Literature DB >> 23723914

14-Bromo-12-chloro-2,16-dioxa-penta-cyclo-[7.7.5.0(1,21).0(3,8).0(10,15)]henicosa-3(8),10,12,14-tetra-ene-7,20-dione.

Alan R Kennedy1, Mehmet Akkurt, Shaaban K Mohamed, Antar A Abdelhamid, Adel A E Marzouk.   

Abstract

In the title compound, C19H16BrClO4, both the fused xanthene rings and one of the cyclo-hexane rings adopt envelope conformations, while the other cyclo-hexane ring is in a chair conformation. In the crystal, mol-ecules are linked by C-H⋯O hydrogen bonds, forming infinite chains running along [10-1] incorporating R 2 (2)(16) ring motifs. In addition, C-H⋯π inter-actions and weak π-π stacking inter-actions [centroid-centroid distance = 3.768 (3) Å] help to consolidate the packing.

Entities:  

Year:  2013        PMID: 23723914      PMCID: PMC3648294          DOI: 10.1107/S1600536813010374

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For similar structures, see: Mohamed et al. (2012b ▶); Lu et al. (2011 ▶); Abdelhamid et al. (2011 ▶). For the bioactiviy of xanthenones, see: Mohamed et al. (2012a ▶); Gobbi et al. (2006 ▶); Na (2009 ▶). For ring conformations, see: Cremer and Pople (1975 ▶).

Experimental

Crystal data

C19H16BrClO4 M = 423.67 Monoclinic, a = 10.2741 (6) Å b = 10.2800 (6) Å c = 15.8581 (8) Å β = 102.073 (5)° V = 1637.85 (16) Å3 Z = 4 Mo Kα radiation μ = 2.70 mm−1 T = 123 K 0.25 × 0.20 × 0.18 mm

