Literature DB >> 23723918

2,2'-(Carbono-thio-yldisulfanedi-yl)bis-(2-methyl-propanoic acid).

Rodolfo Moreno-Fuquen1, Carlos Grande, Rigoberto C Advincula, Juan C Tenorio, Javier Ellena.   

Abstract

The mol-ecular structure of the title compound, C9H14O4S3, exhibits intra-molecular C-H⋯S hydrogen bonds. In the crystal, pairs of O-H⋯O hydrogen bonds lead to the formation of centrosymmetric dimers, which are in turn connected by weak C-H⋯O inter-actions. The combination of these inter-actions generates edge-fused R 2 (2)(8) and R 2 (2)(20) rings running along [211].

Entities:  

Year:  2013        PMID: 23723918      PMCID: PMC3648298          DOI: 10.1107/S1600536813010179

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pharmaceutical properties of tri­thio­carbonates, see: Dehmel et al. (2007 ▶). For tri­thio­carbonates as inter­mediates in organic synthesis, see: Metzner (1996 ▶). For the control of polymerization reactions of tri­thio­carbonates, see: Harrisson & Wooley (2005 ▶); Bilalis et al. (2006 ▶); Millard et al. (2006 ▶). For radical polymerization with RAFT reactions, see: Moad et al. (2005 ▶). For related structures, see: El-khateeb & Roller (2007 ▶). For hydrogen bonding, see: Nardelli (1995 ▶). For graph-set motifs, see: Etter (1990 ▶). For the synthesis, see: Lai et al. (2002 ▶).

Experimental

Crystal data

C9H14O4S3 M = 282.41 Monoclinic, a = 10.4044 (2) Å b = 10.4947 (2) Å c = 13.7744 (3) Å β = 117.363 (1)° V = 1335.76 (5) Å3 Z = 4 Mo Kα radiation μ = 0.55 mm−1 T = 295 K 0.34 × 0.29 × 0.23 mm

