Literature DB >> 23723883

(1R,2S,5R)-(-)-Menthyl (S)-2-(methoxy-carbonyl)-benzene-sulfinate.

Maria Altamura1, Antonio Guidi, Loic Jierry, Paola Paoli, Patrizia Rossi.   

Abstract

In the title chiral sulfinic acid ester, C18H26O4S, the cyclo-hexane ring of the menthyl fragment adopts a chair conformation. The mol-ecular shape is defined by the dihedral angle of 47.87 (8)° between the mean planes of the cyclo-hexane and benzene rings. In the crystal, mol-ecules related by the screw axis are connected into chains along [010] by weak Car-H⋯O=S contacts.

Entities:  

Year:  2013        PMID: 23723883      PMCID: PMC3648263          DOI: 10.1107/S1600536813009112

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound, see: Klunder & Sharpless (1987 ▶) and of chiral sulfoxides, see: Drabowicz et al. (1982 ▶); Solladié et al. (1987 ▶). For applications of menthol in synthetic chemistry, see Oertling et al. (2007 ▶). For structural studies of analogous chiral sulfinic acid esters, see: Mariz et al. (2010 ▶); Heinemann et al. (2007 ▶); Cherkaoui & Nicoud (1995 ▶).

Experimental

Crystal data

C18H26O4S M = 338.45 Monoclinic, a = 9.7918 (2) Å b = 9.3938 (2) Å c = 10.6998 (2) Å β = 112.176 (2)° V = 911.39 (3) Å3 Z = 2 Cu Kα radiation μ = 1.72 mm−1 T = 150 K 0.26 × 0.22 × 0.08 mm

