Literature DB >> 23723916

[(2S,3aR,6aR)-5-Oxohexa-hydro-furo[3,2-b]furan-2-yl]methyl acetate.

María González1, Andrea Martínez, Marcos L Rivadulla, Maria J Matos.   

Abstract

The title compound, C9H12O5, is a bicyclic lactone, presenting a 2,6-dioxabi-cyclo-[3.3.0]octan-3-one skeleton, which was obtained through an intra-molecular lactonization. The bicyclic lactone presents a cis ring-junction and a 1,5-trans-substituted tetra-hydro-furan. Both five-membered rings are in twisted envelope conformations with one of the fused C atoms as the flap. The dihedral angle between the mean planes of the bicyclic lactone residue, defined by the di-hydro-furan-2(3H)-one and the tetra-hydro-furan rings, is 69.5 (2)°. The atoms of the ester chain are coplanar [maximum deviation = 0.013 (2) Å]. The absolute structure was not determined.

Entities:  

Year:  2013        PMID: 23723916      PMCID: PMC3648296          DOI: 10.1107/S1600536813010313

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the stereoselective synthesis, applications and structures of related 2,6-dioxabi­cyclo­[3.3.0]octan-3-ones, see: Agrawal et al. (2006 ▶); Banda & Chakravarthy (2006 ▶); Paddon-Jones et al. (2001 ▶). For the biological activity of target compounds, see: Hayes et al. (2003 ▶). For the synthesis of chiral tetra­hydro­furans using l-malic acid, see: Álvarez et al. (2010 ▶). For pseudorotation parameters, see: Rao et al. (1981 ▶).

