| Literature DB >> 23723918 |
Rodolfo Moreno-Fuquen1, Carlos Grande, Rigoberto C Advincula, Juan C Tenorio, Javier Ellena.
Abstract
The mol-ecular structure of the title compound, C9H14O4S3, exhibits intra-molecular C-H⋯S hydrogen bonds. In the crystal, pairs of O-H⋯O hydrogen bonds lead to the formation of centrosymmetric dimers, which are in turn connected by weak C-H⋯O inter-actions. The combination of these inter-actions generates edge-fused R 2 (2)(8) and R 2 (2)(20) rings running along [211].Entities:
Year: 2013 PMID: 23723918 PMCID: PMC3648298 DOI: 10.1107/S1600536813010179
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H14O4S3 | |
| Monoclinic, | Melting point < 447(1) K |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 4448 reflections | |
| θ = 2.9–26.4° | |
| µ = 0.55 mm−1 | |
| β = 117.363 (1)° | |
| Block, colourless | |
| 0.34 × 0.29 × 0.23 mm |
| Nonius KappaCCD diffractometer | 2273 reflections with |
| Radiation source: fine-focus sealed tube | |
| Graphite monochromator | θmax = 26.7°, θmin = 2.9° |
| CCD rotation images, thick slices scans | |
| 5423 measured reflections | |
| 2825 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2825 reflections | (Δ/σ)max < 0.001 |
| 151 parameters | Δρmax = 0.24 e Å−3 |
| 1 restraint | Δρmin = −0.24 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.10424 (5) | 0.69853 (5) | 0.04522 (4) | 0.05515 (16) | |
| S2 | 0.12916 (4) | 0.78396 (4) | 0.26245 (3) | 0.04274 (14) | |
| S3 | 0.37515 (4) | 0.67719 (5) | 0.26019 (3) | 0.04675 (14) | |
| O1 | 0.33615 (14) | 0.42986 (12) | 0.13674 (9) | 0.0503 (3) | |
| H1 | 0.3078 | 0.3696 | 0.0941 | 0.075* | |
| O2 | 0.34295 (12) | 0.52637 (11) | −0.00505 (9) | 0.0455 (3) | |
| O3 | −0.14354 (12) | 0.62947 (11) | 0.14151 (9) | 0.0445 (3) | |
| H3 | −0.2066 | 0.5824 | 0.0979 | 0.067* | |
| O4 | −0.23775 (13) | 0.76463 (12) | 0.00151 (9) | 0.0483 (3) | |
| C1 | 0.19482 (17) | 0.71974 (15) | 0.17693 (13) | 0.0381 (4) | |
| C2 | 0.45203 (17) | 0.63284 (17) | 0.16830 (13) | 0.0419 (4) | |
| C3 | −0.05423 (17) | 0.84249 (15) | 0.17297 (12) | 0.0366 (3) | |
| C4 | 0.36796 (16) | 0.52512 (16) | 0.09110 (13) | 0.0383 (4) | |
| C5 | 0.4659 (2) | 0.74751 (19) | 0.10631 (17) | 0.0558 (5) | |
| H5A | 0.3714 | 0.7811 | 0.0598 | 0.084* | |
| H5B | 0.5115 | 0.7220 | 0.0627 | 0.084* | |
| H5C | 0.5234 | 0.8118 | 0.1574 | 0.084* | |
| C6 | 0.60223 (18) | 0.5785 (2) | 0.24740 (15) | 0.0561 (5) | |
| H6A | 0.6495 | 0.5481 | 0.2063 | 0.084* | |
| H6B | 0.5906 | 0.5095 | 0.2884 | 0.084* | |
