Literature DB >> 23723913

2,4-Bis(furan-2-yl)-1,5-dimethyl-3-aza-bicyclo-[3.3.1]nonan-9-one.

R Venkateswaramoorthi1, S Rizwana Begum, R Hema, K Krishnasamy, A G Anitha.   

Abstract

In the title compound, C18H21NO3, the bicyclic ring system adopts a twin-chair conformation. The two methyl groups attached to the bicycle are in an equatorial orientation for both rings. One of the furan rings is disordered over two orientations with an occupancy ratio of 0.686 (6):0.314 (6). In the crystal, very long N-H⋯O hydrogen bonds connect the mol-ecules into a chain perpendicular to the ac plane.

Entities:  

Year:  2013        PMID: 23723913      PMCID: PMC3648293          DOI: 10.1107/S1600536813010180

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and biological activity of 3-aza­bicyclo­[3.3.1] nonan-9-ones, see: Parthiban et al. (2009 ▶); Hardick et al. (1996 ▶); Jeyaraman & Avila (1981 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C18H21NO3 M = 299.36 Monoclinic, a = 21.268 (2) Å b = 6.7031 (9) Å c = 22.303 (2) Å β = 92.776 (6)° V = 3175.7 (6) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer 11487 measured reflections 2784 independent reflections 2127 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.130 S = 1.05 2784 reflections 252 parameters 220 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813010180/aa2083sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813010180/aa2083Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813010180/aa2083Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H21NO3F(000) = 1280
Mr = 299.36Dx = 1.252 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 11487 reflections
a = 21.268 (2) Åθ = 1.8–28.4°
b = 6.7031 (9) ŵ = 0.09 mm1
c = 22.303 (2) ÅT = 293 K
β = 92.776 (6)°Block, brown
V = 3175.7 (6) Å30.30 × 0.25 × 0.20 mm
Z = 8
Bruker SMART APEX CCD area-detector diffractometer2127 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.031
Graphite monochromatorθmax = 25.0°, θmin = 1.9°
ω scanh = −23→25
11487 measured reflectionsk = −5→7
2784 independent reflectionsl = −22→26
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.130w = 1/[σ2(Fo2) + (0.0637P)2 + 1.7182P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
2784 reflectionsΔρmax = 0.19 e Å3
252 parametersΔρmin = −0.20 e Å3
220 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0024 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
