Literature DB >> 23723929

Diethyl 4-(2-meth-oxy-phen-yl)-2,6-di-methyl-1,4-di-hydro-pyridine-3,5-di-carboxyl-ate.

Ke Wang1, Yifeng Wang, Minjie Yao, Danqian Xu.   

Abstract

In the title compound, C20H25NO5, the di-hydro-pyridine ring adopts a flattened boat conformation. The meth-oxy-phenyl ring is almost perpendicular to the mean plane of the pyridine ring [dihedral angle = 88.42 (3)°]. The two carbonyl units adopt a synperiplanar conformation with respect to the double bonds in the di-hydro-pyridine ring. In the crystal, mol-ecules are connected by N-H⋯O hydrogen bonds into R 4 (4)(24) tetra-meric rings. A region of disordered electron density, located at the center of four adjacent mol-ecules, was treated with the SQUEEZE routine in PLATON [Spek (2009 ▶). Acta Cryst. D65, 148-155]. It is probably the result of traces of the solvent of crystallization and was not taken into account during the structure refinement.

Entities:  

Year:  2013        PMID: 23723929      PMCID: PMC3648309          DOI: 10.1107/S1600536813009951

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to 1,4-di­hydro­pyridine compounds, see: Franke et al. (2008 ▶); Takemoto et al. (2010 ▶). For related structures, see: Fun et al. (2012 ▶); Kapoor et al. (2011 ▶).

Experimental

Crystal data

C20H25NO5 M = 359.41 Tetragonal, a = 22.4689 (7) Å c = 8.2443 (3) Å V = 4162.1 (2) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.47 × 0.31 × 0.22 mm

Data collection

Rigaku R-AXIS RAPID/ZJUG diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.952, T max = 0.982 60800 measured reflections 4755 independent reflections 3128 reflections with I > 2σ(I) R int = 0.078

