| Literature DB >> 23723944 |
Srinivasan Muralidharan1, Perumal Nagapandiselvi, Thothadri Srinivasan, Rengasamy Gopalakrishnan, Devadasan Velmurugan.
Abstract
In the title salt, C6H10N3O2 (+)·C7H7O3S(-), the imidazole ring makes a dihedral angle of 70.93 (12)° with the plane of the toluene ring. In the crystal, the ions are linked via N-H⋯O and weak C-H⋯O hydrogen bonds forming two-dimensional networks lying parallel to (001). These networks are linked via C-H⋯π inter-actions, forming a three-dimensional structure.Entities:
Year: 2013 PMID: 23723944 PMCID: PMC3648324 DOI: 10.1107/S1600536813011161
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H10N3O2+·C7H7O3S− | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 3638 reflections |
| θ = 2.1–28.3° | |
| µ = 0.25 mm−1 | |
| Block, colourless | |
| 0.30 × 0.25 × 0.20 mm |
| Bruker SMART APEXII area-detector diffractometer | 3638 independent reflections |
| Radiation source: fine-focus sealed tube | 3533 reflections with |
| Graphite monochromator | |
| ω and φ scans | θmax = 28.3°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 8400 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.014 | |
| 3638 reflections | Δρmax = 0.22 e Å−3 |
| 212 parameters | Δρmin = −0.29 e Å−3 |
| 0 restraints | Absolute structure: Flack (1983), 1479 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.07 (7) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| C1 | 0.5686 (4) | 0.8856 (3) | 0.08354 (5) | 0.0267 (4) | |
| C2 | 0.3546 (5) | 0.8904 (3) | 0.06249 (6) | 0.0378 (5) | |
| H2 | 0.2447 | 0.9891 | 0.0633 | 0.045* | |
| C3 | 0.3067 (5) | 0.7455 (4) | 0.04012 (6) | 0.0445 (6) | |
| H3 | 0.1645 | 0.7493 | 0.0257 | 0.053* | |
| C4 | 0.4653 (5) | 0.5955 (3) | 0.03871 (6) | 0.0410 (5) | |
| C5 | 0.6786 (5) | 0.5940 (3) | 0.05970 (6) | 0.0413 (5) | |
| H5 | 0.7888 | 0.4956 | 0.0588 | 0.050* | |
| C6 | 0.7307 (4) | 0.7383 (3) | 0.08214 (6) | 0.0352 (5) | |
| H6 | 0.8747 | 0.7355 | 0.0962 | 0.042* | |
| C7 | 0.4046 (8) | 0.4355 (4) | 0.01540 (8) | 0.0698 (9) | |
| H7A | 0.2604 | 0.4640 | 0.0010 | 0.105* | |
| H7B | 0.3667 | 0.3315 | 0.0296 | 0.105* | |
| H7C | 0.5479 | 0.4093 | 0.0007 | 0.105* | |
| C8 | 1.2390 (4) | 0.5424 (3) | 0.13142 (5) | 0.0305 (4) | |
| H8 | 1.3637 | 0.5258 | 0.1145 | 0.037* | |
| C9 | 1.0008 (4) | 0.6656 (3) | 0.17226 (5) | 0.0312 (4) | |
| H9 | 0.9349 | 0.7496 | 0.1880 | 0.037* | |
| C10 | 0.9162 (4) | 0.4935 (2) | 0.16686 (5) | 0.0240 (4) | |
