Literature DB >> 23737524

Roles of long-range electrostatic domain interactions and K+ in phosphoenzyme transition of Ca2+-ATPase.

Kazuo Yamasaki1, Takashi Daiho, Stefania Danko, Hiroshi Suzuki.   

Abstract

Sarcoplasmic reticulum Ca(2+)-ATPase couples the motions and rearrangements of three cytoplasmic domains (A, P, and N) with Ca(2+) transport. We explored the role of electrostatic force in the domain dynamics in a rate-limiting phosphoenzyme (EP) transition by a systematic approach combining electrostatic screening with salts, computer analysis of electric fields in crystal structures, and mutations. Low KCl concentration activated and increasing salt above 0.1 m inhibited the EP transition. A plot of the logarithm of the transition rate versus the square of the mean activity coefficient of the protein gave a linear relationship allowing division of the activation energy into an electrostatic component and a non-electrostatic component in which the screenable electrostatic forces are shielded by salt. Results show that the structural change in the transition is sterically restricted, but that strong electrostatic forces, when K(+) is specifically bound at the P domain, come into play to accelerate the reaction. Electric field analysis revealed long-range electrostatic interactions between the N and P domains around their hinge. Mutations of the residues directly involved and other charged residues at the hinge disrupted in parallel the electric field and the structural transition. Favorable electrostatics evidently provides a low energy path for the critical N domain motion toward the P domain, overcoming steric restriction. The systematic approach employed here is, in general, a powerful tool for understanding the structural mechanisms of enzymes.

Entities:  

Keywords:  Bioenergetics; Calcium ATPase; Domain Motion; Electrostatic Interaction; Enzyme Mechanisms; Enzyme Structure; Enzyme Structure and Function; Kinetics; Molecular Modeling; Mutagenesis Site Specific

Mesh:

Substances:

Year:  2013        PMID: 23737524      PMCID: PMC3711328          DOI: 10.1074/jbc.M113.482711

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  34 in total

1.  Crystal structure of the calcium pump of sarcoplasmic reticulum at 2.6 A resolution.

Authors:  C Toyoshima; M Nakasako; H Nomura; H Ogawa
Journal:  Nature       Date:  2000-06-08       Impact factor: 49.962

2.  Structural changes in the calcium pump accompanying the dissociation of calcium.

Authors:  Chikashi Toyoshima; Hiromi Nomura
Journal:  Nature       Date:  2002-08-08       Impact factor: 49.962

3.  PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations.

Authors:  Todd J Dolinsky; Jens E Nielsen; J Andrew McCammon; Nathan A Baker
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

4.  Crystal structure of the calcium pump with a bound ATP analogue.

Authors:  Chikashi Toyoshima; Tatsuaki Mizutani
Journal:  Nature       Date:  2004-06-30       Impact factor: 49.962

Review 5.  The sarcoplasmic Ca2+-ATPase: design of a perfect chemi-osmotic pump.

Authors:  Jesper V Møller; Claus Olesen; Anne-Marie L Winther; Poul Nissen
Journal:  Q Rev Biophys       Date:  2010-11       Impact factor: 5.318

6.  Organization of cytoplasmic domains of sarcoplasmic reticulum Ca(2+)-ATPase in E(1)P and E(1)ATP states: a limited proteolysis study.

Authors:  S Danko; K Yamasaki; T Daiho; H Suzuki; C Toyoshima
Journal:  FEBS Lett       Date:  2001-09-07       Impact factor: 4.124

7.  Phosphoryl transfer and calcium ion occlusion in the calcium pump.

Authors:  Thomas Lykke-Møller Sørensen; Jesper Vuust Møller; Poul Nissen
Journal:  Science       Date:  2004-06-11       Impact factor: 47.728

8.  Deletions of any single residues in Glu40-Ser48 loop connecting a domain and the first transmembrane helix of sarcoplasmic reticulum Ca(2+)-ATPase result in almost complete inhibition of conformational transition and hydrolysis of phosphoenzyme intermediate.

Authors:  Takashi Daiho; Kazuo Yamasaki; Guoli Wang; Stefania Danko; Hajime Iizuka; Hiroshi Suzuki
Journal:  J Biol Chem       Date:  2003-07-11       Impact factor: 5.157

9.  Val200 residue in Lys189-Lys205 outermost loop on the A domain of sarcoplasmic reticulum Ca2+-ATPase is critical for rapid processing of phosphoenzyme intermediate after loss of ADP sensitivity.

Authors:  Sanae Kato; Mika Kamidochi; Takashi Daiho; Kazuo Yamasaki; Wang Gouli; Hiroshi Suzuki
Journal:  J Biol Chem       Date:  2002-12-19       Impact factor: 5.157

10.  Distinct natures of beryllium fluoride-bound, aluminum fluoride-bound, and magnesium fluoride-bound stable analogues of an ADP-insensitive phosphoenzyme intermediate of sarcoplasmic reticulum Ca2+-ATPase: changes in catalytic and transport sites during phosphoenzyme hydrolysis.

Authors:  Stefania Danko; Kazuo Yamasaki; Takashi Daiho; Hiroshi Suzuki
Journal:  J Biol Chem       Date:  2004-01-30       Impact factor: 5.157

View more
  3 in total

1.  Phosphorylation in the catalytic cleft stabilizes and attracts domains of a phosphohexomutase.

Authors:  Jia Xu; Yingying Lee; Lesa J Beamer; Steven R Van Doren
Journal:  Biophys J       Date:  2015-01-20       Impact factor: 4.033

2.  Nanodisc-based kinetic assays reveal distinct effects of phospholipid headgroups on the phosphoenzyme transition of sarcoplasmic reticulum Ca2+-ATPase.

Authors:  Kazuo Yamasaki; Takashi Daiho; Stefania Danko; Satoshi Yasuda; Hiroshi Suzuki
Journal:  J Biol Chem       Date:  2017-10-15       Impact factor: 5.157

3.  Electrostatic interactions between single arginine and phospholipids modulate physiological properties of sarcoplasmic reticulum Ca2+-ATPase.

Authors:  Kazuo Yamasaki; Takashi Daiho; Satoshi Yasuda; Stefania Danko; Jun-Ichi Kawabe; Hiroshi Suzuki
Journal:  Sci Rep       Date:  2022-07-16       Impact factor: 4.996

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.