Literature DB >> 23730005

Biological and Molecular Characterization of Cucumber mosaic virus Isolate Causing Shoestring Disease of Tomato in India which has Closer Affinity to European or East Asian Isolates of CMV.

D Pratap1, S Kumar, S K Snehi, S K Raj.   

Abstract

An isolate of Cucumber mosaic virus (CMV) retrieved from tomato in India was characterized based on its transmission by sap inoculations, Western blot immuno-assay and sequence analysis of RNA3 and 2b genome. The RNA3 genome was of 2,220 nucleotides (nt) which contained two ORFs: movement protein of 852 nt translating 283 amino acids and coat protein of 657 nt translating 218 amino acids. The complete sequence of RNA3 geneome (Acc. EF153734) shared highest 98-99% identities with P1-1, Tfn, and Nt9 strains of CMV infecting tomato reported from abroad. The 333 nucleotides long RNA2b gene (Acc. EF710773) also showed highest 98% identities with P1-1 and 97% with Tfn and NT9 strains of CMV but only 83-84% identities with Indian strains of CMV. Therefore, the isolate under study was identified as a new isolate of CMV of subgroup IB based on highest sequence similarities and closer affinity to European or East Asian isolates of CMV.

Entities:  

Keywords:  Cucumber mosaic virus; Distinct isolate; Molecular characterization; Tomato

Year:  2012        PMID： 23730005      PMCID： PMC3550809          DOI： 10.1007/s13337-012-0059-2

Source DB:  PubMed          Journal:  Indian J Virol        ISSN： 0970-2822


  15 in total

1.  DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment.

Authors:  B Morgenstern
Journal:  Bioinformatics       Date:  1999-03       Impact factor: 6.937

2.  Characterization, genetic diversity, and evolutionary link of Cucumber mosaic virus strain New Delhi from India.

Authors:  Vikas Koundal; Qazi Mohd Rizwanul Haq; Shelly Praveen
Journal:  Biochem Genet       Date:  2010-10-27       Impact factor: 1.890

3.  The structure of cucumber mosaic virus and comparison to cowpea chlorotic mottle virus.

Authors:  T J Smith; E Chase; T Schmidt; K L Perry
Journal:  J Virol       Date:  2000-08       Impact factor: 5.103

4.  The complete sequence of a cucumber mosaic virus from Ixora that is deficient in the replication of satellite RNAs.

Authors:  P McGarvey; M Tousignant; L Geletka; F Cellini; J M Kaper
Journal:  J Gen Virol       Date:  1995-09       Impact factor: 3.891

5.  Rearrangements in the 5' nontranslated region and phylogenetic analyses of cucumber mosaic virus RNA 3 indicate radial evolution of three subgroups.

Authors:  M J Roossinck; L Zhang; K H Hellwald
Journal:  J Virol       Date:  1999-08       Impact factor: 5.103

6.  Cucumber mosaic virus mutants with altered physical properties and defective in aphid vector transmission.

Authors:  J C Ng; S Liu; K L Perry
Journal:  Virology       Date:  2000-10-25       Impact factor: 3.616

7.  Amino acid changes in the coat protein of cucumber mosaic virus differentially affect transmission by the aphids Myzus persicae and Aphis gossypii.

Authors:  K L Perry; L Zhang; P Palukaitis
Journal:  Virology       Date:  1998-03-01       Impact factor: 3.616

8.  Molecular characterization of a strain of cucumber mosaic virus based on coat protein and movement protein genes.

Authors:  A Srivastava; G Chandra; S K Raj
Journal:  Acta Virol       Date:  2004       Impact factor: 1.162

9.  Mutational analysis of cis-acting sequences and gene function in RNA3 of cucumber mosaic virus.

Authors:  F Boccard; D Baulcombe
Journal:  Virology       Date:  1993-04       Impact factor: 3.616

10.  Biological and Molecular Characterization of Two Distinct Tomato Strains of Cucumber mosaic virus Based on Complete RNA-3 Genome and Subgroup Specific Diagnosis.

Authors:  A Swapna Geetanjali; Rakesh Kumar; P S Srivastava; Bikash Mandal
Journal:  Indian J Virol       Date:  2011-09-14
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  2 in total

1.  Characterization of cucumber mosaic virus infecting coleus (Plectranthus barbatus) in Karnataka.

Authors:  B S Pavithra; Kedarnath Govin; H M Renuka; M Krishnareddy; S Jalali; D K Samuel; K Himabindu
Journal:  Virusdisease       Date:  2019-07-24

2.  Genome characterization and host range studies of Cucumber mosaic virus belonging to the Subgroup IB infecting chilli in India and screening of chilli genotypes for identification of resistance.

Authors:  K V Ashwathappa; M Krishna Reddy; V Venkataravanappa; K Madhavi Reddy; P Hemachandra Reddy; C N Lakshminarayana Reddy
Journal:  Virusdisease       Date:  2021-08-04
  2 in total

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