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.167 S = 1.00 4755 reflections 241 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.20 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 2006 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2102). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813009951/pk2475sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813009951/pk2475Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813009951/pk2475Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H25NO5Dx = 1.147 Mg m3
Mr = 359.41Mo Kα radiation, λ = 0.71073 Å
Tetragonal, P421cCell parameters from 36625 reflections
Hall symbol: P -4 2nθ = 3.1–27.4°
a = 22.4689 (7) ŵ = 0.08 mm1
c = 8.2443 (3) ÅT = 296 K
V = 4162.1 (2) Å3Block, colorless
Z = 80.47 × 0.31 × 0.22 mm
F(000) = 1536
Rigaku R-AXIS RAPID/ZJUG diffractometer4755 independent reflections
Radiation source: rotating anode3128 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.078
Detector resolution: 10.00 pixels mm-1θmax = 27.5°, θmin = 3.1°
ω scansh = −20→20
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = 0→29
Tmin = 0.952, Tmax = 0.982l = 0→10
60800 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.167H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0855P)2 + 0.9222P] where P = (Fo2 + 2Fc2)/3
4755 reflections(Δ/σ)max = 0.008
241 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.48258 (11)0.26476 (11)0.3185 (3)0.0488 (6)
H10.51830.26580.38660.059*
C20.43244 (11)0.29128 (12)0.4187 (3)0.0487 (6)
C30.39385 (13)0.33091 (13)0.3545 (4)0.0559 (7)
C40.45445 (13)0.34162 (12)0.1122 (3)0.0524 (7)
C50.49582 (12)0.30287 (11)0.1698 (3)0.0482 (6)
C60.47208 (12)0.19936 (12)0.2738 (3)0.0485 (6)
C70.51178 (14)0.15615 (13)0.3240 (4)0.0623 (8)
H70.54420.16730.38720.075*
C80.50466 (18)0.09635 (15)0.2830 (5)0.0797 (10)
H80.53160.06810.32070.096*
C90.45815 (16)0.07942 (15)0.1875 (5)0.0802 (10)
H90.45400.03970.15750.096*
C100.41693 (16)0.12109 (14)0.1349 (4)0.0705 (8)
H100.38510.10950.07000.085*
C110.42368 (13)0.18025 (12)0.1801 (4)0.0546 (7)
C120.33177 (15)0.20776 (18)0.0506 (5)0.0826 (11)
H12A0.34150.1878−0.04900.124*
H12B0.30880.24280.02730.124*
H12C0.30900.18150.11840.124*
C130.42649 (12)0.27102 (13)0.5869 (3)0.0515 (6)
C140.47214 (15)0.21103 (14)0.7908 (3)0.0628 (8)
H14A0.43870.18400.80190.075*
H14B0.46850.24200.87220.075*
C150.52918 (17)0.17829 (16)0.8121 (5)0.0817 (10)
H15A0.53050.14530.73830.123*
H15B0.53190.16390.92150.123*
H15C0.56190.20460.79040.123*
C160.34108 (15)0.35877 (18)0.4346 (5)0.0817 (10)
H16A0.31390.32820.46830.123*
H16B0.32150.38490.35940.123*
H16C0.35390.38110.52750.123*
C170.45761 (16)0.37777 (15)−0.0409 (4)0.0698 (9)
H17A0.47390.4163−0.01710.105*
H17B0.41840.3823−0.08530.105*
H17C0.48260.3579−0.11820.105*
C180.55359 (12)0.29701 (12)0.0932 (4)0.0525 (7)
C190.65098 (15)0.2576 (2)0.1250 (5)0.0846 (11)
H19A0.67220.29490.13830.102*
H19B0.65120.24710.01080.102*
