Literature DB >> 23723922

3-Hy-droxy-1-[(morpholin-4-yl)meth-yl]pyridazin-6(1H)-one.

P R Santhi1, G Selvanathan, G Poongothai, T Srinivasan, D Velmurugan.   

Abstract

In the title compound, C9H13N3O3, the morpholine ring adopts a chair conformation and its mean plane makes a dihedral angle of 68.00 (11)° with the pyridazine ring. The carbonyl O atom deviates from the plane of the pyridazine ring by 0.0482 (12) Å. An intra-molecular C-H⋯O hydrogen bond occurs. In the crystal, mol-ecules are linked by O-H⋯O and C-H⋯O hydrogen bonds, forming chains along [1-10].

Entities:  

Year:  2013        PMID: 23723922      PMCID: PMC3648302          DOI: 10.1107/S1600536813010477

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of morpholine derivatives, see: Lan et al. (2010 ▶); Raparti et al. (2009 ▶). For a related structure, see: Wang et al. (2012 ▶).

Experimental

Crystal data

C9H13N3O3 M = 211.22 Triclinic, a = 5.2110 (3) Å b = 5.4165 (4) Å c = 18.4544 (12) Å α = 87.232 (2)° β = 83.993 (6)° γ = 80.862 (4)° V = 511.18 (6) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker SMART APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.969, T max = 0.979 8839 measured reflections 2530 independent reflections 1679 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.158 S = 1.07 2530 reflections 136 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813010477/pv2627sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813010477/pv2627Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813010477/pv2627Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H13N3O3Z = 2
Mr = 211.22F(000) = 224
Triclinic, P1Dx = 1.372 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.2110 (3) ÅCell parameters from 2530 reflections
b = 5.4165 (4) Åθ = 1.1–28.4°
c = 18.4544 (12) ŵ = 0.11 mm1
α = 87.232 (2)°T = 293 K
β = 83.993 (6)°Block, colourless
γ = 80.862 (4)°0.30 × 0.25 × 0.20 mm
V = 511.18 (6) Å3
Bruker SMART APEXII area-detector diffractometer2530 independent reflections
Radiation source: fine-focus sealed tube1679 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
ω and φ scansθmax = 28.4°, θmin = 1.1°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −6→6
Tmin = 0.969, Tmax = 0.979k = −7→7
8839 measured reflectionsl = −24→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.158H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0734P)2 + 0.1237P] where P = (Fo2 + 2Fc2)/3
2530 reflections(Δ/σ)max < 0.001
136 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2321 (3)0.5749 (3)0.10380 (9)0.0350 (4)
C20.3128 (3)0.3529 (3)0.06412 (9)0.0393 (4)
H20.22340.31830.02570.047*
C30.5197 (3)0.1956 (3)0.08329 (9)0.0397 (4)
H30.57540.04930.05800.048*
C40.6579 (3)0.2491 (3)0.14265 (9)0.0341 (4)
C50.6847 (3)0.5467 (3)0.23871 (9)0.0382 (4)
H5A0.86980.48200.23160.046*
H5B0.66700.72780.23560.046*
C60.6498 (5)0.2102 (4)0.32915 (12)0.0650 (6)
H6A0.83430.15200.31660.078*
H6B0.55100.11630.30180.078*
C70.5809 (7)0.1687 (6)0.40974 (14)0.0896 (9)
H7A0.6172−0.00860.42210.108*
H7B0.68880.25410.43670.108*
C80.2589 (6)0.5165 (7)0.41244 (14)0.0896 (9)
H8A0.36270.60650.43940.107*
H8B0.07610.57670.42690.107*
C90.3172 (4)0.5693 (5)0.33187 (11)0.0609 (6)
H9A0.20660.48830.30460.073*
H9B0.28210.74800.32140.073*
N10.3486 (3)0.6309 (2)0.15815 (7)0.0350 (3)
N20.5574 (2)0.4640 (2)0.17747 (7)0.0326 (3)