Data collection

Oxford Diffraction Xcalibur PX diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006 ▶) T min = 0.660, T max = 0.872 4681 measured reflections 2354 independent reflections 2115 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.078 S = 1.07 2354 reflections 209 parameters 1 restraint H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.22 e Å−3 Absolute structure: Flack (1983 ▶), 767 Friedel pairs Flack parameter: 0.038 (18) Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2006 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: PARST (Nardelli, 1995 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813009112/yk2089sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813009112/yk2089Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813009112/yk2089Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H26O4SF(000) = 364
Mr = 338.45Dx = 1.233 Mg m3
Monoclinic, P21Cu Kα radiation, λ = 1.5418 Å
a = 9.7918 (2) ÅCell parameters from 3618 reflections
b = 9.3938 (2) Åθ = 4.5–64.6°
c = 10.6998 (2) ŵ = 1.72 mm1
β = 112.176 (2)°T = 150 K
V = 911.39 (3) Å3Platelet, colourless
Z = 20.26 × 0.22 × 0.08 mm
Oxford Diffraction Xcalibur PX diffractometer2354 independent reflections
Radiation source: Enhance (Cu) X-ray Source2115 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.021
Detector resolution: 8.1241 pixels mm-1θmax = 64.8°, θmin = 4.5°
ω scansh = −11→10
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006)k = −10→8
Tmin = 0.660, Tmax = 0.872l = −11→12
4681 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.031H-atom parameters constrained
wR(F2) = 0.078w = 1/[σ2(Fo2) + (0.0533P)2] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
2354 reflectionsΔρmax = 0.15 e Å3
209 parametersΔρmin = −0.22 e Å3
1 restraintAbsolute structure: Flack (1983), 767 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.038 (18)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.13357 (6)0.36878 (7)0.29567 (5)0.02816 (16)
O1−0.12928 (17)0.2413 (2)0.29271 (17)0.0370 (5)
O2−0.14622 (19)0.0826 (2)0.44178 (18)0.0456 (5)
O30.10664 (16)0.26365 (17)0.16750 (14)0.0276 (4)
O40.27015 (18)0.4479 (2)0.31899 (17)0.0393 (5)
C10.1889 (2)0.2232 (3)0.4157 (2)0.0276 (6)
C20.0910 (3)0.1423 (3)0.4543 (2)0.0278 (5)
C30.1479 (3)0.0401 (3)0.5550 (2)0.0351 (6)
H30.0830−0.01300.58440.042*
C40.2987 (3)0.0150 (3)0.6128 (2)0.0401 (7)
H40.3364−0.05560.68080.048*
C50.3939 (3)0.0927 (3)0.5715 (2)0.0417 (7)
H50.49690.07410.60960.050*
C60.3395 (3)0.1976 (3)0.4747 (2)0.0350 (6)
H60.40560.25260.44840.042*
C7−0.0714 (2)0.1625 (3)0.3865 (2)0.0288 (5)
C8−0.3054 (3)0.0939 (4)0.3802 (3)0.0586 (9)
H8A−0.35010.02790.42480.088*
H8B−0.33860.07000.28420.088*
H8C−0.33530.19150.39010.088*
C90.0431 (2)0.3366 (2)0.03670 (19)0.0252 (5)
H90.07070.43960.04960.030*
C100.1105 (3)0.2704 (3)−0.0566 (2)0.0322 (6)
H100.08190.1676−0.06600.039*
C110.0369 (3)0.3372 (3)−0.1967 (2)0.0404 (7)
H11A0.06420.4391−0.19200.048*
H11B0.07420.2898−0.26020.048*
C12−0.1312 (3)0.3239 (3)−0.2505 (2)0.0439 (7)
H12A−0.17400.3709−0.33970.053*
H12B−0.15880.2220−0.26280.053*
C13−0.1943 (3)0.3903 (3)−0.1564 (2)0.0377 (7)
H13−0.16910.4939−0.14860.045*
C14−0.1233 (2)0.3239 (3)−0.0165 (2)0.0333 (6)
H14A−0.16090.37210.04640.040*
H14B−0.15110.2222−0.02100.040*
C15−0.3628 (3)0.3767 (5)−0.2088 (3)0.0574 (8)
H15A−0.39920.4212−0.14450.086*
H15B−0.39030.2757−0.21880.086*
H15C−0.40670.4242−0.29640.086*
C160.2812 (3)0.2752 (3)0.0022 (3)0.0397 (7)
H160.31510.22840.09280.048*
C170.3439 (3)0.4256 (3)0.0237 (3)0.0487 (8)
H17A0.30200.47960.07910.073*
H17B0.31880.4728−0.06390.073*
H17C0.45140.42140.06970.073*
C180.3433 (4)0.1894 (4)−0.0842 (3)0.0599 (9)
H18A0.30170.0932−0.09700.090*
H18B0.45090.1839−0.03930.090*
H18C0.31760.2358−0.17220.090*
U11U22U33U12U13U23
S10.0300 (3)0.0257 (3)0.0306 (3)−0.0036 (3)0.0135 (2)−0.0045 (3)
O10.0298 (9)0.0443 (12)0.0374 (9)0.0010 (8)0.0133 (8)0.0100 (9)
O20.0312 (9)0.0591 (14)0.0451 (10)−0.0078 (9)0.0127 (9)0.0180 (10)
O30.0333 (8)0.0240 (9)0.0245 (8)0.0019 (7)0.0099 (7)−0.0007 (7)
