Literature DB >> 23723923

2-[(2-Chloro-quinolin-3-yl)(hy-droxy)meth-yl]acrylo-nitrile.

T Anuradha1, J Srinivasan, P R Seshadri, M Bakthadoss.   

Abstract

In the title compound, C13H9ClN2O, the dihedral angle between the acrylo-nitrile C=C-CN plane and the quilonine ring system is 71.3 (2)°. In the crystal, mol-ecules are linked by O-H⋯N hydrogen bonds, forming chains along [01-1]. The chains are linked into a three-dimensional network through C-H⋯N inter-actions.

Entities:  

Year:  2013        PMID: 23723923      PMCID: PMC3648303          DOI: 10.1107/S1600536813010155

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of quinoline and arcylo­nitrile compounds, see: Dutta et al. (2002 ▶); Ohsumi et al. (1998 ▶); Saczewski et al. (2004 ▶).

Experimental

Crystal data

C13H9ClN2O M = 244.67 Orthorhombic, a = 12.2879 (12) Å b = 9.6422 (11) Å c = 10.3642 (12) Å V = 1228.0 (2) Å3 Z = 4 Mo Kα radiation μ = 0.30 mm−1 T = 293 K 0.20 × 0.15 × 0.10 mm

Data collection

Bruker SMART APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.943, T max = 0.971 6334 measured reflections 2423 independent reflections 2144 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.090 S = 1.02 2423 reflections 156 parameters 1 restraint H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.14 e Å−3 Absolute structure: Flack (1983 ▶), 819 Friedel pairs Flack parameter: 0.02 (7) Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97, PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813010155/is5260sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813010155/is5260Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813010155/is5260Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H9ClN2OF(000) = 504
Mr = 244.67Dx = 1.323 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 2423 reflections
a = 12.2879 (12) Åθ = 2.7–28.3°
b = 9.6422 (11) ŵ = 0.30 mm1
c = 10.3642 (12) ÅT = 293 K
V = 1228.0 (2) Å3Block, colourless
Z = 40.20 × 0.15 × 0.10 mm
Bruker SMART APEXII area-detector diffractometer2423 independent reflections
Radiation source: fine-focus sealed tube2144 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
ω and φ scansθmax = 28.3°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −15→16
Tmin = 0.943, Tmax = 0.971k = −12→11
6334 measured reflectionsl = −13→11
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.034w = 1/[σ2(Fo2) + (0.0445P)2 + 0.0827P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.090(Δ/σ)max < 0.001
S = 1.02Δρmax = 0.14 e Å3
2423 reflectionsΔρmin = −0.14 e Å3
156 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
1 restraintExtinction coefficient: 0.015 (3)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 819 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.02 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl0.29993 (4)1.02688 (6)0.48433 (7)0.06601 (17)
O10.22815 (13)0.60309 (15)0.62021 (17)0.0682 (4)
H10.26560.57700.68110.102*
N10.16299 (12)0.95206 (16)0.30888 (16)0.0476 (3)
N2−0.02036 (17)0.7266 (3)0.7546 (3)0.0870 (7)
C10.20463 (12)0.91298 (18)0.41795 (18)0.0438 (4)
C20.08750 (12)0.86715 (18)0.25212 (17)0.0441 (4)
C30.04132 (16)0.9065 (2)0.1326 (2)0.0574 (5)
H30.06170.98970.09410.069*
C4−0.03276 (18)0.8230 (2)0.0741 (2)0.0643 (5)
H4−0.06280.8496−0.00450.077*
C5−0.06450 (18)0.6974 (3)0.1306 (2)0.0698 (6)
H5−0.11570.64180.08940.084*
C6−0.02145 (18)0.6556 (2)0.2451 (2)0.0637 (5)
H6−0.04280.57160.28130.076*
C70.05581 (13)0.73997 (18)0.30916 (19)0.0467 (4)
C80.10462 (14)0.70438 (18)0.42751 (19)0.0500 (4)
H80.08500.62190.46780.060*
