Literature DB >> 23733949

Structure of the archaeal head-tailed virus HSTV-1 completes the HK97 fold story.

Maija K Pietilä1, Pasi Laurinmäki, Daniel A Russell, Ching-Chung Ko, Deborah Jacobs-Sera, Roger W Hendrix, Dennis H Bamford, Sarah J Butcher.   

Abstract

It has been proposed that viruses can be divided into a small number of structure-based viral lineages. One of these lineages is exemplified by bacterial virus Hong Kong 97 (HK97), which represents the head-tailed dsDNA bacteriophages. Seemingly similar viruses also infect archaea. Here we demonstrate using genomic analysis, electron cryomicroscopy, and image reconstruction that the major coat protein fold of newly isolated archaeal Haloarcula sinaiiensis tailed virus 1 has the canonical coat protein fold of HK97. Although it has been anticipated previously, this is physical evidence that bacterial and archaeal head-tailed viruses share a common architectural principle. The HK97-like fold has previously been recognized also in herpesviruses, and this study expands the HK97-like lineage to viruses from all three domains of life. This is only the second established lineage to include archaeal, bacterial, and eukaryotic viruses. Thus, our findings support the hypothesis that the last common universal ancestor of cellular organisms was infected by a number of different viruses.

Entities:  

Keywords:  archaeal virus; major capsid protein fold; virus evolution

Mesh:

Substances:

Year:  2013        PMID: 23733949      PMCID: PMC3696780          DOI: 10.1073/pnas.1303047110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  59 in total

1.  The Prohead-I structure of bacteriophage HK97: implications for scaffold-mediated control of particle assembly and maturation.

Authors:  Rick K Huang; Reza Khayat; Kelly K Lee; Ilya Gertsman; Robert L Duda; Roger W Hendrix; John E Johnson
Journal:  J Mol Biol       Date:  2011-01-27       Impact factor: 5.469

2.  Order to the viral universe.

Authors:  Mart Krupovič; Dennis H Bamford
Journal:  J Virol       Date:  2010-10-06       Impact factor: 5.103

3.  Fossil record of an archaeal HK97-like provirus.

Authors:  Joshua Heinemann; Walid S Maaty; George H Gauss; Narahari Akkaladevi; Susan K Brumfield; Vamseedhar Rayaprolu; Mark J Young; C Martin Lawrence; Brian Bothner
Journal:  Virology       Date:  2011-07-20       Impact factor: 3.616

Review 4.  The archeoviruses.

Authors:  Mery Pina; Ariane Bize; Patrick Forterre; David Prangishvili
Journal:  FEMS Microbiol Rev       Date:  2011-06-06       Impact factor: 16.408

Review 5.  Bacteriophage HK97 capsid assembly and maturation.

Authors:  Roger W Hendrix; John E Johnson
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

Review 6.  Genomics of bacterial and archaeal viruses: dynamics within the prokaryotic virosphere.

Authors:  Mart Krupovic; David Prangishvili; Roger W Hendrix; Dennis H Bamford
Journal:  Microbiol Mol Biol Rev       Date:  2011-12       Impact factor: 11.056

7.  A thaumarchaeal provirus testifies for an ancient association of tailed viruses with archaea.

Authors:  Mart Krupovic; Anja Spang; Simonetta Gribaldo; Patrick Forterre; Christa Schleper
Journal:  Biochem Soc Trans       Date:  2011-01       Impact factor: 5.407

8.  Interaction of alphaVbeta3 and alphaVbeta6 integrins with human parechovirus 1.

Authors:  Jani Seitsonen; Petri Susi; Outi Heikkilä; Robert S Sinkovits; Pasi Laurinmäki; Timo Hyypiä; Sarah J Butcher
Journal:  J Virol       Date:  2010-06-16       Impact factor: 5.103

9.  An ssDNA virus infecting archaea: a new lineage of viruses with a membrane envelope.

Authors:  Maija K Pietilä; Elina Roine; Lars Paulin; Nisse Kalkkinen; Dennis H Bamford
Journal:  Mol Microbiol       Date:  2009-03-04       Impact factor: 3.501

10.  Comparative analysis of the mosaic genomes of tailed archaeal viruses and proviruses suggests common themes for virion architecture and assembly with tailed viruses of bacteria.