Data collection

Nonius KappaCCD diffractometer 5423 measured reflections 2825 independent reflections 2273 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.084 S = 1.05 2825 reflections 151 parameters 1 restraint H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.24 e Å−3 Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813010179/zq2200sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813010179/zq2200Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H14O4S3F(000) = 592
Mr = 282.41Dx = 1.404 Mg m3
Monoclinic, P21/cMelting point < 447(1) K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 10.4044 (2) ÅCell parameters from 4448 reflections
b = 10.4947 (2) Åθ = 2.9–26.4°
c = 13.7744 (3) ŵ = 0.55 mm1
β = 117.363 (1)°T = 295 K
V = 1335.76 (5) Å3Block, colourless
Z = 40.34 × 0.29 × 0.23 mm
Nonius KappaCCD diffractometer2273 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.022
Graphite monochromatorθmax = 26.7°, θmin = 2.9°
CCD rotation images, thick slices scansh = −13→13
5423 measured reflectionsk = −12→13
2825 independent reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.084H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.040P)2 + 0.2778P] where P = (Fo2 + 2Fc2)/3
2825 reflections(Δ/σ)max < 0.001
151 parametersΔρmax = 0.24 e Å3
1 restraintΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.10424 (5)0.69853 (5)0.04522 (4)0.05515 (16)
S20.12916 (4)0.78396 (4)0.26245 (3)0.04274 (14)
S30.37515 (4)0.67719 (5)0.26019 (3)0.04675 (14)
O10.33615 (14)0.42986 (12)0.13674 (9)0.0503 (3)
H10.30780.36960.09410.075*
O20.34295 (12)0.52637 (11)−0.00505 (9)0.0455 (3)
O3−0.14354 (12)0.62947 (11)0.14151 (9)0.0445 (3)
H3−0.20660.58240.09790.067*
O4−0.23775 (13)0.76463 (12)0.00151 (9)0.0483 (3)
C10.19482 (17)0.71974 (15)0.17693 (13)0.0381 (4)
C20.45203 (17)0.63284 (17)0.16830 (13)0.0419 (4)
C3−0.05423 (17)0.84249 (15)0.17297 (12)0.0366 (3)
C40.36796 (16)0.52512 (16)0.09110 (13)0.0383 (4)
C50.4659 (2)0.74751 (19)0.10631 (17)0.0558 (5)
H5A0.37140.78110.05980.084*
H5B0.51150.72200.06270.084*
H5C0.52340.81180.15740.084*
C60.60223 (18)0.5785 (2)0.24740 (15)0.0561 (5)
H6A0.64950.54810.20630.084*
H6B0.59060.50950.28840.084*
H6C0.65980.64430.29660.084*
C7−0.15123 (16)0.74014 (15)0.09617 (13)0.0361 (3)
C8−0.0491 (2)0.96101 (17)0.11115 (16)0.0554 (5)
H8A−0.14530.99390.06950.083*
H8B−0.00930.93940.06270.083*
H8C0.01051.02440.16220.083*
C9−0.11435 (18)0.87531 (18)0.25362 (14)0.0477 (4)
H9A−0.11480.80010.29310.072*
H9B−0.21130.90720.21380.072*
H9C−0.05440.93900.30410.072*
U11U22U33U12U13U23
S10.0460 (3)0.0823 (4)0.0357 (2)0.0060 (2)0.0175 (2)−0.0126 (2)
S20.0379 (2)0.0577 (3)0.0339 (2)−0.00402 (18)0.01772 (18)−0.01094 (18)
S30.0382 (2)0.0629 (3)0.0380 (2)−0.00095 (19)0.01655 (19)−0.0126 (2)
O10.0637 (8)0.0455 (7)0.0407 (6)−0.0137 (6)0.0231 (6)−0.0044 (5)
O20.0509 (7)0.0515 (7)0.0396 (6)−0.0110 (6)0.0254 (5)−0.0085 (5)
O30.0501 (7)0.0375 (7)0.0386 (6)−0.0082 (5)0.0140 (5)0.0010 (5)
O40.0501 (7)0.0431 (7)0.0375 (7)0.0021 (5)0.0079 (6)0.0026 (5)
C10.0384 (8)0.0397 (9)0.0386 (7)−0.0071 (7)0.0197 (7)−0.0083 (7)
C20.0368 (8)0.0488 (10)0.0438 (9)−0.0072 (7)0.0217 (7)−0.0121 (8)
C30.0413 (8)0.0358 (9)0.0351 (8)−0.0033 (7)0.0195 (7)−0.0046 (6)
C40.0327 (8)0.0432 (9)0.0411 (9)−0.0018 (7)0.0186 (7)−0.0047 (7)