O40.0361 (9)0.0407 (11)0.0410 (9)−0.0146 (9)0.0144 (8)−0.0045 (9)
C10.0289 (12)0.0302 (15)0.0209 (11)−0.0024 (11)0.0065 (10)−0.0045 (10)
C20.0302 (12)0.0306 (15)0.0225 (11)0.0002 (11)0.0097 (9)−0.0035 (10)
C30.0395 (14)0.0363 (16)0.0276 (12)−0.0029 (12)0.0104 (12)−0.0004 (12)
C40.0456 (16)0.0387 (18)0.0291 (13)0.0101 (13)0.0062 (13)0.0005 (12)
C50.0318 (14)0.0530 (19)0.0331 (13)0.0105 (13)0.0040 (12)−0.0082 (14)
C60.0303 (13)0.0414 (17)0.0332 (13)0.0015 (12)0.0119 (11)−0.0065 (12)
C70.0310 (13)0.0292 (15)0.0279 (12)−0.0023 (11)0.0131 (11)−0.0033 (12)
C80.0299 (14)0.083 (3)0.0579 (18)−0.0111 (16)0.0109 (14)0.0230 (18)
C90.0300 (11)0.0190 (15)0.0264 (11)−0.0018 (10)0.0102 (9)0.0021 (10)
C100.0383 (13)0.0275 (15)0.0333 (12)−0.0012 (12)0.0163 (11)0.0009 (11)
C110.0554 (16)0.038 (2)0.0332 (12)−0.0040 (13)0.0226 (12)0.0031 (12)
C120.0538 (16)0.0390 (18)0.0301 (12)−0.0056 (13)0.0058 (11)0.0043 (12)
C130.0370 (13)0.0301 (18)0.0368 (12)−0.0022 (12)0.0034 (11)0.0035 (13)
C140.0284 (12)0.0338 (17)0.0352 (12)−0.0003 (11)0.0092 (10)0.0000 (11)
C150.0369 (13)0.068 (2)0.0492 (15)−0.0022 (17)−0.0037 (12)0.0096 (18)
C160.0421 (15)0.0395 (18)0.0469 (15)0.0020 (13)0.0275 (12)0.0043 (14)
C170.0396 (15)0.053 (2)0.0575 (18)−0.0113 (14)0.0229 (14)−0.0056 (15)
C180.065 (2)0.056 (2)0.076 (2)0.0083 (18)0.0462 (17)−0.0065 (19)
S1—O41.4669 (17)C10—C161.548 (3)
S1—O31.6287 (16)C10—H101.0000
S1—C11.813 (2)C11—C121.530 (3)
O1—C71.203 (3)C11—H11A0.9900
O2—C71.333 (3)C11—H11B0.9900
O2—C81.449 (3)C12—C131.501 (4)
O3—C91.469 (2)C12—H12A0.9900
C1—C61.388 (3)C12—H12B0.9900
C1—C21.403 (3)C13—C141.525 (3)
C2—C31.392 (4)C13—C151.535 (3)
C2—C71.490 (3)C13—H131.0000
C3—C41.389 (4)C14—H14A0.9900
C3—H30.9500C14—H14B0.9900
C4—C51.382 (4)C15—H15A0.9800
C4—H40.9500C15—H15B0.9800
C5—C61.382 (4)C15—H15C0.9800
C5—H50.9500C16—C181.517 (4)
C6—H60.9500C16—C171.524 (4)
C8—H8A0.9800C16—H161.0000
C8—H8B0.9800C17—H17A0.9800
C8—H8C0.9800C17—H17B0.9800
C9—C141.514 (3)C17—H17C0.9800
C9—C101.522 (3)C18—H18A0.9800
C9—H91.0000C18—H18B0.9800
C10—C111.532 (3)C18—H18C0.9800
O4—S1—O3107.34 (9)C10—C11—H11A109.2
O4—S1—C1104.61 (10)C12—C11—H11B109.2
O3—S1—C192.81 (9)C10—C11—H11B109.2
C7—O2—C8115.7 (2)H11A—C11—H11B107.9
C9—O3—S1113.26 (13)C13—C12—C11111.8 (2)
C6—C1—C2119.9 (2)C13—C12—H12A109.3
C6—C1—S1115.80 (19)C11—C12—H12A109.3
C2—C1—S1124.25 (17)C13—C12—H12B109.3
C3—C2—C1118.9 (2)C11—C12—H12B109.3
C3—C2—C7120.4 (2)H12A—C12—H12B107.9
C1—C2—C7120.7 (2)C12—C13—C14109.7 (2)
C4—C3—C2120.6 (2)C12—C13—C15112.2 (2)
C4—C3—H3119.7C14—C13—C15110.7 (2)
C2—C3—H3119.7C12—C13—H13108.0
C5—C4—C3120.0 (3)C14—C13—H13108.0
C5—C4—H4120.0C15—C13—H13108.0
C3—C4—H4120.0C9—C14—C13111.34 (19)
C4—C5—C6120.0 (2)C9—C14—H14A109.4
C4—C5—H5120.0C13—C14—H14A109.4
C6—C5—H5120.0C9—C14—H14B109.4
C5—C6—C1120.5 (2)C13—C14—H14B109.4
C5—C6—H6119.8H14A—C14—H14B108.0
C1—C6—H6119.8C13—C15—H15A109.5
O1—C7—O2123.5 (2)C13—C15—H15B109.5
O1—C7—C2124.4 (2)H15A—C15—H15B109.5
O2—C7—C2112.1 (2)C13—C15—H15C109.5
O2—C8—H8A109.5H15A—C15—H15C109.5
O2—C8—H8B109.5H15B—C15—H15C109.5
H8A—C8—H8B109.5C18—C16—C17110.6 (2)
O2—C8—H8C109.5C18—C16—C10110.9 (2)
H8A—C8—H8C109.5C17—C16—C10113.6 (2)
H8B—C8—H8C109.5C18—C16—H16107.1
O3—C9—C14109.29 (17)C17—C16—H16107.1
O3—C9—C10107.54 (18)C10—C16—H16107.1
C14—C9—C10113.12 (18)C16—C17—H17A109.5
O3—C9—H9108.9C16—C17—H17B109.5
C14—C9—H9108.9H17A—C17—H17B109.5
C10—C9—H9108.9C16—C17—H17C109.5
C9—C10—C11108.34 (19)H17A—C17—H17C109.5
C9—C10—C16112.98 (19)H17B—C17—H17C109.5
C11—C10—C16115.0 (2)C16—C18—H18A109.5
C9—C10—H10106.7C16—C18—H18B109.5
C11—C10—H10106.7H18A—C18—H18B109.5
C16—C10—H10106.7C16—C18—H18C109.5
C12—C11—C10112.09 (19)H18A—C18—H18C109.5
C12—C11—H11A109.2H18B—C18—H18C109.5
D—H···AD—HH···AD···AD—H···A
C5—H5···O4i0.952.423.337 (3)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C5—H5⋯O4i 0.952.423.337 (3)161

Symmetry code: (i) .

  3 in total

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2.  Applications of menthol in synthetic chemistry.

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