhui Liao; Tibor Kudernac; Jon S Agustsson; Laetitia Bernard; Michel Calame; Bart J van Wees; Ben L Feringa; Christian Schönenberger Journal: Nano Lett Date: 2009-01 Impact factor: 11.189
Authors: Haixing Li; Marc H Garner; Zhichun Shangguan; Qianwen Zheng; Timothy A Su; Madhav Neupane; Panpan Li; Alexandra Velian; Michael L Steigerwald; Shengxiong Xiao; Colin Nuckolls; Gemma C Solomon; Latha Venkataraman Journal: Chem Sci Date: 2016-05-30 Impact factor: 9.825