Data collection

Oxford Diffraction Xcalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.529, T max = 0.616 7243 measured reflections 3516 independent reflections 2547 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.134 S = 1.04 3516 reflections 226 parameters H-atom parameters constrained Δρmax = 0.79 e Å−3 Δρmin = −0.73 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813010374/hb7072sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813010374/hb7072Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813010374/hb7072Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H16BrClO4F(000) = 856
Mr = 423.67Dx = 1.718 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2011 reflections
a = 10.2741 (6) Åθ = 3.0–28.8°
b = 10.2800 (6) ŵ = 2.70 mm1
c = 15.8581 (8) ÅT = 123 K
β = 102.073 (5)°Block, colourless
V = 1637.85 (16) Å30.25 × 0.20 × 0.18 mm
Z = 4
Oxford Diffraction Xcalibur Eos diffractometer3516 independent reflections
Radiation source: Enhance (Mo) X-ray Source2547 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.042
Detector resolution: 16.0727 pixels mm-1θmax = 27.0°, θmin = 3.3°
ω scansh = −13→13
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −11→12
Tmin = 0.529, Tmax = 0.616l = −19→20
7243 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.134H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0456P)2 + 3.8105P] where P = (Fo2 + 2Fc2)/3
3516 reflections(Δ/σ)max < 0.001
226 parametersΔρmax = 0.79 e Å3
0 restraintsΔρmin = −0.73 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.83070 (5)0.65176 (6)0.51190 (3)0.0317 (2)
Cl10.48771 (12)0.24296 (11)0.40547 (8)0.0239 (4)
O10.5310 (3)0.6514 (3)0.1626 (2)0.0248 (11)
O20.4643 (3)0.9536 (3)0.37446 (19)0.0204 (10)
O30.1281 (3)0.6340 (4)0.3173 (2)0.0309 (12)
O40.6260 (3)0.7948 (3)0.3862 (2)0.0222 (10)
C10.6710 (4)0.5856 (5)0.4453 (3)0.0192 (14)
C20.6398 (5)0.4564 (5)0.4527 (3)0.0209 (16)
C30.5230 (5)0.4094 (4)0.4018 (3)0.0180 (14)
C40.4377 (5)0.4900 (5)0.3470 (3)0.0199 (16)
C50.4683 (5)0.6205 (4)0.3418 (3)0.0174 (14)
C60.5875 (4)0.6689 (4)0.3903 (3)0.0165 (14)
C70.5465 (4)0.8852 (5)0.3268 (3)0.0186 (14)
C80.6430 (5)0.9822 (5)0.3029 (3)0.0224 (16)
C90.7320 (5)0.9167 (5)0.2502 (3)0.0258 (17)
C100.6512 (5)0.8501 (5)0.1700 (3)0.0273 (17)
C110.5501 (5)0.7597 (5)0.1918 (3)0.0188 (14)
C120.4649 (4)0.8147 (4)0.2507 (3)0.0173 (12)
C130.3782 (4)0.7170 (5)0.2854 (3)0.0189 (14)
C140.2961 (4)0.7914 (5)0.3381 (3)0.0185 (14)
C150.1663 (5)0.7408 (5)0.3456 (3)0.0218 (14)
C160.0825 (5)0.8278 (5)0.3889 (3)0.0297 (17)
C170.1648 (5)0.9056 (5)0.4622 (3)0.0293 (17)
C180.2719 (5)0.9826 (5)0.4319 (3)0.0226 (16)
C190.3432 (5)0.9016 (5)0.3786 (3)0.0185 (14)
H20.697000.400900.491800.0250*
H40.357800.456100.312800.0240*
H8A0.698401.019700.355900.0270*
H8B0.593101.053900.269000.0270*
H9A0.788600.851300.286400.0310*
H9B0.791200.982600.232500.0310*
H10A0.606000.917000.129300.0320*
H10B0.712200.801000.140900.0320*
H120.403800.880200.216400.0210*
H130.318600.670800.236600.0220*
H16A0.017600.773900.411600.0360*
H16B0.031700.888400.345700.0360*
H17A0.106100.965800.485700.0350*
