| Literature DB >> 23723916 |
María González1, Andrea Martínez, Marcos L Rivadulla, Maria J Matos.
Abstract
The title compound, C9H12O5, is a bicyclic lactone, presenting a 2,6-dioxabi-cyclo-[3.3.0]octan-3-one skeleton, which was obtained through an intra-molecular lactonization. The bicyclic lactone presents a cis ring-junction and a 1,5-trans-substituted tetra-hydro-furan. Both five-membered rings are in twisted envelope conformations with one of the fused C atoms as the flap. The dihedral angle between the mean planes of the bicyclic lactone residue, defined by the di-hydro-furan-2(3H)-one and the tetra-hydro-furan rings, is 69.5 (2)°. The atoms of the ester chain are coplanar [maximum deviation = 0.013 (2) Å]. The absolute structure was not determined.Entities:
Year: 2013 PMID: 23723916 PMCID: PMC3648296 DOI: 10.1107/S1600536813010313
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H12O5 | |
| Melting point: 360.15(4) K | |
| Monoclinic, | Mo |
| Cell parameters from 1040 reflections | |
| θ = 2.4–24.1° | |
| µ = 0.12 mm−1 | |
| β = 109.755 (7)° | |
| Needle, colourless | |
| 0.49 × 0.11 × 0.10 mm | |
| Bruker APEXII CCD diffractometer | 1530 independent reflections |
| Radiation source: fine-focus sealed tube | 1313 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 25.1°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 2551 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1530 reflections | (Δ/σ)max < 0.001 |
| 128 parameters | Δρmax = 0.14 e Å−3 |
| 1 restraint | Δρmin = −0.16 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.3092 (3) | 0.6053 (7) | 0.9619 (3) | 0.0455 (7) | |
| H1 | 0.3648 | 0.4273 | 0.9825 | 0.055* | |
| O2 | 0.38327 (19) | 0.8441 (5) | 1.04241 (19) | 0.0546 (6) | |
| C3 | 0.3280 (3) | 0.9021 (7) | 1.1363 (3) | 0.0518 (8) | |
| O3 | 0.3786 (3) | 1.0867 (6) | 1.2155 (2) | 0.0788 (7) | |
| C4 | 0.2033 (3) | 0.7134 (8) | 1.1221 (2) | 0.0522 (8) | |
| H4A | 0.1233 | 0.8252 | 1.1265 | 0.063* | |
| H4B | 0.2263 | 0.5674 | 1.1896 | 0.063* | |
| O6 | 0.07106 (19) | 0.7479 (6) | 0.89421 (18) | 0.0656 (7) | |
| C5 | 0.1713 (3) | 0.5796 (7) | 0.9901 (3) | 0.0459 (7) | |
| H5 | 0.1407 | 0.3790 | 0.9887 | 0.055* | |
| C7 | 0.1203 (3) | 0.8206 (7) | 0.7894 (3) | 0.0452 (7) | |