N30.5895 (3)0.4751 (3)0.31060 (8)0.0430 (4)
O10.0275 (2)0.7323 (2)0.08280 (7)0.0511 (4)
H1−0.00280.85300.10920.077*
O20.8565 (2)0.1128 (2)0.16258 (7)0.0484 (4)
O30.3137 (5)0.2588 (5)0.43038 (10)0.1016 (7)
U11U22U33U12U13U23
C10.0322 (8)0.0339 (8)0.0352 (8)0.0063 (6)−0.0032 (6)−0.0019 (6)
C20.0397 (9)0.0387 (9)0.0382 (9)0.0042 (7)−0.0095 (7)−0.0088 (7)
C30.0432 (10)0.0327 (9)0.0403 (9)0.0070 (7)−0.0066 (7)−0.0111 (7)
C40.0337 (8)0.0291 (8)0.0366 (8)0.0037 (6)−0.0019 (6)−0.0027 (6)
C50.0377 (9)0.0374 (9)0.0411 (9)−0.0050 (7)−0.0100 (7)−0.0064 (7)
C60.0911 (17)0.0508 (13)0.0530 (12)−0.0103 (12)−0.0110 (11)0.0064 (10)
C70.132 (3)0.0806 (19)0.0567 (15)−0.0218 (18)−0.0130 (16)0.0188 (13)
C80.0836 (19)0.125 (3)0.0571 (15)−0.0191 (18)0.0134 (13)−0.0112 (16)
C90.0515 (12)0.0807 (16)0.0503 (12)−0.0107 (11)0.0010 (9)−0.0100 (11)
N10.0349 (7)0.0299 (7)0.0373 (7)0.0065 (5)−0.0063 (6)−0.0043 (5)
N20.0314 (7)0.0292 (7)0.0353 (7)0.0039 (5)−0.0066 (5)−0.0042 (5)
N30.0480 (9)0.0448 (9)0.0375 (8)−0.0066 (7)−0.0093 (6)−0.0049 (6)
O10.0495 (8)0.0477 (8)0.0504 (8)0.0227 (6)−0.0192 (6)−0.0131 (6)
O20.0417 (7)0.0458 (7)0.0523 (8)0.0175 (6)−0.0137 (6)−0.0091 (6)
O30.1169 (18)0.1262 (19)0.0662 (12)−0.0507 (15)0.0097 (11)0.0167 (12)
C1—N11.297 (2)C6—H6A0.9700
C1—O11.3341 (18)C6—H6B0.9700
C1—C21.421 (2)C7—O31.419 (4)
C2—C31.331 (2)C7—H7A0.9700
C2—H20.9300C7—H7B0.9700
C3—C41.437 (2)C8—O31.410 (4)
C3—H30.9300C8—C91.509 (3)
C4—O21.2497 (18)C8—H8A0.9700
C4—N21.360 (2)C8—H8B0.9700
C5—N31.425 (2)C9—N31.449 (3)
C5—N21.4892 (19)C9—H9A0.9700
C5—H5A0.9700C9—H9B0.9700
C5—H5B0.9700N1—N21.3660 (17)
C6—N31.452 (3)O1—H10.8200
C6—C71.508 (3)
N1—C1—O1119.33 (14)C6—C7—H7A109.4
N1—C1—C2123.26 (14)O3—C7—H7B109.4
O1—C1—C2117.41 (14)C6—C7—H7B109.4
C3—C2—C1118.37 (15)H7A—C7—H7B108.0
C3—C2—H2120.8O3—C8—C9111.8 (2)
C1—C2—H2120.8O3—C8—H8A109.3
C2—C3—C4120.80 (14)C9—C8—H8A109.3
C2—C3—H3119.6O3—C8—H8B109.3
C4—C3—H3119.6C9—C8—H8B109.3
O2—C4—N2120.60 (14)H8A—C8—H8B107.9
O2—C4—C3124.21 (14)N3—C9—C8108.85 (19)
N2—C4—C3115.19 (13)N3—C9—H9A109.9
N3—C5—N2116.93 (13)C8—C9—H9A109.9
N3—C5—H5A108.1N3—C9—H9B109.9
N2—C5—H5A108.1C8—C9—H9B109.9
N3—C5—H5B108.1H9A—C9—H9B108.3
N2—C5—H5B108.1C1—N1—N2117.12 (12)
H5A—C5—H5B107.3C4—N2—N1125.20 (13)
N3—C6—C7109.2 (2)C4—N2—C5121.09 (13)
N3—C6—H6A109.8N1—N2—C5113.57 (12)
C7—C6—H6A109.8C5—N3—C9115.28 (15)
N3—C6—H6B109.8C5—N3—C6115.05 (15)
C7—C6—H6B109.8C9—N3—C6110.95 (18)
H6A—C6—H6B108.3C1—O1—H1109.5
O3—C7—C6111.4 (2)C8—O3—C7109.8 (2)
O3—C7—H7A109.4
N1—C1—C2—C3−0.6 (3)C1—N1—N2—C42.5 (2)
O1—C1—C2—C3178.72 (16)C1—N1—N2—C5178.12 (14)
C1—C2—C3—C40.0 (3)N3—C5—N2—C4−94.05 (18)
C2—C3—C4—O2−178.44 (17)N3—C5—N2—N190.12 (17)
C2—C3—C4—N21.7 (2)N2—C5—N3—C9−61.2 (2)
N3—C6—C7—O357.7 (3)N2—C5—N3—C669.9 (2)
O3—C8—C9—N3−58.1 (3)C8—C9—N3—C5−170.26 (19)
O1—C1—N1—N2−179.85 (14)C8—C9—N3—C656.7 (2)
C2—C1—N1—N2−0.5 (2)C7—C6—N3—C5170.00 (19)
O2—C4—N2—N1177.10 (14)C7—C6—N3—C9−56.9 (3)
C3—C4—N2—N1−3.0 (2)C9—C8—O3—C759.2 (3)
O2—C4—N2—C51.8 (2)C6—C7—O3—C8−58.9 (3)
C3—C4—N2—C5−178.32 (14)
D—H···AD—HH···AD···AD—H···A
O1—H1···O2i0.821.772.5777 (16)167
C2—H2···O1ii0.932.553.478 (2)175
C5—H5A···O20.972.442.772 (2)100
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯O2i 0.821.772.5777 (16)167
C2—H2⋯O1ii 0.932.553.478 (2)175
C5—H5A⋯O20.972.442.772 (2)100

Symmetry codes: (i) ; (ii) .

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