H17B0.206600.845800.509000.0350*
H18A0.231001.058200.397600.0270*
H18B0.336401.016000.482600.0270*
U11U22U33U12U13U23
Br10.0228 (3)0.0413 (4)0.0276 (3)−0.0031 (2)−0.0026 (2)0.0050 (3)
Cl10.0344 (7)0.0103 (6)0.0300 (6)−0.0019 (5)0.0134 (5)−0.0010 (5)
O10.0262 (19)0.026 (2)0.0228 (17)−0.0010 (16)0.0067 (14)−0.0059 (16)
O20.0222 (18)0.0182 (18)0.0219 (17)−0.0016 (14)0.0075 (14)−0.0044 (14)
O30.024 (2)0.034 (2)0.036 (2)−0.0078 (17)0.0092 (16)−0.0022 (18)
O40.0228 (18)0.0182 (18)0.0230 (17)−0.0041 (14)−0.0012 (14)0.0016 (14)
C10.014 (2)0.025 (3)0.020 (2)−0.002 (2)0.0066 (19)−0.001 (2)
C20.024 (3)0.024 (3)0.018 (2)0.009 (2)0.012 (2)0.004 (2)
C30.026 (3)0.008 (2)0.023 (2)0.0001 (19)0.012 (2)0.0006 (19)
C40.020 (3)0.020 (3)0.023 (2)−0.005 (2)0.012 (2)−0.005 (2)
C50.020 (2)0.019 (3)0.016 (2)0.0013 (19)0.0102 (19)−0.0002 (19)
C60.016 (2)0.018 (3)0.018 (2)−0.0022 (19)0.0096 (18)−0.003 (2)
C70.017 (2)0.016 (3)0.023 (2)−0.0007 (19)0.005 (2)0.001 (2)
C80.020 (3)0.022 (3)0.024 (2)−0.006 (2)0.002 (2)−0.004 (2)
C90.019 (3)0.031 (3)0.029 (3)−0.005 (2)0.009 (2)−0.002 (2)
C100.028 (3)0.028 (3)0.026 (3)−0.004 (2)0.006 (2)−0.002 (2)
C110.018 (2)0.023 (3)0.014 (2)0.004 (2)0.0001 (18)0.000 (2)
C120.019 (2)0.016 (2)0.017 (2)−0.0011 (19)0.0037 (18)0.0021 (19)
C130.020 (2)0.017 (3)0.019 (2)−0.002 (2)0.0026 (19)0.0011 (19)
C140.020 (2)0.023 (3)0.013 (2)0.005 (2)0.0043 (18)0.003 (2)
C150.017 (2)0.027 (3)0.020 (2)−0.002 (2)0.0009 (19)0.007 (2)
C160.015 (3)0.039 (3)0.037 (3)0.000 (2)0.010 (2)0.008 (3)
C170.031 (3)0.032 (3)0.028 (3)0.007 (2)0.013 (2)0.006 (2)
C180.024 (3)0.024 (3)0.022 (2)0.004 (2)0.010 (2)0.000 (2)
C190.018 (2)0.021 (3)0.017 (2)0.003 (2)0.0045 (19)0.005 (2)
Br1—C11.883 (5)C14—C151.459 (7)
Cl1—C31.753 (4)C14—C191.342 (7)
O1—C111.206 (6)C15—C161.503 (7)
O2—C71.430 (6)C16—C171.515 (7)
O2—C191.368 (6)C17—C181.513 (7)
O3—C151.220 (6)C18—C191.484 (7)
O4—C61.359 (5)C2—H20.9500
O4—C71.448 (6)C4—H40.9500
C1—C21.377 (7)C8—H8A0.9900
C1—C61.385 (6)C8—H8B0.9900
C2—C31.386 (7)C9—H9A0.9900
C3—C41.375 (7)C9—H9B0.9900
C4—C51.384 (7)C10—H10A0.9900
C5—C61.395 (7)C10—H10B0.9900
C5—C131.515 (7)C12—H121.0000
C7—C81.509 (7)C13—H131.0000
C7—C121.504 (6)C16—H16A0.9900
C8—C91.519 (7)C16—H16B0.9900
C9—C101.528 (7)C17—H17A0.9900
C10—C111.487 (7)C17—H17B0.9900
C11—C121.517 (7)C18—H18A0.9900
C12—C131.520 (6)C18—H18B0.9900
C13—C141.513 (7)
C7—O2—C19118.5 (4)O2—C19—C14123.2 (4)
C6—O4—C7120.8 (3)O2—C19—C18111.7 (4)
Br1—C1—C2119.5 (4)C14—C19—C18125.1 (5)
Br1—C1—C6118.8 (4)C1—C2—H2121.00
C2—C1—C6121.7 (4)C3—C2—H2121.00
C1—C2—C3118.4 (4)C3—C4—H4120.00
Cl1—C3—C2118.8 (4)C5—C4—H4120.00
Cl1—C3—C4120.0 (4)C7—C8—H8A110.00
C2—C3—C4121.2 (4)C7—C8—H8B110.00
C3—C4—C5119.9 (5)C9—C8—H8A110.00
C4—C5—C6119.8 (4)C9—C8—H8B110.00
C4—C5—C13123.5 (4)H8A—C8—H8B108.00
C6—C5—C13116.7 (4)C8—C9—H9A109.00
O4—C6—C1118.1 (4)C8—C9—H9B109.00
O4—C6—C5123.0 (4)C10—C9—H9A109.00
C1—C6—C5118.9 (4)C10—C9—H9B109.00
O2—C7—O4106.7 (3)H9A—C9—H9B108.00
O2—C7—C8107.4 (4)C9—C10—H10A109.00
O2—C7—C12111.7 (3)C9—C10—H10B109.00
O4—C7—C8106.1 (3)C11—C10—H10A109.00
O4—C7—C12110.9 (4)C11—C10—H10B109.00
C8—C7—C12113.7 (4)H10A—C10—H10B108.00