| H7 | 0.1309 | 1.0299 | 0.7865 | 0.054* | |
| C8 | 0.2656 (3) | 0.6782 (8) | 0.8200 (3) | 0.0530 (8) | |
| H8A | 0.2589 | 0.5060 | 0.7679 | 0.064* | |
| H8B | 0.3329 | 0.8095 | 0.8034 | 0.064* | |
| C1' | 0.0167 (3) | 0.7196 (8) | 0.6629 (3) | 0.0487 (7) | |
| H1A | 0.0550 | 0.7489 | 0.5932 | 0.058* | |
| H1B | −0.0025 | 0.5161 | 0.6677 | 0.058* | |
| O2' | −0.1124 (2) | 0.8846 (5) | 0.63829 (18) | 0.0533 (5) | |
| C3' | −0.2165 (3) | 0.8315 (7) | 0.5261 (3) | 0.0504 (7) | |
| O3' | −0.2036 (3) | 0.6670 (6) | 0.4477 (2) | 0.0807 (8) | |
| C4' | −0.3452 (3) | 1.0036 (8) | 0.5127 (3) | 0.0659 (10) | |
| H4E | −0.3893 | 0.9331 | 0.5725 | 0.099* | |
| H4D | −0.4104 | 0.9876 | 0.4252 | 0.099* | |
| H4C | −0.3192 | 1.2017 | 0.5318 | 0.099* |
| C1 | 0.0348 (13) | 0.0492 (18) | 0.0516 (16) | 0.0035 (14) | 0.0136 (12) | 0.0035 (14) |
| O2 | 0.0410 (10) | 0.0622 (14) | 0.0599 (12) | −0.0120 (11) | 0.0162 (9) | −0.0041 (11) |
| C3 | 0.0467 (17) | 0.057 (2) | 0.0405 (16) | 0.0046 (16) | 0.0004 (13) | 0.0065 (15) |
| O3 | 0.0824 (16) | 0.0760 (18) | 0.0616 (14) | −0.0014 (15) | 0.0029 (12) | −0.0152 (14) |
| C4 | 0.0471 (16) | 0.067 (2) | 0.0430 (15) | 0.0067 (15) | 0.0164 (12) | 0.0106 (14) |
| O6 | 0.0410 (11) | 0.116 (2) | 0.0426 (11) | 0.0232 (12) | 0.0172 (9) | 0.0155 (12) |
| C5 | 0.0432 (15) | 0.0489 (17) | 0.0472 (15) | −0.0005 (14) | 0.0173 (12) | 0.0039 (14) |
| C7 | 0.0463 (15) | 0.0496 (19) | 0.0414 (14) | −0.0019 (14) | 0.0173 (12) | −0.0020 (14) |
| C8 | 0.0455 (16) | 0.067 (2) | 0.0514 (17) | 0.0022 (15) | 0.0227 (13) | −0.0015 (15) |
| C1' | 0.0545 (17) | 0.0462 (16) | 0.0460 (15) | 0.0030 (15) | 0.0179 (13) | −0.0009 (14) |
| O2' | 0.0481 (11) | 0.0631 (14) | 0.0418 (11) | 0.0103 (11) | 0.0062 (9) | −0.0075 (10) |
| C3' | 0.0558 (17) | 0.0529 (19) | 0.0402 (16) | −0.0051 (15) | 0.0131 (14) | 0.0017 (15) |
| O3' | 0.0845 (17) | 0.088 (2) | 0.0559 (13) | 0.0072 (14) | 0.0055 (12) | −0.0251 (15) |
| C4' | 0.0491 (18) | 0.084 (3) | 0.054 (2) | 0.0063 (16) | 0.0039 (15) | 0.0061 (17) |
| C1—O2 | 1.453 (3) | C7—C8 | 1.530 (4) |
| C1—C8 | 1.498 (4) | C7—H7 | 0.9800 |
| C1—C5 | 1.518 (4) | C8—H8A | 0.9700 |
| C1—H1 | 0.9800 | C8—H8B | 0.9700 |
| O2—C3 | 1.345 (4) | C1'—O2' | 1.448 (3) |