| H6C | 0.6598 | 0.6443 | 0.2966 | 0.084* | |
| C7 | −0.15123 (16) | 0.74014 (15) | 0.09617 (13) | 0.0361 (3) | |
| C8 | −0.0491 (2) | 0.96101 (17) | 0.11115 (16) | 0.0554 (5) | |
| H8A | −0.1453 | 0.9939 | 0.0695 | 0.083* | |
| H8B | −0.0093 | 0.9394 | 0.0627 | 0.083* | |
| H8C | 0.0105 | 1.0244 | 0.1622 | 0.083* | |
| C9 | −0.11435 (18) | 0.87531 (18) | 0.25362 (14) | 0.0477 (4) | |
| H9A | −0.1148 | 0.8001 | 0.2931 | 0.072* | |
| H9B | −0.2113 | 0.9072 | 0.2138 | 0.072* | |
| H9C | −0.0544 | 0.9390 | 0.3041 | 0.072* |
| S1 | 0.0460 (3) | 0.0823 (4) | 0.0357 (2) | 0.0060 (2) | 0.0175 (2) | −0.0126 (2) |
| S2 | 0.0379 (2) | 0.0577 (3) | 0.0339 (2) | −0.00402 (18) | 0.01772 (18) | −0.01094 (18) |
| S3 | 0.0382 (2) | 0.0629 (3) | 0.0380 (2) | −0.00095 (19) | 0.01655 (19) | −0.0126 (2) |
| O1 | 0.0637 (8) | 0.0455 (7) | 0.0407 (6) | −0.0137 (6) | 0.0231 (6) | −0.0044 (5) |
| O2 | 0.0509 (7) | 0.0515 (7) | 0.0396 (6) | −0.0110 (6) | 0.0254 (5) | −0.0085 (5) |
| O3 | 0.0501 (7) | 0.0375 (7) | 0.0386 (6) | −0.0082 (5) | 0.0140 (5) | 0.0010 (5) |
| O4 | 0.0501 (7) | 0.0431 (7) | 0.0375 (7) | 0.0021 (5) | 0.0079 (6) | 0.0026 (5) |
| C1 | 0.0384 (8) | 0.0397 (9) | 0.0386 (7) | −0.0071 (7) | 0.0197 (7) | −0.0083 (7) |
| C2 | 0.0368 (8) | 0.0488 (10) | 0.0438 (9) | −0.0072 (7) | 0.0217 (7) | −0.0121 (8) |
| C3 | 0.0413 (8) | 0.0358 (9) | 0.0351 (8) | −0.0033 (7) | 0.0195 (7) | −0.0046 (6) |
| C4 | 0.0327 (8) | 0.0432 (9) | 0.0411 (9) | −0.0018 (7) | 0.0186 (7) | −0.0047 (7) |
| C5 | 0.0592 (12) | 0.0519 (11) | 0.0653 (12) | −0.0185 (9) | 0.0363 (10) | −0.0126 (9) |
| C6 | 0.0375 (9) | 0.0708 (13) | 0.0572 (11) | −0.0017 (9) | 0.0192 (8) | −0.0141 (10) |
| C7 | 0.0369 (8) | 0.0361 (9) | 0.0369 (9) | 0.0004 (7) | 0.0183 (7) | −0.0014 (7) |
| C8 | 0.0770 (13) | 0.0376 (10) | 0.0559 (11) | −0.0077 (9) | 0.0342 (10) | −0.0017 (8) |
| C9 | 0.0470 (10) | 0.0541 (11) | 0.0478 (10) | −0.0012 (8) | 0.0268 (8) | −0.0115 (8) |
| S1—C1 | 1.6301 (16) | C3—C8 | 1.522 (2) |
| S2—C1 | 1.7460 (16) | C3—C9 | 1.544 (2) |
| S2—C3 | 1.8372 (16) | C5—H5A | 0.9600 |
| S3—C1 | 1.7484 (17) | C5—H5B | 0.9600 |
| S3—C2 | 1.8410 (16) | C5—H5C | 0.9600 |
| O1—C4 | 1.302 (2) | C6—H6A | 0.9600 |
| O1—H1 | 0.8200 | C6—H6B | 0.9600 |
| O2—C4 | 1.2268 (18) | C6—H6C | 0.9600 |
| O3—C7 | 1.3037 (19) | C8—H8A | 0.9600 |
| O3—H3 | 0.8200 | C8—H8B | 0.9600 |
| O4—C7 | 1.2238 (18) | C8—H8C | 0.9600 |
| C2—C5 | 1.520 (3) | C9—H9A | 0.9600 |
| C2—C4 | 1.523 (2) | C9—H9B | 0.9600 |