Authors:  Mart Krupovic; Patrick Forterre; Dennis H Bamford
Journal:  J Mol Biol       Date:  2010-01-25       Impact factor: 5.469

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  43 in total

1.  Illuminating structural proteins in viral "dark matter" with metaproteomics.

Authors:  Jennifer R Brum; J Cesar Ignacio-Espinoza; Eun-Hae Kim; Gareth Trubl; Robert M Jones; Simon Roux; Nathan C VerBerkmoes; Virginia I Rich; Matthew B Sullivan
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-16       Impact factor: 11.205

2.  Molecular fossils probe life's origins. Research into molecular fossils and modern viruses is shedding light on the evolution of archaea, prokaryotes and eukaryotes.

Authors:  Philip Hunter
Journal:  EMBO Rep       Date:  2013-10-15       Impact factor: 8.807

3.  Capsid expansion mechanism of bacteriophage T7 revealed by multistate atomic models derived from cryo-EM reconstructions.

Authors:  Fei Guo; Zheng Liu; Ping-An Fang; Qinfen Zhang; Elena T Wright; Weimin Wu; Ci Zhang; Frank Vago; Yue Ren; Joanita Jakana; Wah Chiu; Philip Serwer; Wen Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-13       Impact factor: 11.205

4.  Conservation and Divergence of the I-Domain Inserted into the Ubiquitous HK97 Coat Protein Fold in P22-Like Bacteriophages.

Authors:  Therese N Tripler; Anne R Kaplan; Andrei T Alexandrescu; Carolyn M Teschke
Journal:  J Virol       Date:  2019-04-17       Impact factor: 5.103

5.  A Novel Type of Polyhedral Viruses Infecting Hyperthermophilic Archaea.

Authors:  Ying Liu; Sonoko Ishino; Yoshizumi Ishino; Gérard Pehau-Arnaudet; Mart Krupovic; David Prangishvili
Journal:  J Virol       Date:  2017-06-09       Impact factor: 5.103

Review 6.  Viruses of archaea: Structural, functional, environmental and evolutionary genomics.

Authors:  Mart Krupovic; Virginija Cvirkaite-Krupovic; Jaime Iranzo; David Prangishvili; Eugene V Koonin
Journal:  Virus Res       Date:  2017-11-22       Impact factor: 3.303

Review 7.  Virus world as an evolutionary network of viruses and capsidless selfish elements.

Authors:  Eugene V Koonin; Valerian V Dolja
Journal:  Microbiol Mol Biol Rev       Date:  2014-06       Impact factor: 11.056

8.  Cryo-EM near-atomic structure of a dsRNA fungal virus shows ancient structural motifs preserved in the dsRNA viral lineage.

Authors:  Daniel Luque; Josué Gómez-Blanco; Damiá Garriga; Axel F Brilot; José M González; Wendy M Havens; José L Carrascosa; Benes L Trus; Nuria Verdaguer; Said A Ghabrial; José R Castón
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-12       Impact factor: 11.205

9.  Transient contacts on the exterior of the HK97 procapsid that are essential for capsid assembly.

Authors:  Dan-ju Tso; Roger W Hendrix; Robert L Duda
Journal:  J Mol Biol       Date:  2014-03-20       Impact factor: 5.469

10.  Correct Assembly of the Bacteriophage T5 Procapsid Requires Both the Maturation Protease and the Portal Complex.

Authors:  Alexis Huet; Robert L Duda; Roger W Hendrix; Pascale Boulanger; James F Conway
Journal:  J Mol Biol       Date:  2015-11-23       Impact factor: 5.469

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