C200.6793 (2)0.2111 (3)0.2197 (7)0.140 (2)
H20A0.66770.21490.33130.210*
H20B0.72180.21480.21100.210*
H20C0.66720.17290.17940.210*
N10.40319 (10)0.35131 (11)0.1988 (3)0.0599 (6)
H1A0.37520.37130.15320.072*
O10.38505 (9)0.22427 (9)0.1319 (3)0.0636 (6)
O20.47297 (9)0.23683 (10)0.6302 (2)0.0633 (6)
O30.38594 (9)0.28131 (11)0.6811 (3)0.0712 (6)
O40.59075 (8)0.26366 (10)0.1817 (3)0.0654 (6)
O50.56955 (10)0.31897 (11)−0.0357 (3)0.0738 (6)
U11U22U33U12U13U23
C10.0473 (14)0.0528 (14)0.0462 (13)0.0037 (11)0.0026 (12)0.0049 (12)
C20.0461 (14)0.0570 (15)0.0429 (13)−0.0004 (11)0.0039 (11)−0.0004 (12)
C30.0520 (15)0.0602 (17)0.0554 (16)0.0044 (13)0.0034 (13)0.0039 (13)
C40.0585 (16)0.0496 (14)0.0490 (15)−0.0008 (12)−0.0007 (13)0.0047 (12)
C50.0511 (14)0.0492 (14)0.0442 (14)−0.0067 (12)0.0027 (12)0.0024 (11)
C60.0525 (14)0.0499 (14)0.0432 (13)0.0026 (11)0.0073 (12)0.0077 (11)
C70.0605 (17)0.0605 (17)0.0659 (18)0.0080 (14)0.0056 (15)0.0099 (15)
C80.086 (2)0.0608 (19)0.092 (3)0.0170 (17)0.011 (2)0.0100 (18)
C90.089 (2)0.0545 (18)0.097 (3)0.0006 (17)0.012 (2)0.0019 (19)
C100.081 (2)0.0586 (18)0.072 (2)−0.0094 (16)0.0081 (17)−0.0001 (16)
C110.0564 (15)0.0543 (15)0.0530 (15)−0.0003 (13)0.0088 (13)0.0092 (13)
C120.063 (2)0.088 (2)0.096 (3)−0.0112 (18)−0.0207 (18)0.013 (2)
C130.0530 (15)0.0578 (15)0.0439 (14)−0.0028 (13)0.0014 (12)−0.0015 (12)
C140.0764 (19)0.0706 (18)0.0415 (14)−0.0027 (15)0.0005 (14)0.0091 (14)
C150.102 (3)0.080 (2)0.063 (2)0.017 (2)−0.004 (2)0.0156 (18)
C160.0598 (19)0.102 (3)0.084 (2)0.0253 (19)0.0137 (18)0.006 (2)
C170.083 (2)0.0630 (18)0.0630 (19)0.0057 (17)0.0066 (17)0.0187 (16)
C180.0548 (15)0.0510 (14)0.0516 (15)−0.0058 (12)0.0025 (13)0.0010 (13)
C190.0505 (17)0.123 (3)0.080 (2)0.0072 (19)0.0162 (17)−0.003 (2)
C200.088 (3)0.194 (6)0.139 (4)0.073 (3)0.026 (3)0.045 (4)
N10.0559 (14)0.0657 (15)0.0580 (15)0.0110 (11)0.0007 (12)0.0094 (12)
O10.0616 (12)0.0581 (12)0.0711 (13)−0.0028 (9)−0.0114 (10)0.0088 (10)
O20.0647 (12)0.0804 (14)0.0447 (10)0.0107 (11)0.0054 (9)0.0094 (10)
O30.0668 (13)0.0950 (16)0.0517 (12)0.0103 (12)0.0162 (11)0.0039 (11)
O40.0472 (10)0.0853 (14)0.0637 (13)0.0086 (10)0.0097 (10)0.0092 (11)
O50.0707 (14)0.0829 (15)0.0678 (14)−0.0057 (12)0.0180 (11)0.0189 (12)
C1—C21.519 (4)C12—H12C0.9600
C1—C51.525 (4)C13—O31.220 (3)
C1—C61.533 (4)C13—O21.345 (3)
C1—H10.9800C14—O21.446 (3)
C2—C31.351 (4)C14—C151.488 (5)
C2—C131.466 (4)C14—H14A0.9700
C3—N11.379 (4)C14—H14B0.9700
C3—C161.494 (4)C15—H15A0.9600
C4—C51.359 (4)C15—H15B0.9600
C4—N11.373 (4)C15—H15C0.9600
C4—C171.503 (4)C16—H16A0.9600
C5—C181.449 (4)C16—H16B0.9600
C6—C71.382 (4)C16—H16C0.9600
C6—C111.401 (4)C17—H17A0.9600
C7—C81.395 (5)C17—H17B0.9600
C7—H70.9300C17—H17C0.9600
C8—C91.363 (5)C18—O51.225 (3)
C8—H80.9300C18—O41.338 (3)
C9—C101.387 (5)C19—O41.438 (4)
C9—H90.9300C19—C201.451 (6)
C10—C111.389 (4)C19—H19A0.9700
C10—H100.9300C19—H19B0.9700
C11—O11.374 (3)C20—H20A0.9600
C12—O11.422 (4)C20—H20B0.9600