| C3—O3 | 1.201 (4) | C1'—H1A | 0.9700 |
| C3—C4 | 1.490 (4) | C1'—H1B | 0.9700 |
| C4—C5 | 1.500 (4) | O2'—C3' | 1.335 (3) |
| C4—H4A | 0.9700 | C3'—O3' | 1.186 (4) |
| C4—H4B | 0.9700 | C3'—C4' | 1.481 (4) |
| O6—C5 | 1.415 (3) | C4'—H4E | 0.9600 |
| O6—C7 | 1.430 (3) | C4'—H4D | 0.9600 |
| C5—H5 | 0.9800 | C4'—H4C | 0.9600 |
| C7—C1' | 1.494 (4) | ||
| O2—C1—C8 | 111.3 (2) | O6—C7—H7 | 109.3 |
| O2—C1—C5 | 104.6 (2) | C1'—C7—H7 | 109.3 |
| C8—C1—C5 | 105.0 (2) | C8—C7—H7 | 109.3 |
| O2—C1—H1 | 111.8 | C1—C8—C7 | 104.3 (2) |
| C8—C1—H1 | 111.8 | C1—C8—H8A | 110.9 |
| C5—C1—H1 | 111.8 | C7—C8—H8A | 110.9 |
| C3—O2—C1 | 110.8 (2) | C1—C8—H8B | 110.9 |
| O3—C3—O2 | 120.5 (3) | C7—C8—H8B | 110.9 |
| O3—C3—C4 | 129.1 (3) | H8A—C8—H8B | 108.9 |
| O2—C3—C4 | 110.4 (3) | O2'—C1'—C7 | 107.6 (2) |
| C3—C4—C5 | 104.1 (2) | O2'—C1'—H1A | 110.2 |
| C3—C4—H4A | 110.9 | C7—C1'—H1A | 110.2 |
| C5—C4—H4A | 110.9 | O2'—C1'—H1B | 110.2 |
| C3—C4—H4B | 110.9 | C7—C1'—H1B | 110.2 |
| C5—C4—H4B | 110.9 | H1A—C1'—H1B | 108.5 |
| H4A—C4—H4B | 109.0 | C3'—O2'—C1' | 116.4 (2) |
| C5—O6—C7 | 111.7 (2) | O3'—C3'—O2' | 122.5 (3) |
| O6—C5—C4 | 110.4 (3) | O3'—C3'—C4' | 125.4 (3) |
| O6—C5—C1 | 105.9 (2) | O2'—C3'—C4' | 112.0 (3) |
| C4—C5—C1 | 104.3 (2) | C3'—C4'—H4E | 109.5 |
| O6—C5—H5 | 111.9 | C3'—C4'—H4D | 109.5 |
| C4—C5—H5 | 111.9 | H4E—C4'—H4D | 109.5 |
| C1—C5—H5 | 111.9 | C3'—C4'—H4C | 109.5 |
| O6—C7—C1' | 110.1 (2) | H4E—C4'—H4C | 109.5 |
| O6—C7—C8 | 106.5 (2) | H4D—C4'—H4C | 109.5 |
| C1'—C7—C8 | 112.2 (2) | ||
| C8—C1—O2—C3 | 130.1 (2) | C8—C1—C5—C4 | −141.0 (3) |
| C5—C1—O2—C3 | 17.2 (3) | C5—O6—C7—C1' | 123.3 (3) |
| C1—O2—C3—O3 | 177.4 (3) | C5—O6—C7—C8 | 1.4 (4) |
| C1—O2—C3—C4 | −3.3 (3) | O2—C1—C8—C7 | −87.8 (3) |
| O3—C3—C4—C5 | 167.1 (3) | C5—C1—C8—C7 | 24.8 (3) |
| O2—C3—C4—C5 | −12.1 (3) | O6—C7—C8—C1 | −16.7 (3) |
| C7—O6—C5—C4 | 126.7 (3) | C1'—C7—C8—C1 | −137.3 (3) |
| C7—O6—C5—C1 | 14.4 (3) | O6—C7—C1'—O2' | 66.4 (3) |
| C3—C4—C5—O6 | −91.7 (3) | C8—C7—C1'—O2' | −175.2 (2) |
| C3—C4—C5—C1 | 21.6 (3) | C7—C1'—O2'—C3' | 177.6 (2) |
| O2—C1—C5—O6 | 92.8 (3) | C1'—O2'—C3'—O3' | −2.9 (4) |
| C8—C1—C5—O6 | −24.5 (3) | C1'—O2'—C3'—C4' | 178.0 (3) |
| O2—C1—C5—C4 | −23.7 (3) |