| C11 | 0.7122 (4) | 0.3892 (2) | 0.18479 (5) | 0.0242 (4) | |
| H11A | 0.6039 | 0.3330 | 0.1673 | 0.029* | |
| H11B | 0.6089 | 0.4719 | 0.1985 | 0.029* | |
| C12 | 0.8209 (3) | 0.2411 (2) | 0.20905 (4) | 0.0190 (3) | |
| H12 | 0.9473 | 0.1693 | 0.1963 | 0.023* | |
| C13 | 0.9463 (3) | 0.3308 (2) | 0.24112 (5) | 0.0217 (4) | |
| N1 | 1.0671 (3) | 0.4207 (2) | 0.14111 (4) | 0.0261 (3) | |
| H1 | 1.0525 | 0.3132 | 0.1326 | 0.031* | |
| N2 | 1.2021 (4) | 0.6914 (2) | 0.15002 (5) | 0.0325 (4) | |
| H2A | 1.2904 | 0.7892 | 0.1484 | 0.039* | |
| N3 | 0.6079 (3) | 0.1216 (2) | 0.22022 (4) | 0.0227 (3) | |
| O1 | 0.4968 (4) | 1.2199 (2) | 0.10150 (5) | 0.0513 (5) | |
| O2 | 0.8939 (3) | 1.0777 (2) | 0.11806 (5) | 0.0564 (5) | |
| O3 | 0.5067 (4) | 0.9933 (2) | 0.14701 (4) | 0.0448 (4) | |
| O4 | 1.1834 (3) | 0.3507 (2) | 0.23929 (4) | 0.0344 (4) | |
| O5 | 0.8051 (3) | 0.3822 (2) | 0.26480 (4) | 0.0340 (3) | |
| S1 | 0.62131 (10) | 1.05973 (6) | 0.114496 (13) | 0.02896 (12) | |
| H3D | 0.534 (4) | 0.064 (3) | 0.2015 (6) | 0.027 (5)* | |
| H3B | 0.673 (5) | 0.024 (4) | 0.2341 (7) | 0.037 (7)* | |
| H3C | 0.487 (5) | 0.173 (4) | 0.2300 (6) | 0.036 (7)* |
| C1 | 0.0301 (10) | 0.0217 (8) | 0.0283 (8) | −0.0061 (8) | 0.0041 (8) | −0.0026 (7) |
| C2 | 0.0372 (12) | 0.0342 (10) | 0.0421 (11) | 0.0033 (9) | −0.0061 (10) | −0.0038 (9) |
| C3 | 0.0450 (14) | 0.0514 (14) | 0.0372 (11) | −0.0084 (12) | −0.0092 (10) | −0.0068 (10) |
| C4 | 0.0515 (14) | 0.0352 (12) | 0.0363 (11) | −0.0120 (10) | 0.0078 (10) | −0.0102 (9) |
| C5 | 0.0457 (13) | 0.0272 (10) | 0.0509 (13) | 0.0019 (9) | 0.0099 (11) | −0.0077 (9) |
| C6 | 0.0312 (11) | 0.0306 (10) | 0.0437 (11) | −0.0002 (9) | −0.0012 (9) | −0.0043 (9) |
| C7 | 0.095 (3) | 0.0578 (17) | 0.0570 (16) | −0.0227 (19) | 0.0094 (17) | −0.0293 (14) |
| C8 | 0.0280 (10) | 0.0273 (9) | 0.0361 (10) | −0.0045 (9) | 0.0013 (8) | 0.0055 (8) |
| C9 | 0.0449 (12) | 0.0186 (8) | 0.0302 (10) | −0.0051 (8) | −0.0014 (9) | −0.0016 (7) |
| C10 | 0.0275 (9) | 0.0202 (8) | 0.0244 (8) | −0.0024 (7) | −0.0016 (8) | 0.0021 (6) |
| C11 | 0.0245 (9) | 0.0210 (8) | 0.0273 (8) | −0.0011 (7) | −0.0025 (7) | 0.0032 (7) |
| C12 | 0.0161 (8) | 0.0176 (7) | 0.0234 (8) | −0.0030 (6) | 0.0006 (6) | 0.0000 (6) |
| C13 | 0.0214 (9) | 0.0139 (7) | 0.0300 (9) | 0.0024 (6) | −0.0055 (7) | 0.0004 (6) |
| N1 | 0.0307 (9) | 0.0176 (7) | 0.0301 (7) | −0.0037 (6) | 0.0013 (6) | 0.0002 (6) |
| N2 | 0.0392 (10) | 0.0221 (8) | 0.0362 (9) | −0.0119 (7) | −0.0043 (8) | 0.0049 (7) |