N10.17290 (7)0.0845 (3)0.13064 (7)0.0446 (4)
H10.1765 (10)0.215 (4)0.1368 (9)0.058 (6)*
C20.23315 (8)−0.0076 (3)0.15048 (8)0.0391 (4)
H20.23980.01980.19350.047*
C30.23109 (8)−0.2391 (3)0.14260 (8)0.0403 (4)
C40.21984 (10)−0.3083 (3)0.07672 (8)0.0506 (5)
H4A0.2530−0.25390.05320.061*
H4B0.2233−0.45260.07550.061*
C50.15671 (10)−0.2485 (3)0.04728 (9)0.0562 (6)
H5A0.1501−0.32090.00980.067*
H5B0.1573−0.10720.03800.067*
C60.10205 (10)−0.2917 (3)0.08770 (9)0.0544 (5)
H6A0.0942−0.43420.08730.065*
H6B0.0646−0.22670.07060.065*
C70.11233 (9)−0.2234 (3)0.15358 (8)0.0455 (5)
C80.17479 (9)−0.3139 (3)0.17506 (8)0.0444 (5)
C90.11855 (8)0.0068 (3)0.16110 (9)0.0461 (5)
H90.12590.03370.20410.055*
C100.29224 (10)−0.3283 (3)0.16918 (10)0.0595 (6)
H10A0.3007−0.27610.20880.089*
H10B0.3262−0.29410.14430.089*
H10C0.2883−0.47080.17110.089*
C110.05852 (10)−0.2986 (4)0.19039 (11)0.0701 (7)
H11A0.0591−0.44170.19140.105*
H11B0.0191−0.25370.17240.105*
H11C0.0635−0.24760.23060.105*
C210.28552 (8)0.0899 (3)0.11924 (8)0.0418 (4)
C220.34330 (9)0.1509 (3)0.13830 (10)0.0559 (5)
H220.36110.14050.17710.067*
C230.37202 (10)0.2347 (3)0.08755 (11)0.0627 (6)
H230.41220.28930.08690.075*
C240.33033 (10)0.2198 (3)0.04147 (11)0.0616 (6)
H240.33680.26370.00270.074*
O10.17859 (7)−0.4444 (3)0.21255 (7)0.0744 (5)
O20.27645 (6)0.1308 (2)0.05925 (6)0.0564 (4)
C910.0595 (4)0.114 (2)0.1410 (2)0.0532 (11)0.686 (6)
C920.0368 (2)0.1727 (7)0.0867 (2)0.0656 (11)0.686 (6)
H920.05610.16160.05030.079*0.686 (6)
C93−0.0247 (4)0.2576 (19)0.0973 (3)0.0883 (17)0.686 (6)
H93−0.05350.30890.06860.106*0.686 (6)
C94−0.03169 (18)0.2467 (7)0.1581 (3)0.0947 (15)0.686 (6)
H94−0.06670.29340.17720.114*0.686 (6)
O30.02057 (15)0.1562 (6)0.18791 (19)0.0811 (11)0.686 (6)
C91'0.0638 (9)0.116 (5)0.1303 (6)0.064 (2)0.314 (6)
C92'0.0621 (4)0.1568 (14)0.0708 (4)0.0480 (18)0.314 (6)
H92'0.09290.13180.04360.058*0.314 (6)
C93'0.0022 (4)0.2467 (14)0.0597 (5)0.082 (2)0.314 (6)
H93'−0.01370.28750.02210.098*0.314 (6)
C94'−0.0289 (9)0.265 (4)0.1116 (7)0.082 (2)0.314 (6)
H94'−0.06800.32450.11580.099*0.314 (6)
O3'0.0093 (4)0.1787 (15)0.1571 (5)0.094 (2)0.314 (6)
U11U22U33U12U13U23
N10.0369 (8)0.0346 (9)0.0622 (10)0.0025 (7)0.0027 (7)0.0001 (7)
C20.0388 (9)0.0386 (10)0.0398 (9)0.0028 (8)0.0001 (7)−0.0037 (8)
C30.0432 (10)0.0366 (10)0.0414 (10)0.0047 (8)0.0041 (8)0.0007 (8)
C40.0621 (12)0.0438 (11)0.0471 (11)−0.0023 (9)0.0137 (9)−0.0073 (9)