C50.0592 (12)0.0519 (11)0.0653 (12)−0.0185 (9)0.0363 (10)−0.0126 (9)
C60.0375 (9)0.0708 (13)0.0572 (11)−0.0017 (9)0.0192 (8)−0.0141 (10)
C70.0369 (8)0.0361 (9)0.0369 (9)0.0004 (7)0.0183 (7)−0.0014 (7)
C80.0770 (13)0.0376 (10)0.0559 (11)−0.0077 (9)0.0342 (10)−0.0017 (8)
C90.0470 (10)0.0541 (11)0.0478 (10)−0.0012 (8)0.0268 (8)−0.0115 (8)
S1—C11.6301 (16)C3—C81.522 (2)
S2—C11.7460 (16)C3—C91.544 (2)
S2—C31.8372 (16)C5—H5A0.9600
S3—C11.7484 (17)C5—H5B0.9600
S3—C21.8410 (16)C5—H5C0.9600
O1—C41.302 (2)C6—H6A0.9600
O1—H10.8200C6—H6B0.9600
O2—C41.2268 (18)C6—H6C0.9600
O3—C71.3037 (19)C8—H8A0.9600
O3—H30.8200C8—H8B0.9600
O4—C71.2238 (18)C8—H8C0.9600
C2—C51.520 (3)C9—H9A0.9600
C2—C41.523 (2)C9—H9B0.9600
C2—C61.546 (2)C9—H9C0.9600
C3—C71.520 (2)
C1—S2—C3106.51 (7)C2—C5—H5C109.5
C1—S3—C2106.73 (7)H5A—C5—H5C109.5
C4—O1—H1109.5H5B—C5—H5C109.5
C7—O3—H3109.5C2—C6—H6A109.5
S1—C1—S2126.75 (10)C2—C6—H6B109.5
S1—C1—S3126.32 (9)H6A—C6—H6B109.5
S2—C1—S3106.90 (9)C2—C6—H6C109.5
C5—C2—C4111.58 (14)H6A—C6—H6C109.5
C5—C2—C6111.21 (15)H6B—C6—H6C109.5
C4—C2—C6106.77 (14)O4—C7—O3123.42 (15)
C5—C2—S3111.67 (12)O4—C7—C3121.41 (15)
C4—C2—S3112.10 (11)O3—C7—C3114.91 (13)
C6—C2—S3103.10 (11)C3—C8—H8A109.5
C7—C3—C8111.77 (14)C3—C8—H8B109.5
C7—C3—C9107.43 (13)H8A—C8—H8B109.5
C8—C3—C9110.50 (14)C3—C8—H8C109.5
C7—C3—S2112.54 (11)H8A—C8—H8C109.5
C8—C3—S2110.85 (12)H8B—C8—H8C109.5
C9—C3—S2103.37 (11)C3—C9—H9A109.5
O2—C4—O1123.69 (15)C3—C9—H9B109.5
O2—C4—C2120.97 (15)H9A—C9—H9B109.5
O1—C4—C2115.13 (13)C3—C9—H9C109.5
C2—C5—H5A109.5H9A—C9—H9C109.5
C2—C5—H5B109.5H9B—C9—H9C109.5
H5A—C5—H5B109.5
S1—S1—C1—S20.00 (2)C1—S2—C3—C9170.36 (11)
S1—S1—C1—S30.00 (5)C5—C2—C4—O213.2 (2)
C3—S2—C1—S1−7.38 (14)C6—C2—C4—O2−108.50 (17)
C3—S2—C1—S1−7.38 (14)S3—C2—C4—O2139.30 (13)
C3—S2—C1—S3174.63 (8)C5—C2—C4—O1−171.90 (14)
C2—S3—C1—S110.52 (14)C6—C2—C4—O166.40 (17)
C2—S3—C1—S110.52 (14)S3—C2—C4—O1−45.80 (17)
C2—S3—C1—S2−171.47 (8)C8—C3—C7—O4−15.6 (2)
C1—S3—C2—C568.46 (14)C9—C3—C7—O4105.74 (17)
C1—S3—C2—C4−57.59 (14)S2—C3—C7—O4−141.14 (13)
C1—S3—C2—C6−172.07 (12)C8—C3—C7—O3170.06 (14)
C1—S2—C3—C754.77 (13)C9—C3—C7—O3−68.56 (18)
C1—S2—C3—C8−71.23 (13)S2—C3—C7—O344.56 (16)
D—H···AD—HH···AD···AD—H···A
C8—H8B···S10.962.853.506 (2)127
C5—H5A···S10.962.833.4955 (19)127
O1—H1···O4i0.821.842.6549 (17)178
O3—H3···O2i0.821.812.6321 (15)178
C6—H6C···O4ii0.962.693.518 (2)144
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C8—H8B⋯S10.962.853.506 (2)127
C5—H5A⋯S10.962.833.4955 (19)127
O1—H1⋯O4i 0.821.842.6549 (17)178
O3—H3⋯O2i 0.821.812.6321 (15)178
C6—H6C⋯O4ii 0.962.693.518 (2)144

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Shell-crosslinked nanostructures from amphiphilic AB and ABA block copolymers of styrene-alt-(maleic anhydride) and styrene: polymerization, assembly and stabilization in one pot.

Authors:  Simon Harrisson; Karen L Wooley
Journal:  Chem Commun (Camb)       Date:  2005-05-12       Impact factor: 6.222

3.  Trithiocarbonates: exploration of a new head group for HDAC inhibitors.

Authors:  Florian Dehmel; Thomas Ciossek; Thomas Maier; Steffen Weinbrenner; Beate Schmidt; Martin Zoche; Thomas Beckers
Journal:  Bioorg Med Chem Lett       Date:  2007-06-26       Impact factor: 2.823

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.