Literature DB >> 23723925

12-Di-methyl-amino-2,2-di-fluoro-8-phenyl-1λ(5),3-di-aza-2λ(4)-boratri-cyclo-[7.3.0.0(3,7)]dodeca-1(12),4,6,8,10-pentaen-1-ylium.

Zhao-Yun Wang1.   

Abstract

In the title boron-dipyrromethene derivative, C17H16BF2N3, the benzene ring and the boron-dipyrromethene mean plane form a dihedral angle of 55.82 (8)°. In the crystal, pairs of C-H⋯F inter-actions link the mol-ecules, forming inversion dimers. Further C-H⋯F inter-actions link the dimers into a three-dimensional network.

Entities:  

Year:  2013        PMID: 23723925      PMCID: PMC3648305          DOI: 10.1107/S1600536813010404

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and applications of related 4,4-di­fluoro-4-bora-3a,4a-di­aza-s-indacene derivatives, see: Trieflinger et al. (2005 ▶). For related structures, see: Jiao et al. (2011 ▶).

Experimental

Crystal data

C17H16BF2N3 M = 311.14 Monoclinic, a = 7.8033 (6) Å b = 25.524 (2) Å c = 9.9776 (5) Å β = 128.671 (4)° V = 1551.5 (2) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 295 K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.972, T max = 0.981 11054 measured reflections 2736 independent reflections 2025 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.119 S = 1.03 2736 reflections 210 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.14 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813010404/rk2400sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813010404/rk2400Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813010404/rk2400Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H16BF2N3F(000) = 648
Mr = 311.14Dx = 1.332 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4251 reflections
a = 7.8033 (6) Åθ = 2.7–24.3°
b = 25.524 (2) ŵ = 0.10 mm1
c = 9.9776 (5) ÅT = 295 K
β = 128.671 (4)°Block, colourless
V = 1551.5 (2) Å30.30 × 0.20 × 0.20 mm
Z = 4
Bruker SMART APEX CCD diffractometer2736 independent reflections
Radiation source: fine-focus sealed tube2025 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
φ and ω scansθmax = 25.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→8
Tmin = 0.972, Tmax = 0.981k = −30→30
11054 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0582P)2 + 0.2638P] where P = (Fo2 + 2Fc2)/3
2736 reflections(Δ/σ)max = 0.005
210 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.14 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
F1−0.28223 (17)0.91338 (5)0.54009 (14)0.0842 (4)
F2−0.0433 (2)0.98113 (4)0.67169 (16)0.0884 (4)
N10.0902 (2)0.90034 (6)0.65707 (18)0.0593 (4)
N2−0.0100 (2)0.91017 (5)0.84906 (17)0.0543 (4)
N3−0.2640 (3)0.95619 (7)0.8700 (2)0.0779 (5)
C10.1083 (4)0.91003 (9)0.5324 (3)0.0760 (6)
H10.02170.93350.44230.091*
C20.2720 (4)0.88033 (10)0.5591 (3)0.0821 (6)
H20.31550.87980.49100.098*
C30.3621 (3)0.85096 (8)0.7062 (2)0.0685 (5)
H30.47720.82720.75540.082*
C40.2477 (3)0.86380 (7)0.7662 (2)0.0552 (4)
C50.2796 (3)0.84981 (6)0.9186 (2)0.0510 (4)
C60.4562 (3)0.81223 (7)1.0379 (2)0.0563 (4)
C70.4630 (4)0.76322 (7)0.9807 (3)0.0757 (6)
H70.35190.75330.86780.091*
C80.6331 (5)0.72935 (9)1.0903 (4)0.0968 (8)
H80.63660.69661.05130.116*
C90.7971 (5)0.74379 (12)1.2564 (4)0.1039 (9)
H90.91260.72091.32950.125*