C7—C8—C9110.4 (4)C7—C12—H12107.00
C8—C9—C10111.8 (4)C11—C12—H12107.00
C9—C10—C11111.8 (4)C13—C12—H12107.00
O1—C11—C10123.6 (5)C5—C13—H13110.00
O1—C11—C12120.8 (4)C12—C13—H13110.00
C10—C11—C12115.6 (4)C14—C13—H13110.00
C7—C12—C11112.2 (4)C15—C16—H16A109.00
C7—C12—C13107.4 (4)C15—C16—H16B109.00
C11—C12—C13115.7 (4)C17—C16—H16A109.00
C5—C13—C12108.3 (4)C17—C16—H16B109.00
C5—C13—C14110.3 (4)H16A—C16—H16B108.00
C12—C13—C14107.6 (4)C16—C17—H17A109.00
C13—C14—C15119.3 (4)C16—C17—H17B109.00
C13—C14—C19120.3 (4)C18—C17—H17A109.00
C15—C14—C19120.4 (4)C18—C17—H17B109.00
O3—C15—C14121.3 (5)H17A—C17—H17B108.00
O3—C15—C16122.2 (5)C17—C18—H18A109.00
C14—C15—C16116.5 (4)C17—C18—H18B109.00
C15—C16—C17112.6 (4)C19—C18—H18A109.00
C16—C17—C18111.0 (4)C19—C18—H18B109.00
C17—C18—C19111.5 (4)H18A—C18—H18B108.00
C19—O2—C7—O4−88.4 (4)O4—C7—C12—C11−70.2 (5)
C19—O2—C7—C8158.3 (4)O4—C7—C12—C1358.0 (4)
C19—O2—C7—C1232.9 (5)C8—C7—C12—C1149.2 (5)
C7—O2—C19—C14−2.0 (7)C8—C7—C12—C13177.4 (4)
C7—O2—C19—C18178.7 (4)C7—C8—C9—C1055.9 (5)
C7—O4—C6—C1176.9 (4)C8—C9—C10—C11−53.0 (6)
C7—O4—C6—C5−3.2 (6)C9—C10—C11—O1−134.8 (5)
C6—O4—C7—O296.0 (4)C9—C10—C11—C1248.4 (6)
C6—O4—C7—C8−149.7 (4)O1—C11—C12—C7136.7 (5)
C6—O4—C7—C12−25.8 (5)O1—C11—C12—C1313.0 (6)
Br1—C1—C2—C3−178.8 (4)C10—C11—C12—C7−46.4 (5)
C6—C1—C2—C31.6 (7)C10—C11—C12—C13−170.0 (4)
Br1—C1—C6—O40.9 (6)C7—C12—C13—C5−62.3 (5)
Br1—C1—C6—C5−179.1 (3)C7—C12—C13—C1457.0 (4)
C2—C1—C6—O4−179.5 (4)C11—C12—C13—C563.8 (5)
C2—C1—C6—C50.5 (7)C11—C12—C13—C14−176.9 (4)
C1—C2—C3—Cl1175.9 (4)C5—C13—C14—C15−90.3 (5)
C1—C2—C3—C4−2.0 (7)C5—C13—C14—C1988.6 (6)
Cl1—C3—C4—C5−177.6 (4)C12—C13—C14—C15151.7 (4)
C2—C3—C4—C50.3 (8)C12—C13—C14—C19−29.4 (6)
C3—C4—C5—C61.9 (7)C13—C14—C15—O37.1 (7)
C3—C4—C5—C13−178.0 (4)C13—C14—C15—C16−172.2 (4)
C4—C5—C6—O4177.7 (4)C19—C14—C15—O3−171.9 (5)
C4—C5—C6—C1−2.3 (7)C19—C14—C15—C168.8 (7)
C13—C5—C6—O4−2.4 (7)C13—C14—C19—O20.7 (7)
C13—C5—C6—C1177.6 (4)C13—C14—C19—C18180.0 (4)
C4—C5—C13—C12−144.7 (5)C15—C14—C19—O2179.7 (4)
C4—C5—C13—C1497.8 (5)C15—C14—C19—C18−1.1 (8)
C6—C5—C13—C1235.4 (6)O3—C15—C16—C17144.8 (5)
C6—C5—C13—C14−82.2 (5)C14—C15—C16—C17−35.9 (6)
O2—C7—C8—C9−178.8 (4)C15—C16—C17—C1854.9 (6)
O4—C7—C8—C967.5 (5)C16—C17—C18—C19−46.2 (6)
C12—C7—C8—C9−54.7 (5)C17—C18—C19—O2−160.1 (4)
O2—C7—C12—C11171.0 (4)C17—C18—C19—C1420.5 (7)
O2—C7—C12—C13−60.8 (5)
D—H···AD—HH···AD···AD—H···A
C8—H8B···O3i0.992.533.407 (6)147
C9—H9B···Cg3ii0.992.893.731 (5)143
Table 1

Hydrogen-bond geometry (Å, °)

Cg3 is the centroid of the C1–C6 benzene ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C8—H8B⋯O3i 0.992.533.407 (6)147
C9—H9BCg3ii 0.992.893.731 (5)143

Symmetry codes: (i) ; (ii) .

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Authors:  Antar A Abdelhamid; Shaaban Kamel Mohamed; Mirze A Allahverdiyev; Atash V Gurbanov; Seik Weng Ng
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6.  2-Amino-4-(4-methyl-phen-yl)-5-oxo-5,6,7,8-tetra-hydro-4H-chromene-3-carbonitrile.

Authors:  Shaaban K Mohamed; Mehmet Akkurt; Muhammad N Tahir; Antar A Abdelhamid; Mustafa R Albayati
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