| N3 | 0.0188 (7) | 0.0202 (7) | 0.0290 (8) | −0.0031 (7) | −0.0001 (7) | 0.0008 (6) |
| O1 | 0.0761 (14) | 0.0229 (7) | 0.0550 (10) | 0.0084 (8) | −0.0015 (10) | −0.0024 (7) |
| O2 | 0.0336 (9) | 0.0439 (9) | 0.0917 (14) | −0.0153 (8) | 0.0063 (9) | −0.0324 (10) |
| O3 | 0.0614 (11) | 0.0379 (8) | 0.0350 (8) | −0.0244 (8) | 0.0022 (8) | −0.0085 (6) |
| O4 | 0.0192 (7) | 0.0312 (7) | 0.0529 (9) | −0.0031 (6) | −0.0052 (6) | −0.0140 (6) |
| O5 | 0.0322 (8) | 0.0386 (8) | 0.0312 (7) | 0.0045 (6) | −0.0018 (6) | −0.0095 (6) |
| S1 | 0.0314 (3) | 0.0191 (2) | 0.0364 (2) | −0.00777 (18) | 0.0038 (2) | −0.00459 (18) |
| C1—C6 | 1.382 (3) | C9—H9 | 0.9300 |
| C1—C2 | 1.386 (3) | C10—N1 | 1.374 (2) |
| C1—S1 | 1.7671 (19) | C10—C11 | 1.488 (3) |
| C2—C3 | 1.391 (3) | C11—C12 | 1.542 (2) |
| C2—H2 | 0.9300 | C11—H11A | 0.9700 |
| C3—C4 | 1.387 (4) | C11—H11B | 0.9700 |
| C3—H3 | 0.9300 | C12—N3 | 1.490 (2) |
| C4—C5 | 1.381 (4) | C12—C13 | 1.541 (2) |
| C4—C7 | 1.512 (3) | C12—H12 | 0.9800 |
| C5—C6 | 1.393 (3) | C13—O5 | 1.231 (2) |
| C5—H5 | 0.9300 | C13—O4 | 1.260 (2) |
| C6—H6 | 0.9300 | N1—H1 | 0.8600 |
| C7—H7A | 0.9600 | N2—H2A | 0.8600 |
| C7—H7B | 0.9600 | N3—H3D | 0.92 (2) |
| C7—H7C | 0.9600 | N3—H3B | 0.96 (3) |
| C8—N2 | 1.322 (3) | N3—H3C | 0.83 (3) |
| C8—N1 | 1.327 (2) | O1—S1 | 1.4391 (17) |
| C8—H8 | 0.9300 | O2—S1 | 1.4490 (18) |
| C9—C10 | 1.360 (3) | O3—S1 | 1.4652 (17) |
| C9—N2 | 1.372 (3) | ||
| C6—C1—C2 | 120.04 (18) | C10—C11—C12 | 111.95 (15) |
| C6—C1—S1 | 119.94 (16) | C10—C11—H11A | 109.2 |
| C2—C1—S1 | 119.85 (16) | C12—C11—H11A | 109.2 |
| C1—C2—C3 | 119.0 (2) | C10—C11—H11B | 109.2 |
| C1—C2—H2 | 120.5 | C12—C11—H11B | 109.2 |
| C3—C2—H2 | 120.5 | H11A—C11—H11B | 107.9 |
| C4—C3—C2 | 121.8 (2) | N3—C12—C13 | 110.43 (14) |
| C4—C3—H3 | 119.1 | N3—C12—C11 | 108.10 (14) |
| C2—C3—H3 | 119.1 | C13—C12—C11 | 109.47 (14) |
| C5—C4—C3 | 118.3 (2) | N3—C12—H12 | 109.6 |
| C5—C4—C7 | 120.5 (2) | C13—C12—H12 | 109.6 |
| C3—C4—C7 | 121.1 (3) | C11—C12—H12 | 109.6 |
| C4—C5—C6 | 120.8 (2) | O5—C13—O4 | 127.17 (18) |
| C4—C5—H5 | 119.6 | O5—C13—C12 | 117.22 (16) |
| C6—C5—H5 | 119.6 | O4—C13—C12 | 115.52 (17) |
| C1—C6—C5 | 120.1 (2) | C8—N1—C10 | 109.33 (16) |
| C1—C6—H6 | 119.9 | C8—N1—H1 | 125.3 |
| C5—C6—H6 | 119.9 | C10—N1—H1 | 125.3 |
| C4—C7—H7A | 109.5 | C8—N2—C9 | 109.36 (17) |
| C4—C7—H7B | 109.5 | C8—N2—H2A | 125.3 |
| H7A—C7—H7B | 109.5 | C9—N2—H2A | 125.3 |
| C4—C7—H7C | 109.5 | C12—N3—H3D | 111.8 (14) |
| H7A—C7—H7C | 109.5 | C12—N3—H3B | 109.6 (15) |