C100.7929 (4)0.79204 (11)1.3165 (3)0.0923 (7)
H100.90400.80151.43000.111*
C110.6232 (3)0.82612 (8)1.2073 (2)0.0696 (5)
H110.62030.85871.24740.084*
C120.1544 (3)0.87210 (6)0.9555 (2)0.0512 (4)
C130.1508 (3)0.86084 (7)1.0927 (2)0.0629 (5)
H130.24190.83721.18110.075*
C14−0.0056 (3)0.88989 (8)1.0739 (3)0.0705 (5)
H14−0.04270.88971.14620.085*
C15−0.1061 (3)0.92141 (7)0.9228 (2)0.0621 (5)
C16−0.3699 (4)0.99063 (10)0.7212 (4)0.1032 (8)
H16A−0.26011.00990.72660.155*
H16B−0.46501.01460.72080.155*
H16C−0.45450.97000.61810.155*
C17−0.3488 (4)0.96200 (12)0.9644 (3)0.1063 (9)
H17A−0.31070.93171.03490.159*
H17B−0.50570.96550.88470.159*
H17C−0.28600.99261.03560.159*
B1−0.0669 (3)0.92741 (8)0.6751 (3)0.0601 (5)
U11U22U33U12U13U23
F10.0555 (6)0.1025 (9)0.0600 (7)0.0046 (6)0.0193 (6)−0.0029 (6)
F20.1155 (10)0.0568 (7)0.0922 (9)0.0042 (6)0.0646 (8)0.0128 (6)
N10.0582 (8)0.0667 (9)0.0467 (8)−0.0010 (7)0.0297 (7)0.0060 (7)
N20.0504 (8)0.0549 (8)0.0527 (8)0.0015 (6)0.0299 (7)−0.0012 (6)
N30.0586 (9)0.0861 (12)0.0789 (12)0.0042 (9)0.0379 (9)−0.0200 (9)
C10.0825 (14)0.0895 (14)0.0521 (11)−0.0032 (12)0.0402 (11)0.0119 (10)
C20.0860 (15)0.1096 (17)0.0647 (13)−0.0059 (13)0.0539 (12)0.0010 (12)
C30.0648 (11)0.0866 (13)0.0593 (11)0.0004 (10)0.0414 (10)−0.0020 (10)
C40.0523 (9)0.0622 (10)0.0466 (9)−0.0033 (8)0.0287 (8)−0.0012 (8)
C50.0501 (9)0.0512 (9)0.0462 (9)−0.0036 (7)0.0274 (8)−0.0015 (7)
C60.0579 (10)0.0579 (10)0.0564 (11)0.0046 (8)0.0373 (9)0.0069 (8)
C70.0912 (15)0.0622 (11)0.0837 (14)0.0110 (11)0.0595 (13)0.0051 (10)
C80.122 (2)0.0736 (14)0.128 (2)0.0338 (15)0.094 (2)0.0272 (15)
C90.0907 (18)0.109 (2)0.126 (2)0.0468 (16)0.0742 (19)0.0593 (18)
C100.0657 (13)0.1115 (19)0.0761 (15)0.0170 (13)0.0327 (12)0.0309 (14)
C110.0610 (11)0.0743 (12)0.0601 (12)0.0052 (10)0.0312 (10)0.0095 (10)
C120.0515 (9)0.0515 (9)0.0472 (9)−0.0021 (7)0.0292 (8)−0.0016 (7)
C130.0655 (11)0.0714 (11)0.0520 (10)−0.0016 (9)0.0368 (9)0.0004 (9)
C140.0677 (12)0.0925 (14)0.0606 (12)−0.0045 (11)0.0446 (10)−0.0108 (10)
C150.0522 (10)0.0667 (11)0.0604 (11)−0.0061 (9)0.0317 (9)−0.0164 (9)
C160.0863 (16)0.0873 (16)0.119 (2)0.0278 (14)0.0557 (16)0.0073 (15)
C170.0768 (15)0.141 (2)0.1026 (19)0.0081 (15)0.0569 (15)−0.0398 (16)
B10.0562 (12)0.0545 (11)0.0519 (12)−0.0006 (9)0.0253 (10)0.0022 (9)
F1—B11.392 (2)C6—C71.390 (3)
F2—B11.387 (2)C7—C81.375 (3)
N1—C11.359 (2)C7—H70.9300
N1—C41.376 (2)C8—C91.368 (4)
N1—B11.513 (3)C8—H80.9300
N2—C151.369 (2)C9—C101.379 (4)
N2—C121.420 (2)C9—H90.9300
N2—B11.562 (3)C10—C111.376 (3)
N3—C151.331 (2)C10—H100.9300
N3—C171.458 (3)C11—H110.9300
N3—C161.458 (3)C12—C131.416 (2)
C1—C21.361 (3)C13—C141.337 (3)
C1—H10.9300C13—H130.9300
C2—C31.386 (3)C14—C151.435 (3)
C2—H20.9300C14—H140.9300
C3—C41.388 (3)C16—H16A0.9600
C3—H30.9300C16—H16B0.9600
C4—C51.425 (2)C16—H16C0.9600
C5—C121.365 (2)C17—H17A0.9600
C5—C61.479 (2)C17—H17B0.9600
C6—C111.389 (3)C17—H17C0.9600
C1—N1—C4107.13 (16)C11—C10—C9119.5 (2)
C1—N1—B1125.53 (16)C11—C10—H10120.2
C4—N1—B1127.26 (14)C9—C10—H10120.2
C15—N2—C12106.50 (14)C10—C11—C6120.6 (2)
C15—N2—B1131.83 (15)C10—C11—H11119.7
C12—N2—B1121.37 (14)C6—C11—H11119.7
C15—N3—C17119.6 (2)C5—C12—C13128.79 (16)
C15—N3—C16126.89 (19)C5—C12—N2123.22 (15)
