Literature DB >> 23723857

N-[4-Acetyl-5-(4-fluoro-phen-yl)-4,5-di-hydro-1,3,4-thia-diazol-2-yl]acetamide.

H D Kavitha1, Sheetal B Marganakop, Ravindra R Kamble, K R Roopashree, H C Devarajegowda.   

Abstract

The title mol-ecule, C12H12FN3O2S, shows a short intra-molecular S⋯O contact of 2.682 (18) Å. The dihedral angle between the thia-diazole ring and the benzene ring is 86.82 (11)°. In the crystal, N-H⋯O and C-H⋯O hydrogen bonds generate an R 2 (1)(6) graph-set motif between adjacent mol-ecules. Pairs of futher C-H⋯O hydrogen bonds form inversion dimers with R 2 (2)(8) ring motifs. These combine to generate a three-dimensional network and stack the mol-ecules along the b axis.

Entities:  

Year:  2013        PMID: 23723857      PMCID: PMC3648237          DOI: 10.1107/S1600536813009367

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological applications of 1,3,4-thia­diazole derivatives, see: Matysiak & Opolski (2006 ▶); Kumar et al. (2012 ▶); Oruç et al. (2004 ▶); Kadi et al. (2007 ▶); Noolvi et al. (2011 ▶); Matysiak et al. (2006 ▶); Marganakop et al. (2012 ▶). For a related structure, see: Zhang (2009 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C12H12FN3O2S M = 281.31 Monoclinic, a = 9.5061 (6) Å b = 11.2152 (7) Å c = 12.7752 (7) Å β = 101.823 (4)° V = 1333.11 (14) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 296 K 0.24 × 0.20 × 0.12 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.770, T max = 1.000 11372 measured reflections 2352 independent reflections 2035 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.121 S = 1.07 2352 reflections 172 parameters H-atom parameters constrained Δρmax = 0.42 e Å−3 Δρmin = −0.34 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813009367/sj5314sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813009367/sj5314Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813009367/sj5314Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12FN3O2SF(000) = 584
Mr = 281.31Dx = 1.402 Mg m3
Monoclinic, P21/cMelting point: 490 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 9.5061 (6) ÅCell parameters from 2352 reflections
b = 11.2152 (7) Åθ = 2.2–25.0°
c = 12.7752 (7) ŵ = 0.26 mm1
β = 101.823 (4)°T = 296 K
V = 1333.11 (14) Å3Plate, colourless
Z = 40.24 × 0.20 × 0.12 mm
Bruker SMART CCD area-detector diffractometer2352 independent reflections
Radiation source: fine-focus sealed tube2035 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
ω and φ scansθmax = 25.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)h = −11→11
Tmin = 0.770, Tmax = 1.000k = −13→12
11372 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0619P)2 + 0.7142P] where P = (Fo2 + 2Fc2)/3
