Literature DB >> 23729843

A CONTINUUM HARD-SPHERE MODEL OF PROTEIN ADSORPTION.

Craig Finch1, Thomas Clarke, James J Hickman.   

Abstract

Protein adsorption plays a significant role in biological phenomena such as cell-surface interactions and the coagulation of blood. Two-dimensional random sequential adsorption (RSA) models are widely used to model the adsorption of proteins on solid surfaces. Continuum equations have been developed so that the results of RSA simulations can be used to predict the kinetics of adsorption. Recently, Brownian dynamics simulations have become popular for modeling protein adsorption. In this work a continuum model was developed to allow the results from a Brownian dynamics simulation to be used as the boundary condition in a computational fluid dynamics (CFD) simulation. Brownian dynamics simulations were used to model the diffusive transport of hard-sphere particles in a liquid and the adsorption of the particles onto a solid surface. The configuration of the adsorbed particles was analyzed to quantify the chemical potential near the surface, which was found to be a function of the distance from the surface and the fractional surface coverage. The near-surface chemical potential was used to derive a continuum model of adsorption that incorporates the results from the Brownian dynamics simulations. The equations of the continuum model were discretized and coupled to a CFD simulation of diffusive transport to the surface. The kinetics of adsorption predicted by the continuum model closely matched the results from the Brownian dynamics simulation. This new model allows the results from mesoscale simulations to be incorporated into micro- or macro-scale CFD transport simulations of protein adsorption in practical devices.

Entities:  

Keywords:  Brownian dynamics; Protein adsorption; biomaterials; computational fluid dynamics; continuum; random sequential adsorption

Year:  2013        PMID: 23729843      PMCID: PMC3667994          DOI: 10.1016/j.jcp.2012.07.034

Source DB:  PubMed          Journal:  J Comput Phys        ISSN: 0021-9991            Impact factor:   3.553


  11 in total

1.  Kinetics of Diffusion-Controlled Adsorption of Colloid Particles and Proteins.

Authors: 
Journal:  J Colloid Interface Sci       Date:  2000-09-15       Impact factor: 8.128

2.  Fluidics-resolved estimation of protein adsorption kinetics in a biomicrofluidic system.

Authors:  J Jenkins; B Prabhakarpandian; K Lenghaus; J Hickman; S Sundaram
Journal:  Anal Biochem       Date:  2004-08-15       Impact factor: 3.365

3.  Molecular simulation to characterize the adsorption behavior of a fibrinogen gamma-chain fragment.

Authors:  Madhuri Agashe; Vivek Raut; Steven J Stuart; Robert A Latour
Journal:  Langmuir       Date:  2005-02-01       Impact factor: 3.882

4.  Multiscale-linking simulation of irreversible colloidal deposition in the presence of DLVO interactions.

Authors:  Rahul V Magan; Radhakrishna Sureshkumar
Journal:  J Colloid Interface Sci       Date:  2005-12-13       Impact factor: 8.128

5.  Brownian dynamics simulation and experimental study of colloidal particle deposition in a microchannel flow.

Authors:  H N Unni; C Yang
Journal:  J Colloid Interface Sci       Date:  2005-06-17       Impact factor: 8.128

Review 6.  Modern biomaterials: a review - bulk properties and implications of surface modifications.

Authors:  Paul Roach; David Eglin; Kirsty Rohde; Carole C Perry
Journal:  J Mater Sci Mater Med       Date:  2007-04-19       Impact factor: 3.896

Review 7.  Foreign body reaction to biomaterials.

Authors:  James M Anderson; Analiz Rodriguez; David T Chang
Journal:  Semin Immunol       Date:  2007-12-26       Impact factor: 11.130

8.  Protein adsorption on a hydrophobic surface: a molecular dynamics study of lysozyme on graphite.

Authors:  Giuseppina Raffaini; Fabio Ganazzoli
Journal:  Langmuir       Date:  2010-04-20       Impact factor: 3.882

Review 9.  Understanding protein adsorption phenomena at solid surfaces.

Authors:  Michael Rabe; Dorinel Verdes; Stefan Seeger
Journal:  Adv Colloid Interface Sci       Date:  2011-01-12       Impact factor: 12.984

10.  Exploring atomic resolution physiology on a femtosecond to millisecond timescale using molecular dynamics simulations.

Authors:  Ron O Dror; Morten Ø Jensen; David W Borhani; David E Shaw
Journal:  J Gen Physiol       Date:  2010-06       Impact factor: 4.086

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  1 in total

1.  Random sequential adsorption of trimers and hexamers.

Authors:  Michał Cieśla; Jakub Barbasz
Journal:  J Mol Model       Date:  2013-11-06       Impact factor: 1.810

  1 in total

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