C50.0743 (14)0.0538 (13)0.0401 (10)−0.0032 (11)−0.0026 (10)−0.0072 (9)
C60.0555 (12)0.0462 (12)0.0607 (13)−0.0067 (9)−0.0071 (10)−0.0054 (9)
C70.0431 (10)0.0451 (11)0.0486 (11)−0.0034 (8)0.0069 (8)0.0035 (8)
C80.0551 (11)0.0418 (11)0.0365 (9)0.0000 (8)0.0039 (8)0.0026 (8)
C90.0386 (10)0.0501 (12)0.0499 (11)−0.0001 (9)0.0054 (8)−0.0064 (9)
C100.0556 (12)0.0497 (12)0.0733 (14)0.0126 (10)0.0026 (10)0.0093 (11)
C110.0558 (13)0.0720 (16)0.0838 (16)−0.0081 (11)0.0176 (12)0.0169 (13)
C210.0400 (10)0.0379 (10)0.0473 (10)0.0038 (8)0.0005 (8)−0.0019 (8)
C220.0410 (11)0.0607 (14)0.0654 (13)−0.0006 (9)−0.0031 (9)−0.0045 (11)
C230.0416 (11)0.0576 (14)0.0899 (17)−0.0072 (10)0.0141 (11)0.0002 (12)
C240.0550 (13)0.0567 (14)0.0746 (15)−0.0069 (10)0.0171 (11)0.0122 (11)
O10.0700 (10)0.0808 (12)0.0729 (10)0.0022 (8)0.0074 (8)0.0381 (9)
O20.0516 (8)0.0614 (10)0.0559 (9)−0.0083 (7)0.0004 (6)0.0124 (7)
C910.029 (2)0.045 (2)0.086 (3)0.0037 (18)0.0108 (19)−0.010 (3)
C920.038 (2)0.058 (2)0.098 (3)0.010 (2)−0.018 (2)0.007 (2)
C930.049 (3)0.076 (3)0.138 (4)0.009 (2)−0.016 (3)−0.005 (4)
C940.0333 (18)0.089 (3)0.162 (4)0.0174 (18)0.000 (2)−0.018 (3)
O30.0495 (16)0.090 (2)0.105 (3)0.0131 (13)0.0101 (16)−0.013 (2)
C91'0.042 (4)0.058 (4)0.092 (4)−0.003 (4)0.017 (4)−0.014 (4)
C92'0.025 (3)0.054 (3)0.064 (4)0.016 (3)−0.003 (3)0.004 (3)
C93'0.057 (4)0.073 (4)0.114 (5)0.004 (4)−0.021 (4)0.000 (4)
C94'0.043 (4)0.072 (4)0.130 (5)0.014 (4)−0.009 (4)−0.002 (5)
O3'0.066 (4)0.084 (3)0.133 (4)0.008 (3)0.009 (4)−0.007 (4)
N1—C91.464 (2)C11—H11A0.9600
N1—C21.471 (2)C11—H11B0.9600
N1—H10.89 (2)C11—H11C0.9600
C2—C211.493 (2)C21—C221.344 (3)
C2—C31.562 (3)C21—O21.370 (2)
C2—H20.9800C22—C231.427 (3)
C3—C81.514 (3)C22—H220.9300
C3—C101.525 (3)C23—C241.328 (3)
C3—C41.548 (3)C23—H230.9300
C4—C51.520 (3)C24—O21.368 (2)
C4—H4A0.9700C24—H240.9300
C4—H4B0.9700C91—C921.342 (5)
C5—C61.533 (3)C91—O31.393 (4)
C5—H5A0.9700C92—C931.455 (7)
C5—H5B0.9700C92—H920.9300
C6—C71.544 (3)C93—C941.373 (7)
C6—H6A0.9700C93—H930.9300
C6—H6B0.9700C94—O31.405 (5)
C7—C81.517 (3)C94—H940.9300
C7—C111.526 (3)C91'—C92'1.353 (8)
C7—C91.557 (3)C91'—O3'1.395 (8)
C8—O11.210 (2)C92'—C93'1.421 (7)
C9—C911.497 (4)C92'—H92'0.9300
C9—C91'1.512 (8)C93'—C94'1.366 (10)
C9—H90.9800C93'—H93'0.9300
C10—H10A0.9600C94'—O3'1.396 (9)
C10—H10B0.9600C94'—H94'0.9300
C10—H10C0.9600
C9—N1—C2114.00 (15)C3—C10—H10A109.5
C9—N1—H1110.0 (13)C3—C10—H10B109.5