2352 reflections(Δ/σ)max < 0.001
172 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.34 e Å3
Experimental. Spectroscopic data IR (KBr); 3233, 2799, 1646, 1626, 1H NMR (300 MHz, CDCl3, δ p.p.m.): 2.11 (s, 3H, CH3 of NHCOCH3), 2.24 (s, 3H, CH3 of –NCOCH3), 4.70 (s, 1H, C—H of C5—H), 6.85–7.10 (m, 4H, Ar—H), 11.77 (s, 1H, NHCO), MS (m/z, 70 eV); 282 (M+1, 20), 239 (26), 204 (100).
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F1−0.11204 (19)0.1673 (2)0.41894 (18)0.1026 (7)
S20.32591 (7)0.09255 (5)0.09191 (4)0.0449 (2)
O30.2686 (2)−0.01822 (15)−0.09810 (14)0.0665 (5)
O40.56411 (17)0.11842 (14)0.42490 (13)0.0472 (4)
N50.3591 (2)−0.14036 (15)0.03899 (13)0.0407 (4)
H50.3826−0.21270.05710.049*
N60.45429 (18)−0.08120 (15)0.21164 (13)0.0367 (4)
N70.46451 (18)0.01994 (15)0.27693 (14)0.0374 (4)
C80.0057 (3)0.1564 (3)0.3747 (2)0.0626 (7)
C90.0942 (3)0.2522 (2)0.3768 (2)0.0558 (6)
H90.07500.32390.40760.067*
C100.2141 (2)0.2394 (2)0.33124 (17)0.0441 (5)
H100.27680.30320.33210.053*
C110.2413 (2)0.13353 (19)0.28503 (16)0.0372 (5)
C120.1473 (3)0.0389 (2)0.2839 (2)0.0551 (6)
H120.1645−0.03270.25200.066*
C130.0287 (3)0.0497 (3)0.3296 (3)0.0677 (8)
H13−0.0340−0.01400.32970.081*
C140.3719 (2)0.12171 (18)0.23621 (16)0.0375 (5)
H140.42830.19530.24900.045*
C150.3864 (2)−0.05435 (18)0.11717 (16)0.0358 (5)
C160.2973 (3)−0.1186 (2)−0.06565 (17)0.0453 (5)
C170.2681 (3)−0.2264 (2)−0.1344 (2)0.0604 (7)
H17A0.2994−0.2961−0.09250.091*
H17B0.3192−0.2206−0.19170.091*
H17C0.1669−0.2321−0.16350.091*
C180.5596 (2)0.02706 (18)0.37069 (16)0.0363 (5)
C190.6546 (3)−0.0775 (2)0.40480 (18)0.0478 (6)
H19A0.6340−0.13890.35150.072*
H19B0.6377−0.10740.47160.072*
H19C0.7533−0.05360.41340.072*
U11U22U33U12U13U23
F10.0620 (10)0.1312 (19)0.1269 (17)0.0023 (11)0.0478 (11)−0.0189 (15)
S20.0679 (4)0.0285 (3)0.0365 (3)0.0074 (2)0.0066 (3)0.0035 (2)
O30.1095 (15)0.0395 (10)0.0444 (9)0.0104 (10)0.0014 (9)0.0058 (8)
O40.0573 (9)0.0333 (8)0.0485 (9)−0.0053 (7)0.0049 (7)−0.0088 (7)
N50.0608 (11)0.0261 (9)0.0339 (9)0.0035 (8)0.0064 (8)0.0009 (7)
N60.0464 (10)0.0272 (9)0.0352 (9)0.0023 (7)0.0055 (7)−0.0024 (7)
N70.0465 (10)0.0263 (9)0.0373 (9)0.0032 (7)0.0038 (7)−0.0032 (7)
C80.0439 (13)0.082 (2)0.0635 (16)0.0081 (13)0.0142 (12)−0.0031 (15)
C90.0545 (14)0.0586 (16)0.0519 (14)0.0122 (12)0.0057 (11)−0.0124 (12)
C100.0479 (12)0.0374 (12)0.0440 (12)0.0021 (9)0.0022 (9)−0.0049 (10)
C110.0425 (11)0.0306 (11)0.0355 (10)0.0022 (9)0.0007 (8)0.0009 (8)
C120.0569 (14)0.0389 (13)0.0706 (17)−0.0043 (11)0.0157 (12)−0.0055 (12)
C130.0537 (15)0.0634 (18)0.089 (2)−0.0146 (13)0.0225 (14)−0.0058 (16)
C140.0481 (11)0.0247 (10)0.0381 (11)0.0007 (9)0.0051 (9)0.0005 (8)
C150.0451 (11)0.0272 (10)0.0352 (11)0.0004 (9)0.0083 (9)0.0008 (8)