| C2—C6 | 1.546 (2) | C9—H9C | 0.9600 |
| C3—C7 | 1.520 (2) | ||
| C1—S2—C3 | 106.51 (7) | C2—C5—H5C | 109.5 |
| C1—S3—C2 | 106.73 (7) | H5A—C5—H5C | 109.5 |
| C4—O1—H1 | 109.5 | H5B—C5—H5C | 109.5 |
| C7—O3—H3 | 109.5 | C2—C6—H6A | 109.5 |
| S1—C1—S2 | 126.75 (10) | C2—C6—H6B | 109.5 |
| S1—C1—S3 | 126.32 (9) | H6A—C6—H6B | 109.5 |
| S2—C1—S3 | 106.90 (9) | C2—C6—H6C | 109.5 |
| C5—C2—C4 | 111.58 (14) | H6A—C6—H6C | 109.5 |
| C5—C2—C6 | 111.21 (15) | H6B—C6—H6C | 109.5 |
| C4—C2—C6 | 106.77 (14) | O4—C7—O3 | 123.42 (15) |
| C5—C2—S3 | 111.67 (12) | O4—C7—C3 | 121.41 (15) |
| C4—C2—S3 | 112.10 (11) | O3—C7—C3 | 114.91 (13) |
| C6—C2—S3 | 103.10 (11) | C3—C8—H8A | 109.5 |
| C7—C3—C8 | 111.77 (14) | C3—C8—H8B | 109.5 |
| C7—C3—C9 | 107.43 (13) | H8A—C8—H8B | 109.5 |
| C8—C3—C9 | 110.50 (14) | C3—C8—H8C | 109.5 |
| C7—C3—S2 | 112.54 (11) | H8A—C8—H8C | 109.5 |
| C8—C3—S2 | 110.85 (12) | H8B—C8—H8C | 109.5 |
| C9—C3—S2 | 103.37 (11) | C3—C9—H9A | 109.5 |
| O2—C4—O1 | 123.69 (15) | C3—C9—H9B | 109.5 |
| O2—C4—C2 | 120.97 (15) | H9A—C9—H9B | 109.5 |
| O1—C4—C2 | 115.13 (13) | C3—C9—H9C | 109.5 |
| C2—C5—H5A | 109.5 | H9A—C9—H9C | 109.5 |
| C2—C5—H5B | 109.5 | H9B—C9—H9C | 109.5 |
| H5A—C5—H5B | 109.5 | ||
| S1—S1—C1—S2 | 0.00 (2) | C1—S2—C3—C9 | 170.36 (11) |
| S1—S1—C1—S3 | 0.00 (5) | C5—C2—C4—O2 | 13.2 (2) |
| C3—S2—C1—S1 | −7.38 (14) | C6—C2—C4—O2 | −108.50 (17) |
| C3—S2—C1—S1 | −7.38 (14) | S3—C2—C4—O2 | 139.30 (13) |
| C3—S2—C1—S3 | 174.63 (8) | C5—C2—C4—O1 | −171.90 (14) |
| C2—S3—C1—S1 | 10.52 (14) | C6—C2—C4—O1 | 66.40 (17) |
| C2—S3—C1—S1 | 10.52 (14) | S3—C2—C4—O1 | −45.80 (17) |
| C2—S3—C1—S2 | −171.47 (8) | C8—C3—C7—O4 | −15.6 (2) |
| C1—S3—C2—C5 | 68.46 (14) | C9—C3—C7—O4 | 105.74 (17) |
| C1—S3—C2—C4 | −57.59 (14) | S2—C3—C7—O4 | −141.14 (13) |
| C1—S3—C2—C6 | −172.07 (12) | C8—C3—C7—O3 | 170.06 (14) |
| C1—S2—C3—C7 | 54.77 (13) | C9—C3—C7—O3 | −68.56 (18) |
| C1—S2—C3—C8 | −71.23 (13) | S2—C3—C7—O3 | 44.56 (16) |
| H··· | ||||
| C8—H8 | 0.96 | 2.85 | 3.506 (2) | 127 |
| C5—H5 | 0.96 | 2.83 | 3.4955 (19) | 127 |
| O1—H1···O4i | 0.82 | 1.84 | 2.6549 (17) | 178 |
| O3—H3···O2i | 0.82 | 1.81 | 2.6321 (15) | 178 |
| C6—H6 | 0.96 | 2.69 | 3.518 (2) | 144 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C8—H8 | 0.96 | 2.85 | 3.506 (2) | 127 |
| C5—H5 | 0.96 | 2.83 | 3.4955 (19) | 127 |
| O1—H1⋯O4i | 0.82 | 1.84 | 2.6549 (17) | 178 |
| O3—H3⋯O2i | 0.82 | 1.81 | 2.6321 (15) | 178 |
| C6—H6 | 0.96 | 2.69 | 3.518 (2) | 144 |
Symmetry codes: (i) ; (ii) .