Literature DB >> 23729255

Analyzing protein-ligand interactions by dynamic NMR spectroscopy.

Anthony Mittermaier1, Erick Meneses.   

Abstract

Nuclear magnetic resonance (NMR) spectroscopy can provide detailed information on protein-ligand interactions that is inaccessible using other biophysical techniques. This chapter focuses on NMR-based approaches for extracting affinity and rate constants for weakly binding transient protein complexes with lifetimes of less than about a second. Several pulse sequences and analytical techniques are discussed, including line-shape simulations, spin-echo relaxation dispersion methods (CPMG), and magnetization exchange (EXSY) experiments.

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Year:  2013        PMID: 23729255     DOI: 10.1007/978-1-62703-398-5_9

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  8 in total

Review 1.  Global ITC fitting methods in studies of protein allostery.

Authors:  Lee Freiburger; Karine Auclair; Anthony Mittermaier
Journal:  Methods       Date:  2015-01-05       Impact factor: 3.608

2.  Ligand Binding Enhances Millisecond Conformational Exchange in Xylanase B2 from Streptomyces lividans.

Authors:  Donald Gagné; Chitra Narayanan; Nhung Nguyen-Thi; Louise D Roux; David N Bernard; Joseph S Brunzelle; Jean-François Couture; Pratul K Agarwal; Nicolas Doucet
Journal:  Biochemistry       Date:  2016-07-21       Impact factor: 3.162

3.  Network of long-range concerted chemical shift displacements upon ligand binding to human angiogenin.

Authors:  Donald Gagné; Chitra Narayanan; Nicolas Doucet
Journal:  Protein Sci       Date:  2014-12-26       Impact factor: 6.725

4.  Characterizing protein-glycosaminoglycan interactions using solution NMR spectroscopy.

Authors:  Prem Raj B Joseph; Krishna Mohan Poluri; Krishna Mohan Sepuru; Krishna Rajarathnam
Journal:  Methods Mol Biol       Date:  2015

5.  Molecular basis for receptor tyrosine kinase A-loop tyrosine transphosphorylation.

Authors:  Lingfeng Chen; William M Marsiglia; Huaibin Chen; Joseph Katigbak; Hediye Erdjument-Bromage; David J Kemble; Lili Fu; Jinghong Ma; Gongqin Sun; Yingkai Zhang; Guang Liang; Thomas A Neubert; Xiaokun Li; Nathaniel J Traaseth; Moosa Mohammadi
Journal:  Nat Chem Biol       Date:  2020-01-20       Impact factor: 15.040

6.  Ligand-detected relaxation dispersion NMR spectroscopy: dynamics of preQ1-RNA binding.

Authors:  Thomas Moschen; Christoph Hermann Wunderlich; Romana Spitzer; Jasmin Levic; Ronald Micura; Martin Tollinger; Christoph Kreutz
Journal:  Angew Chem Int Ed Engl       Date:  2014-11-17       Impact factor: 15.336

Review 7.  Troubleshooting Guide to Expressing Intrinsically Disordered Proteins for Use in NMR Experiments.

Authors:  Steffen P Graether
Journal:  Front Mol Biosci       Date:  2019-01-18

8.  Measurement of Ligand-Target Residence Times by 1H Relaxation Dispersion NMR Spectroscopy.

Authors:  Thomas Moschen; Sarina Grutsch; Michael A Juen; Christoph H Wunderlich; Christoph Kreutz; Martin Tollinger
Journal:  J Med Chem       Date:  2016-11-29       Impact factor: 7.446

  8 in total

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