C2—N1—H1107.4 (14)H10A—C10—H10B109.5
N1—C2—C21109.54 (15)C3—C10—H10C109.5
N1—C2—C3111.35 (14)H10A—C10—H10C109.5
C21—C2—C3113.59 (14)H10B—C10—H10C109.5
N1—C2—H2107.4C7—C11—H11A109.5
C21—C2—H2107.4C7—C11—H11B109.5
C3—C2—H2107.4H11A—C11—H11B109.5
C8—C3—C10111.32 (16)C7—C11—H11C109.5
C8—C3—C4105.37 (15)H11A—C11—H11C109.5
C10—C3—C4109.95 (16)H11B—C11—H11C109.5
C8—C3—C2107.08 (14)C22—C21—O2109.35 (17)
C10—C3—C2109.08 (15)C22—C21—C2132.61 (18)
C4—C3—C2113.99 (15)O2—C21—C2118.04 (15)
C5—C4—C3115.06 (16)C21—C22—C23106.79 (19)
C5—C4—H4A108.5C21—C22—H22126.6
C3—C4—H4A108.5C23—C22—H22126.6
C5—C4—H4B108.5C24—C23—C22106.79 (18)
C3—C4—H4B108.5C24—C23—H23126.6
H4A—C4—H4B107.5C22—C23—H23126.6
C4—C5—C6112.07 (17)C23—C24—O2110.22 (19)
C4—C5—H5A109.2C23—C24—H24124.9
C6—C5—H5A109.2O2—C24—H24124.9
C4—C5—H5B109.2C24—O2—C21106.86 (16)
C6—C5—H5B109.2C92—C91—O3114.7 (3)
H5A—C5—H5B107.9C92—C91—C9132.1 (4)
C5—C6—C7115.29 (16)O3—C91—C9113.2 (3)
C5—C6—H6A108.5C91—C92—C93104.8 (4)
C7—C6—H6A108.5C91—C92—H92127.6
C5—C6—H6B108.5C93—C92—H92127.6
C7—C6—H6B108.5C94—C93—C92106.3 (5)
H6A—C6—H6B107.5C94—C93—H93126.9
C8—C7—C11111.48 (16)C92—C93—H93126.9
C8—C7—C6105.26 (15)C93—C94—O3111.7 (5)
C11—C7—C6109.79 (17)C93—C94—H94124.2
C8—C7—C9107.09 (15)O3—C94—H94124.2
C11—C7—C9109.36 (17)C91—O3—C94102.6 (4)
C6—C7—C9113.80 (16)C92'—C91'—O3'112.1 (7)
O1—C8—C3122.80 (18)C92'—C91'—C9121.8 (8)
O1—C8—C7122.38 (17)O3'—C91'—C9126.1 (8)
C3—C8—C7114.66 (15)C91'—C92'—C93'103.8 (7)
N1—C9—C91111.1 (4)C91'—C92'—H92'128.1
N1—C9—C91'103.0 (10)C93'—C92'—H92'128.1
N1—C9—C7111.54 (15)C94'—C93'—C92'111.0 (10)
C91—C9—C7112.2 (6)C94'—C93'—H93'124.5
C91'—C9—C7111.8 (15)C92'—C93'—H93'124.5
N1—C9—H9107.2C93'—C94'—O3'106.8 (11)
C91—C9—H9107.2C93'—C94'—H94'126.6
C91'—C9—H9116.0O3'—C94'—H94'126.6
C7—C9—H9107.2C91'—O3'—C94'106.3 (9)
C9—N1—C2—C21−176.84 (14)C6—C7—C9—C91'53.2 (5)
C9—N1—C2—C356.7 (2)N1—C2—C21—C22137.4 (2)
N1—C2—C3—C8−54.15 (19)C3—C2—C21—C22−97.4 (2)
C21—C2—C3—C8−178.38 (14)N1—C2—C21—O2−42.4 (2)
N1—C2—C3—C10−174.73 (15)C3—C2—C21—O282.80 (19)
C21—C2—C3—C1061.0 (2)O2—C21—C22—C230.1 (2)
N1—C2—C3—C462.0 (2)C2—C21—C22—C23−179.75 (19)
C21—C2—C3—C4−62.3 (2)C21—C22—C23—C240.1 (3)
C8—C3—C4—C553.4 (2)C22—C23—C24—O2−0.2 (3)
C10—C3—C4—C5173.44 (17)C23—C24—O2—C210.3 (2)
C2—C3—C4—C5−63.7 (2)C22—C21—O2—C24−0.2 (2)
C3—C4—C5—C6−46.9 (2)C2—C21—O2—C24179.64 (16)
C4—C5—C6—C746.7 (2)N1—C9—C91—C9242.8 (16)