C17—N3—C16113.53 (19)C13—C12—N2107.89 (15)
N1—C1—C2109.95 (18)C14—C13—C12108.66 (17)
N1—C1—H1125.0C14—C13—H13125.7
C2—C1—H1125.0C12—C13—H13125.7
C1—C2—C3107.53 (18)C13—C14—C15108.04 (17)
C1—C2—H2126.2C13—C14—H14126.0
C3—C2—H2126.2C15—C14—H14126.0
C2—C3—C4106.95 (19)N3—C15—N2127.54 (18)
C2—C3—H3126.5N3—C15—C14123.55 (18)
C4—C3—H3126.5N2—C15—C14108.89 (16)
N1—C4—C3108.44 (16)N3—C16—H16A109.5
N1—C4—C5119.19 (15)N3—C16—H16B109.5
C3—C4—C5132.08 (17)H16A—C16—H16B109.5
C12—C5—C4120.46 (15)N3—C16—H16C109.5
C12—C5—C6121.14 (15)H16A—C16—H16C109.5
C4—C5—C6118.36 (15)H16B—C16—H16C109.5
C11—C6—C7118.84 (18)N3—C17—H17A109.5
C11—C6—C5120.53 (16)N3—C17—H17B109.5
C7—C6—C5120.58 (17)H17A—C17—H17B109.5
C8—C7—C6120.3 (2)N3—C17—H17C109.5
C8—C7—H7119.8H17A—C17—H17C109.5
C6—C7—H7119.8H17B—C17—H17C109.5
C9—C8—C7120.1 (2)F2—B1—F1109.21 (15)
C9—C8—H8119.9F2—B1—N1108.58 (16)
C7—C8—H8119.9F1—B1—N1110.18 (16)
C8—C9—C10120.6 (2)F2—B1—N2110.87 (15)
C8—C9—H9119.7F1—B1—N2109.63 (16)
C10—C9—H9119.7N1—B1—N2108.35 (14)
C4—N1—C1—C20.4 (2)C15—N2—C12—C5177.30 (15)
B1—N1—C1—C2177.39 (18)B1—N2—C12—C52.9 (2)
N1—C1—C2—C3−0.4 (3)C15—N2—C12—C130.65 (18)
C1—C2—C3—C40.2 (2)B1—N2—C12—C13−173.74 (15)
C1—N1—C4—C3−0.3 (2)C5—C12—C13—C14−176.43 (17)
B1—N1—C4—C3−177.21 (16)N2—C12—C13—C140.0 (2)
C1—N1—C4—C5174.28 (16)C12—C13—C14—C15−0.6 (2)
B1—N1—C4—C5−2.6 (3)C17—N3—C15—N2178.89 (18)
C2—C3—C4—N10.1 (2)C16—N3—C15—N2−0.4 (3)
C2—C3—C4—C5−173.55 (19)C17—N3—C15—C14−2.5 (3)
N1—C4—C5—C120.4 (2)C16—N3—C15—C14178.2 (2)
C3—C4—C5—C12173.53 (18)C12—N2—C15—N3177.73 (17)
N1—C4—C5—C6−177.34 (15)B1—N2—C15—N3−8.7 (3)
C3—C4—C5—C6−4.2 (3)C12—N2—C15—C14−1.01 (18)
C12—C5—C6—C11−56.0 (2)B1—N2—C15—C14172.56 (17)
C4—C5—C6—C11121.79 (18)C13—C14—C15—N3−177.78 (17)
C12—C5—C6—C7126.68 (19)C13—C14—C15—N21.0 (2)
C4—C5—C6—C7−55.6 (2)C1—N1—B1—F2−51.6 (2)
C11—C6—C7—C8−0.4 (3)C4—N1—B1—F2124.74 (18)
C5—C6—C7—C8177.02 (19)C1—N1—B1—F168.0 (2)
C6—C7—C8—C9−0.1 (4)C4—N1—B1—F1−115.69 (19)
C7—C8—C9—C100.7 (4)C1—N1—B1—N2−172.08 (16)
C8—C9—C10—C11−0.8 (4)C4—N1—B1—N24.2 (2)
C9—C10—C11—C60.3 (3)C15—N2—B1—F263.9 (2)
C7—C6—C11—C100.3 (3)C12—N2—B1—F2−123.27 (17)
C5—C6—C11—C10−177.12 (18)C15—N2—B1—F1−56.7 (2)
C4—C5—C12—C13175.20 (16)C12—N2—B1—F1116.07 (17)
C6—C5—C12—C13−7.1 (3)C15—N2—B1—N1−176.99 (16)
C4—C5—C12—N2−0.7 (2)C12—N2—B1—N1−4.2 (2)
C6—C5—C12—N2176.99 (15)
D—H···AD—HH···AD···AD—H···A
C1—H1···F2i0.932.513.291 (3)142
C17—H17C···F2ii0.962.493.282 (3)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C1—H1⋯F2i 0.932.513.291 (3)142
C17—H17C⋯F2ii 0.962.493.282 (3)140

Symmetry codes: (i) ; (ii) .

  3 in total

1.  Regioselective stepwise bromination of boron dipyrromethene (BODIPY) dyes.

Authors:  Lijuan Jiao; Weidong Pang; Jinyuan Zhou; Yun Wei; Xiaolong Mu; Guifeng Bai; Erhong Hao
Journal:  J Org Chem       Date:  2011-11-23       Impact factor: 4.354

2.  "Turn ON/OFF your LOV light": boron-dipyrromethene-flavin dyads as biomimetic switches derived from the LOV domain.

Authors:  Christian Trieflinger; Knut Rurack; Jörg Daub
Journal:  Angew Chem Int Ed Engl       Date:  2005-04-08       Impact factor: 15.336

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  3 in total

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