| H7B—C7—H7C | 109.5 | H3D—N3—H3B | 104 (2) |
| N2—C8—N1 | 108.10 (18) | C12—N3—H3C | 115.8 (18) |
| N2—C8—H8 | 125.9 | H3D—N3—H3C | 104 (2) |
| N1—C8—H8 | 125.9 | H3B—N3—H3C | 112 (2) |
| C10—C9—N2 | 106.77 (19) | O1—S1—O2 | 114.19 (12) |
| C10—C9—H9 | 126.6 | O1—S1—O3 | 112.24 (12) |
| N2—C9—H9 | 126.6 | O2—S1—O3 | 111.07 (12) |
| C9—C10—N1 | 106.42 (17) | O1—S1—C1 | 107.04 (10) |
| C9—C10—C11 | 130.43 (19) | O2—S1—C1 | 106.56 (10) |
| N1—C10—C11 | 123.10 (16) | O3—S1—C1 | 105.06 (9) |
| C6—C1—C2—C3 | 0.0 (3) | N3—C12—C13—O5 | −39.4 (2) |
| S1—C1—C2—C3 | −175.30 (18) | C11—C12—C13—O5 | 79.5 (2) |
| C1—C2—C3—C4 | 0.9 (4) | N3—C12—C13—O4 | 143.72 (16) |
| C2—C3—C4—C5 | −1.4 (4) | C11—C12—C13—O4 | −97.38 (19) |
| C2—C3—C4—C7 | 177.3 (2) | N2—C8—N1—C10 | −0.4 (2) |
| C3—C4—C5—C6 | 1.0 (4) | C9—C10—N1—C8 | 0.7 (2) |
| C7—C4—C5—C6 | −177.7 (2) | C11—C10—N1—C8 | −176.84 (17) |
| C2—C1—C6—C5 | −0.3 (3) | N1—C8—N2—C9 | −0.1 (2) |
| S1—C1—C6—C5 | 174.95 (17) | C10—C9—N2—C8 | 0.6 (2) |
| C4—C5—C6—C1 | −0.2 (3) | C6—C1—S1—O1 | 157.65 (17) |
| N2—C9—C10—N1 | −0.8 (2) | C2—C1—S1—O1 | −27.0 (2) |
| N2—C9—C10—C11 | 176.54 (19) | C6—C1—S1—O2 | 35.1 (2) |
| C9—C10—C11—C12 | −106.9 (2) | C2—C1—S1—O2 | −149.61 (18) |
| N1—C10—C11—C12 | 70.1 (2) | C6—C1—S1—O3 | −82.85 (19) |
| C10—C11—C12—N3 | −169.02 (15) | C2—C1—S1—O3 | 92.46 (19) |
| C10—C11—C12—C13 | 70.64 (19) |
| H··· | ||||
| N1—H1···O2i | 0.86 | 2.00 | 2.828 (2) | 160 |
| N2—H2 | 0.86 | 1.89 | 2.746 (2) | 175 |
| N3—H3 | 0.96 (3) | 1.80 (3) | 2.755 (2) | 176 (2) |
| N3—H3 | 0.83 (3) | 2.10 (3) | 2.896 (2) | 161 (2) |
| N3—H3 | 0.92 (2) | 2.15 (2) | 3.000 (2) | 153.4 (19) |
| C8—H8···O1v | 0.93 | 2.41 | 2.967 (3) | 118 |
| C9—H9···O5vi | 0.93 | 2.47 | 3.062 (3) | 122 |
| C6—H6··· | 0.93 | 2.73 | 3.515 (2) | 143 |
| C8—H8··· | 0.93 | 2.71 | 3.394 (2) | 131 |
Hydrogen-bond geometry (Å, °)
Cg1 and Cg2 are the centroids the C1–C6 and N1/N2/C8–C10 rings, respectively.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1⋯O2i | 0.86 | 2.00 | 2.828 (2) | 160 |
| N2—H2 | 0.86 | 1.89 | 2.746 (2) | 175 |
| N3—H3 | 0.96 (3) | 1.80 (3) | 2.755 (2) | 176 (2) |
| N3—H3 | 0.83 (3) | 2.10 (3) | 2.896 (2) | 161 (2) |
| N3—H3 | 0.92 (2) | 2.15 (2) | 3.000 (2) | 153.4 (19) |
| C8—H8⋯O1v | 0.93 | 2.41 | 2.967 (3) | 118 |
| C9—H9⋯O5vi | 0.93 | 2.47 | 3.062 (3) | 122 |
| C6—H6⋯ | 0.93 | 2.73 | 3.515 (2) | 143 |
| C8—H8⋯ | 0.93 | 2.71 | 3.394 (2) | 131 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .