Literature DB >> 23733402

Fundamental interactions in RNA: Questions answered and remaining.

Douglas H Turner1.   

Abstract

Interpreting the tsunami of sequence information for RNA would be facilitated by an understanding of all the physical principles determining RNA structure. In principle, a complete understanding would make it computationally possible to find RNA sequences that fold for function and to predict their three-dimensional structure. It would, thus, also facilitate discovery of new principles relating structure to function. This review covers some of the progress in understanding RNA over roughly the preceding 40 years and suggests progress still to be made.
Copyright © 2013 Wiley Periodicals, Inc.

Keywords:  RNA; hydrogen bonding; molecular dynamics; stacking; thermodynamics

Mesh:

Substances:

Year:  2013        PMID: 23733402     DOI: 10.1002/bip.22294

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  5 in total

1.  Mechanistic insights into temperature-dependent regulation of the simple cyanobacterial hsp17 RNA thermometer at base-pair resolution.

Authors:  Dominic Wagner; Jörg Rinnenthal; Franz Narberhaus; Harald Schwalbe
Journal:  Nucleic Acids Res       Date:  2015-05-04       Impact factor: 16.971

2.  Nuclear Magnetic Resonance Structure of an 8 × 8 Nucleotide RNA Internal Loop Flanked on Each Side by Three Watson-Crick Pairs and Comparison to Three-Dimensional Predictions.

Authors:  Andrew D Kauffmann; Scott D Kennedy; Jianbo Zhao; Douglas H Turner
Journal:  Biochemistry       Date:  2017-07-12       Impact factor: 3.162

3.  Surprising Sequence Effects on GU Closure of Symmetric 2 × 2 Nucleotide RNA Internal Loops.

Authors:  Kyle D Berger; Scott D Kennedy; Susan J Schroeder; Brent M Znosko; Hongying Sun; David H Mathews; Douglas H Turner
Journal:  Biochemistry       Date:  2018-03-23       Impact factor: 3.162

4.  Nearest neighbor rules for RNA helix folding thermodynamics: improved end effects.

Authors:  Jeffrey Zuber; Susan J Schroeder; Hongying Sun; Douglas H Turner; David H Mathews
Journal:  Nucleic Acids Res       Date:  2022-05-20       Impact factor: 19.160

5.  Stacking Free Energies of All DNA and RNA Nucleoside Pairs and Dinucleoside-Monophosphates Computed Using Recently Revised AMBER Parameters and Compared with Experiment.

Authors:  Reid F Brown; Casey T Andrews; Adrian H Elcock
Journal:  J Chem Theory Comput       Date:  2015-04-07       Impact factor: 6.006

  5 in total

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