Experimental

Crystal data

C9H12O5 M = 200.19 Monoclinic, a = 10.015 (5) Å b = 4.647 (3) Å c = 10.904 (5) Å β = 109.755 (7)° V = 477.6 (4) Å3 Z = 2 Mo Kα radiation μ = 0.12 mm−1 T = 293 K 0.49 × 0.11 × 0.10 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008 ▶) T min = 0.602, T max = 0.745 2551 measured reflections 1530 independent reflections 1313 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.097 S = 1.07 1530 reflections 128 parameters 1 restraint H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813010313/go2086sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813010313/go2086Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813010313/go2086Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H12O5Dx = 1.392 Mg m3
Mr = 200.19Melting point: 360.15(4) K
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
a = 10.015 (5) ÅCell parameters from 1040 reflections
b = 4.647 (3) Åθ = 2.4–24.1°
c = 10.904 (5) ŵ = 0.12 mm1
β = 109.755 (7)°T = 293 K
V = 477.6 (4) Å3Needle, colourless
Z = 20.49 × 0.11 × 0.10 mm
F(000) = 212
Bruker APEXII CCD diffractometer1530 independent reflections
Radiation source: fine-focus sealed tube1313 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.028
φ and ω scansθmax = 25.1°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008)h = −11→11
Tmin = 0.602, Tmax = 0.745k = −5→5
2551 measured reflectionsl = −13→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0377P)2 + 0.1292P] where P = (Fo2 + 2Fc2)/3
1530 reflections(Δ/σ)max < 0.001
128 parametersΔρmax = 0.14 e Å3
1 restraintΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.3092 (3)0.6053 (7)0.9619 (3)0.0455 (7)
H10.36480.42730.98250.055*
O20.38327 (19)0.8441 (5)1.04241 (19)0.0546 (6)
C30.3280 (3)0.9021 (7)1.1363 (3)0.0518 (8)
O30.3786 (3)1.0867 (6)1.2155 (2)0.0788 (7)
C40.2033 (3)0.7134 (8)1.1221 (2)0.0522 (8)
H4A0.12330.82521.12650.063*
H4B0.22630.56741.18960.063*
O60.07106 (19)0.7479 (6)0.89421 (18)0.0656 (7)
C50.1713 (3)0.5796 (7)0.9901 (3)0.0459 (7)
H50.14070.37900.98870.055*
C70.1203 (3)0.8206 (7)0.7894 (3)0.0452 (7)
H70.13091.02990.78650.054*
C80.2656 (3)0.6782 (8)0.8200 (3)0.0530 (8)
H8A0.25890.50600.76790.064*
H8B0.33290.80950.80340.064*
C1'0.0167 (3)0.7196 (8)0.6629 (3)0.0487 (7)
H1A0.05500.74890.59320.058*
H1B−0.00250.51610.66770.058*
O2'−0.1124 (2)0.8846 (5)0.63829 (18)0.0533 (5)
C3'−0.2165 (3)0.8315 (7)0.5261 (3)0.0504 (7)
O3'−0.2036 (3)0.6670 (6)0.4477 (2)0.0807 (8)
C4'−0.3452 (3)1.0036 (8)0.5127 (3)0.0659 (10)
H4E−0.38930.93310.57250.099*
H4D−0.41040.98760.42520.099*
H4C−0.31921.20170.53180.099*
U11U22U33U12U13U23
C10.0348 (13)0.0492 (18)0.0516 (16)0.0035 (14)0.0136 (12)0.0035 (14)
O20.0410 (10)0.0622 (14)0.0599 (12)−0.0120 (11)0.0162 (9)−0.0041 (11)
C30.0467 (17)0.057 (2)0.0405 (16)0.0046 (16)0.0004 (13)0.0065 (15)
O30.0824 (16)0.0760 (18)0.0616 (14)−0.0014 (15)0.0029 (12)−0.0152 (14)
C40.0471 (16)0.067 (2)0.0430 (15)0.0067 (15)0.0164 (12)0.0106 (14)
O60.0410 (11)0.116 (2)0.0426 (11)0.0232 (12)0.0172 (9)0.0155 (12)
C50.0432 (15)0.0489 (17)0.0472 (15)−0.0005 (14)0.0173 (12)0.0039 (14)
C70.0463 (15)0.0496 (19)0.0414 (14)−0.0019 (14)0.0173 (12)−0.0020 (14)
C80.0455 (16)0.067 (2)0.0514 (17)0.0022 (15)0.0227 (13)−0.0015 (15)
C1'0.0545 (17)0.0462 (16)0.0460 (15)0.0030 (15)0.0179 (13)−0.0009 (14)
O2'0.0481 (11)0.0631 (14)0.0418 (11)0.0103 (11)0.0062 (9)−0.0075 (10)
C3'0.0558 (17)0.0529 (19)0.0402 (16)−0.0051 (15)0.0131 (14)0.0017 (15)
O3'0.0845 (17)0.088 (2)0.0559 (13)0.0072 (14)0.0055 (12)−0.0251 (15)
C4'0.0491 (18)0.084 (3)0.054 (2)0.0063 (16)0.0039 (15)0.0061 (17)
C1—O21.453 (3)C7—C81.530 (4)
C1—C81.498 (4)C7—H70.9800
C1—C51.518 (4)C8—H8A0.9700
C1—H10.9800C8—H8B0.9700
O2—C31.345 (4)C1'—O2'1.448 (3)
C3—O31.201 (4)C1'—H1A0.9700
C3—C41.490 (4)C1'—H1B0.9700
C4—C51.500 (4)O2'—C3'1.335 (3)
C4—H4A0.9700C3'—O3'1.186 (4)
C4—H4B0.9700C3'—C4'1.481 (4)
O6—C51.415 (3)C4'—H4E0.9600
O6—C71.430 (3)C4'—H4D0.9600
C5—H50.9800C4'—H4C0.9600
C7—C1'1.494 (4)
O2—C1—C8111.3 (2)O6—C7—H7109.3
O2—C1—C5104.6 (2)C1'—C7—H7109.3
C8—C1—C5105.0 (2)C8—C7—H7109.3
O2—C1—H1111.8C1—C8—C7104.3 (2)
C8—C1—H1111.8C1—C8—H8A110.9
C5—C1—H1111.8C7—C8—H8A110.9
C3—O2—C1110.8 (2)C1—C8—H8B110.9
O3—C3—O2120.5 (3)C7—C8—H8B110.9
O3—C3—C4129.1 (3)H8A—C8—H8B108.9
O2—C3—C4110.4 (3)O2'—C1'—C7107.6 (2)
C3—C4—C5104.1 (2)O2'—C1'—H1A110.2
C3—C4—H4A110.9C7—C1'—H1A110.2
C5—C4—H4A110.9O2'—C1'—H1B110.2
C3—C4—H4B110.9C7—C1'—H1B110.2
C5—C4—H4B110.9H1A—C1'—H1B108.5
H4A—C4—H4B109.0C3'—O2'—C1'116.4 (2)
C5—O6—C7111.7 (2)O3'—C3'—O2'122.5 (3)
O6—C5—C4110.4 (3)O3'—C3'—C4'125.4 (3)
O6—C5—C1105.9 (2)O2'—C3'—C4'112.0 (3)
C4—C5—C1104.3 (2)C3'—C4'—H4E109.5
O6—C5—H5111.9C3'—C4'—H4D109.5
C4—C5—H5111.9H4E—C4'—H4D109.5
C1—C5—H5111.9C3'—C4'—H4C109.5
O6—C7—C1'110.1 (2)H4E—C4'—H4C109.5
O6—C7—C8106.5 (2)H4D—C4'—H4C109.5
C1'—C7—C8112.2 (2)
C8—C1—O2—C3130.1 (2)C8—C1—C5—C4−141.0 (3)
C5—C1—O2—C317.2 (3)C5—O6—C7—C1'123.3 (3)
C1—O2—C3—O3177.4 (3)C5—O6—C7—C81.4 (4)
C1—O2—C3—C4−3.3 (3)O2—C1—C8—C7−87.8 (3)
O3—C3—C4—C5167.1 (3)C5—C1—C8—C724.8 (3)
O2—C3—C4—C5−12.1 (3)O6—C7—C8—C1−16.7 (3)
C7—O6—C5—C4126.7 (3)C1'—C7—C8—C1−137.3 (3)
C7—O6—C5—C114.4 (3)O6—C7—C1'—O2'66.4 (3)
C3—C4—C5—O6−91.7 (3)C8—C7—C1'—O2'−175.2 (2)
C3—C4—C5—C121.6 (3)C7—C1'—O2'—C3'177.6 (2)
O2—C1—C5—O692.8 (3)C1'—O2'—C3'—O3'−2.9 (4)
C8—C1—C5—O6−24.5 (3)C1'—O2'—C3'—C4'178.0 (3)
O2—C1—C5—C4−23.7 (3)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and stereochemistry of some bicyclic gamma-lactones from parasitic wasps (Hymenoptera: Braconidae). Utility of hydrolytic kinetic resolution of epoxides and palladium(II)-catalyzed hydroxycyclization-carbonylation-lactonization of ene-diols.

Authors:  G C Paddon-Jones; C S McErlean; P Hayes; C J Moore; W A Konig; W Kitching
Journal:  J Org Chem       Date:  2001-11-02       Impact factor: 4.354

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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