C90.18017 (11)0.78848 (16)0.4845 (2)0.0427 (3)
C100.23288 (14)0.7498 (2)0.6112 (2)0.0499 (4)
H100.30910.77960.61060.060*
C110.17479 (15)0.8165 (2)0.7227 (2)0.0531 (4)
C120.06476 (15)0.7679 (2)0.7430 (2)0.0596 (5)
C130.2182 (2)0.9086 (3)0.8014 (3)0.0818 (8)
H13A0.17800.94280.87040.098*
H13B0.28900.93940.78780.098*
U11U22U33U12U13U23
Cl0.0630 (2)0.0706 (3)0.0645 (3)−0.0222 (2)−0.0026 (3)0.0007 (3)
O10.0915 (10)0.0563 (8)0.0569 (9)0.0187 (7)−0.0204 (8)0.0116 (7)
N10.0539 (7)0.0462 (8)0.0426 (8)−0.0018 (6)0.0047 (7)0.0098 (6)
N20.0582 (10)0.1206 (18)0.0821 (17)−0.0155 (11)0.0037 (10)−0.0078 (14)
C10.0430 (7)0.0452 (8)0.0432 (9)−0.0038 (6)0.0047 (7)0.0019 (7)
C20.0484 (7)0.0457 (8)0.0382 (9)0.0043 (6)0.0028 (7)0.0058 (7)
C30.0692 (10)0.0596 (11)0.0433 (11)0.0076 (9)0.0002 (9)0.0132 (9)
C40.0708 (11)0.0765 (14)0.0456 (11)0.0133 (10)−0.0115 (10)0.0020 (10)
C50.0709 (11)0.0768 (14)0.0616 (14)−0.0064 (10)−0.0156 (12)−0.0068 (12)
C60.0722 (11)0.0581 (11)0.0609 (14)−0.0126 (9)−0.0076 (11)0.0040 (10)
C70.0521 (8)0.0450 (9)0.0430 (10)0.0008 (7)−0.0004 (8)0.0041 (7)
C80.0586 (8)0.0426 (8)0.0487 (10)−0.0024 (7)−0.0025 (8)0.0123 (7)
C90.0456 (6)0.0449 (8)0.0376 (8)0.0054 (5)−0.0010 (8)0.0059 (8)
C100.0493 (8)0.0561 (10)0.0443 (9)0.0061 (7)−0.0079 (8)0.0077 (8)
C110.0526 (8)0.0632 (11)0.0436 (10)−0.0009 (8)−0.0064 (8)0.0053 (9)
C120.0574 (10)0.0746 (13)0.0469 (11)0.0031 (9)−0.0044 (9)−0.0002 (9)
C130.0761 (13)0.102 (2)0.0678 (16)−0.0144 (13)0.0020 (13)−0.0238 (16)
Cl—C11.7466 (17)C5—H50.9300
O1—C101.419 (3)C6—C71.416 (3)
O1—H10.8200C6—H60.9300
N1—C11.297 (2)C7—C81.408 (3)
N1—C21.370 (2)C8—C91.367 (2)
N2—C121.125 (3)C8—H80.9300
C1—C91.417 (2)C9—C101.511 (3)
C2—C31.414 (3)C10—C111.504 (3)
C2—C71.416 (2)C10—H100.9800
C3—C41.358 (3)C11—C131.318 (3)
C3—H30.9300C11—C121.447 (3)
C4—C51.401 (4)C13—H13A0.9300
C4—H40.9300C13—H13B0.9300
C5—C61.360 (3)
C10—O1—H1109.5C8—C7—C2117.24 (16)
C1—N1—C2117.89 (15)C6—C7—C2119.12 (18)
N1—C1—C9125.93 (16)C9—C8—C7121.42 (16)
N1—C1—Cl115.16 (13)C9—C8—H8119.3
C9—C1—Cl118.90 (14)C7—C8—H8119.3
N1—C2—C3119.17 (16)C8—C9—C1115.88 (17)
N1—C2—C7121.64 (16)C8—C9—C10121.34 (16)
C3—C2—C7119.19 (17)C1—C9—C10122.78 (15)
C4—C3—C2120.07 (18)O1—C10—C11110.90 (18)
C4—C3—H3120.0O1—C10—C9106.62 (16)
C2—C3—H3120.0C11—C10—C9111.04 (14)
C3—C4—C5120.80 (19)O1—C10—H10109.4
C3—C4—H4119.6C11—C10—H10109.4
C5—C4—H4119.6C9—C10—H10109.4
C6—C5—C4120.8 (2)C13—C11—C12120.5 (2)
C6—C5—H5119.6C13—C11—C10124.89 (19)
C4—C5—H5119.6C12—C11—C10114.60 (17)
C5—C6—C7120.0 (2)N2—C12—C11177.2 (3)
C5—C6—H6120.0C11—C13—H13A120.0
C7—C6—H6120.0C11—C13—H13B120.0
C8—C7—C6123.64 (17)H13A—C13—H13B120.0
C2—N1—C1—C90.7 (3)C2—C7—C8—C9−0.6 (3)
C2—N1—C1—Cl−179.85 (13)C7—C8—C9—C10.7 (3)
C1—N1—C2—C3−179.50 (16)C7—C8—C9—C10−179.68 (17)
C1—N1—C2—C7−0.5 (2)N1—C1—C9—C8−0.8 (3)
N1—C2—C3—C4179.27 (18)Cl—C1—C9—C8179.74 (13)
C7—C2—C3—C40.2 (3)N1—C1—C9—C10179.58 (17)
C2—C3—C4—C50.0 (3)Cl—C1—C9—C100.2 (2)
C3—C4—C5—C6−0.4 (4)C8—C9—C10—O125.3 (2)
C4—C5—C6—C70.5 (4)C1—C9—C10—O1−155.10 (16)
C5—C6—C7—C8−179.8 (2)C8—C9—C10—C11−95.6 (2)
C5—C6—C7—C2−0.3 (3)C1—C9—C10—C1184.0 (2)
N1—C2—C7—C80.4 (2)O1—C10—C11—C13125.4 (2)
C3—C2—C7—C8179.43 (17)C9—C10—C11—C13−116.3 (3)
N1—C2—C7—C6−179.12 (18)O1—C10—C11—C12−52.3 (2)
C3—C2—C7—C6−0.1 (3)C9—C10—C11—C1266.1 (2)
C6—C7—C8—C9178.9 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1···N1i0.821.992.781 (2)161
C10—H10···N2ii0.982.573.385 (3)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N1i 0.821.992.781 (2)161
C10—H10⋯N2ii 0.982.573.385 (3)140

Symmetry codes: (i) ; (ii) .

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