C5—C6—C7—C8−52.7 (2)C91'—C9—C91—C927 (11)
C5—C6—C7—C11−172.77 (18)C7—C9—C91—C92−82.9 (14)
C5—C6—C7—C964.3 (2)N1—C9—C91—O3−138.8 (8)
C10—C3—C8—O1−7.6 (3)C91'—C9—C91—O3−175 (13)
C4—C3—C8—O1111.5 (2)C7—C9—C91—O395.6 (10)
C2—C3—C8—O1−126.8 (2)O3—C91—C92—C93−2.0 (13)
C10—C3—C8—C7176.76 (16)C9—C91—C92—C93176.5 (14)
C4—C3—C8—C7−64.1 (2)C91—C92—C93—C941.9 (11)
C2—C3—C8—C757.6 (2)C92—C93—C94—O3−1.3 (10)
C11—C7—C8—O17.1 (3)C92—C91—O3—C941.2 (12)
C6—C7—C8—O1−111.9 (2)C9—C91—O3—C94−177.5 (8)
C9—C7—C8—O1126.7 (2)C93—C94—O3—C910.2 (10)
C11—C7—C8—C3−177.27 (17)N1—C9—C91'—C92'37 (3)
C6—C7—C8—C363.8 (2)C91—C9—C91'—C92'−177 (15)
C9—C7—C8—C3−57.7 (2)C7—C9—C91'—C92'−83 (3)
C2—N1—C9—C91177.1 (5)N1—C9—C91'—O3'−146 (3)
C2—N1—C9—C91'−176.8 (13)C91—C9—C91'—O3'0 (9)
C2—N1—C9—C7−56.8 (2)C7—C9—C91'—O3'95 (3)
C8—C7—C9—N154.4 (2)O3'—C91'—C92'—C93'−1 (3)
C11—C7—C9—N1175.29 (16)C9—C91'—C92'—C93'176 (3)
C6—C7—C9—N1−61.5 (2)C91'—C92'—C93'—C94'3 (2)
C8—C7—C9—C91179.8 (2)C92'—C93'—C94'—O3'−3 (3)
C11—C7—C9—C91−59.3 (3)C92'—C91'—O3'—C94'0 (3)
C6—C7—C9—C9163.9 (3)C9—C91'—O3'—C94'−178 (3)
C8—C7—C9—C91'169.1 (5)C93'—C94'—O3'—C91'2 (3)
C11—C7—C9—C91'−70.0 (5)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.89 (2)2.84 (2)3.647 (2)152.0 (13)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O1i 0.89 (2)2.84 (2)3.647 (2)152.0 (13)

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Nudicauline and elatine as potent norditerpenoid ligands at rat neuronal alpha-bungarotoxin binding sites: importance of the 2-(methylsuccinimido)benzoyl moiety for neuronal nicotinic acetylcholine receptor binding.

Authors:  D J Hardick; I S Blagbrough; G Cooper; B V Potter; T Critchley; S Wonnacott
Journal:  J Med Chem       Date:  1996-11-22       Impact factor: 7.446

3.  Synthesis, stereochemistry and antimicrobial studies of novel oxime ethers of aza/diazabicycles.

Authors:  Paramasivam Parthiban; Gopalakrishnan Aridoss; Paramasivam Rathika; Venkatachalam Ramkumar; Senthamaraikannan Kabilan
Journal:  Bioorg Med Chem Lett       Date:  2009-10-30       Impact factor: 2.823

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  1 in total

1.  2,4-Bis(4-fluoro-phen-yl)-1,5-dimethyl-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  S Rizwana Begum; R Hema; R Venkateswaramoorthi; K Krishnasamy; A G Anitha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-09-12
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.