C12—H12A0.9600C20—H20C0.9600
C12—H12B0.9600N1—H1A0.8600
C2—C1—C5111.2 (2)O2—C14—C15107.2 (3)
C2—C1—C6113.1 (2)O2—C14—H14A110.3
C5—C1—C6112.0 (2)C15—C14—H14A110.3
C2—C1—H1106.7O2—C14—H14B110.3
C5—C1—H1106.7C15—C14—H14B110.3
C6—C1—H1106.7H14A—C14—H14B108.5
C3—C2—C13121.1 (2)C14—C15—H15A109.5
C3—C2—C1121.5 (2)C14—C15—H15B109.5
C13—C2—C1117.4 (2)H15A—C15—H15B109.5
C2—C3—N1119.1 (3)C14—C15—H15C109.5
C2—C3—C16127.8 (3)H15A—C15—H15C109.5
N1—C3—C16113.1 (3)H15B—C15—H15C109.5
C5—C4—N1119.6 (2)C3—C16—H16A109.5
C5—C4—C17127.4 (3)C3—C16—H16B109.5
N1—C4—C17113.0 (2)H16A—C16—H16B109.5
C4—C5—C18121.2 (2)C3—C16—H16C109.5
C4—C5—C1120.5 (2)H16A—C16—H16C109.5
C18—C5—C1118.3 (2)H16B—C16—H16C109.5
C7—C6—C11116.8 (3)C4—C17—H17A109.5
C7—C6—C1120.1 (3)C4—C17—H17B109.5
C11—C6—C1123.1 (2)H17A—C17—H17B109.5
C6—C7—C8122.0 (3)C4—C17—H17C109.5
C6—C7—H7119.0H17A—C17—H17C109.5
C8—C7—H7119.0H17B—C17—H17C109.5
C9—C8—C7119.8 (3)O5—C18—O4121.1 (3)
C9—C8—H8120.1O5—C18—C5127.1 (3)
C7—C8—H8120.1O4—C18—C5111.8 (2)
C8—C9—C10120.3 (3)O4—C19—C20107.8 (3)
C8—C9—H9119.9O4—C19—H19A110.1
C10—C9—H9119.9C20—C19—H19A110.1
C9—C10—C11119.3 (3)O4—C19—H19B110.1
C9—C10—H10120.3C20—C19—H19B110.1
C11—C10—H10120.3H19A—C19—H19B108.5
O1—C11—C10122.9 (3)C19—C20—H20A109.5
O1—C11—C6115.4 (2)C19—C20—H20B109.5
C10—C11—C6121.7 (3)H20A—C20—H20B109.5
O1—C12—H12A109.5C19—C20—H20C109.5
O1—C12—H12B109.5H20A—C20—H20C109.5
H12A—C12—H12B109.5H20B—C20—H20C109.5
O1—C12—H12C109.5C4—N1—C3124.0 (2)
H12A—C12—H12C109.5C4—N1—H1A118.0
H12B—C12—H12C109.5C3—N1—H1A118.0
O3—C13—O2121.3 (3)C11—O1—C12118.7 (3)
O3—C13—C2127.7 (3)C13—O2—C14117.5 (2)
O2—C13—C2111.0 (2)C18—O4—C19117.5 (3)
C5—C1—C2—C319.7 (4)C9—C10—C11—C61.9 (5)
C6—C1—C2—C3−107.3 (3)C7—C6—C11—O1−180.0 (2)
C5—C1—C2—C13−161.9 (2)C1—C6—C11—O1−0.9 (4)
C6—C1—C2—C1371.1 (3)C7—C6—C11—C10−2.2 (4)
C13—C2—C3—N1176.3 (3)C1—C6—C11—C10176.8 (3)
C1—C2—C3—N1−5.4 (4)C3—C2—C13—O37.5 (5)
C13—C2—C3—C16−1.2 (5)C1—C2—C13—O3−171.0 (3)
C1—C2—C3—C16177.1 (3)C3—C2—C13—O2−173.4 (3)
N1—C4—C5—C18−172.1 (2)C1—C2—C13—O28.2 (3)
C17—C4—C5—C187.1 (4)C4—C5—C18—O5−9.0 (4)
N1—C4—C5—C17.3 (4)C1—C5—C18—O5171.6 (3)
C17—C4—C5—C1−173.4 (3)C4—C5—C18—O4170.5 (3)
C2—C1—C5—C4−20.6 (3)C1—C5—C18—O4−8.9 (3)
C6—C1—C5—C4107.0 (3)C5—C4—N1—C39.9 (4)
C2—C1—C5—C18158.8 (2)C17—C4—N1—C3−169.4 (3)
C6—C1—C5—C18−73.5 (3)C2—C3—N1—C4−11.0 (4)
C2—C1—C6—C7−119.7 (3)C16—C3—N1—C4166.8 (3)
C5—C1—C6—C7113.7 (3)C10—C11—O1—C128.5 (4)
C2—C1—C6—C1161.3 (3)C6—C11—O1—C12−173.8 (3)
C5—C1—C6—C11−65.3 (3)O3—C13—O2—C142.1 (4)
C11—C6—C7—C80.5 (4)C2—C13—O2—C14−177.1 (2)
C1—C6—C7—C8−178.5 (3)C15—C14—O2—C13−177.1 (3)
C6—C7—C8—C91.5 (5)O5—C18—O4—C193.7 (4)
C7—C8—C9—C10−1.9 (6)C5—C18—O4—C19−175.9 (3)
C8—C9—C10—C110.2 (5)C20—C19—O4—C18−169.0 (4)
C9—C10—C11—O1179.5 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O5i0.862.072.924 (3)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O5i 0.862.072.924 (3)170

Symmetry code: (i) .

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