C160.0603 (14)0.0361 (12)0.0377 (11)0.0047 (10)0.0060 (10)0.0030 (10)
C170.0867 (18)0.0469 (15)0.0405 (13)0.0070 (13)−0.0036 (12)−0.0061 (11)
C180.0389 (10)0.0315 (11)0.0387 (11)−0.0051 (8)0.0082 (8)−0.0007 (9)
C190.0494 (13)0.0440 (14)0.0452 (13)0.0053 (10)−0.0014 (10)−0.0028 (10)
F1—C81.359 (3)C10—C111.374 (3)
S2—C151.753 (2)C10—H100.9300
S2—C141.835 (2)C11—C121.386 (3)
O3—C161.211 (3)C11—C141.505 (3)
O4—C181.233 (3)C12—C131.376 (4)
N5—C161.368 (3)C12—H120.9300
N5—C151.374 (3)C13—H130.9300
N5—H50.8600C14—H140.9800
N6—C151.283 (3)C16—C171.487 (3)
N6—N71.399 (2)C17—H17A0.9600
N7—C181.347 (3)C17—H17B0.9600
N7—C141.470 (3)C17—H17C0.9600
C8—C91.361 (4)C18—C191.490 (3)
C8—C131.365 (4)C19—H19A0.9600
C9—C101.389 (3)C19—H19B0.9600
C9—H90.9300C19—H19C0.9600
C15—S2—C1488.91 (9)N7—C14—S2102.66 (13)
C16—N5—C15124.35 (18)C11—C14—S2112.67 (14)
C16—N5—H5117.8N7—C14—H14109.1
C15—N5—H5117.8C11—C14—H14109.1
C15—N6—N7109.31 (17)S2—C14—H14109.1
C18—N7—N6122.01 (17)N6—C15—N5120.17 (19)
C18—N7—C14120.85 (17)N6—C15—S2118.48 (16)
N6—N7—C14117.06 (16)N5—C15—S2121.34 (15)
F1—C8—C9118.6 (3)O3—C16—N5121.5 (2)
F1—C8—C13118.1 (3)O3—C16—C17123.5 (2)
C9—C8—C13123.3 (2)N5—C16—C17115.0 (2)
C8—C9—C10117.8 (2)C16—C17—H17A109.5
C8—C9—H9121.1C16—C17—H17B109.5
C10—C9—H9121.1H17A—C17—H17B109.5
C11—C10—C9120.8 (2)C16—C17—H17C109.5
C11—C10—H10119.6H17A—C17—H17C109.5
C9—C10—H10119.6H17B—C17—H17C109.5
C10—C11—C12119.2 (2)O4—C18—N7119.26 (19)
C10—C11—C14119.87 (19)O4—C18—C19122.74 (19)
C12—C11—C14120.9 (2)N7—C18—C19118.00 (18)
C13—C12—C11120.7 (2)C18—C19—H19A109.5
C13—C12—H12119.6C18—C19—H19B109.5
C11—C12—H12119.6H19A—C19—H19B109.5
C8—C13—C12118.1 (3)C18—C19—H19C109.5
C8—C13—H13120.9H19A—C19—H19C109.5
C12—C13—H13120.9H19B—C19—H19C109.5
N7—C14—C11114.02 (17)
C15—N6—N7—C18−162.76 (18)C12—C11—C14—N7−53.9 (3)
C15—N6—N7—C1414.0 (2)C10—C11—C14—S2−117.30 (19)
F1—C8—C9—C10179.9 (2)C12—C11—C14—S262.6 (2)
C13—C8—C9—C10−0.5 (4)C15—S2—C14—N715.35 (14)
C8—C9—C10—C110.5 (4)C15—S2—C14—C11−107.73 (16)
C9—C10—C11—C120.1 (3)N7—N6—C15—N5−178.19 (17)
C9—C10—C11—C14180.0 (2)N7—N6—C15—S20.2 (2)
C10—C11—C12—C13−0.8 (4)C16—N5—C15—N6−174.9 (2)
C14—C11—C12—C13179.4 (2)C16—N5—C15—S26.8 (3)
F1—C8—C13—C12179.5 (3)C14—S2—C15—N6−10.22 (18)
C9—C8—C13—C12−0.1 (5)C14—S2—C15—N5168.13 (18)
C11—C12—C13—C80.7 (4)C15—N5—C16—O34.0 (4)
C18—N7—C14—C11−81.0 (2)C15—N5—C16—C17−175.6 (2)
N6—N7—C14—C11102.1 (2)N6—N7—C18—O4179.87 (18)
C18—N7—C14—S2156.79 (16)C14—N7—C18—O43.2 (3)
N6—N7—C14—S2−20.1 (2)N6—N7—C18—C19−0.6 (3)
C10—C11—C14—N7126.2 (2)C14—N7—C18—C19−177.34 (18)
D—H···AD—HH···AD···AD—H···A
N5—H5···O4i0.861.962.815 (2)171
C10—H10···O3ii0.932.583.267 (3)131
C17—H17A···O4i0.962.463.316 (3)148
C19—H19B···O4iii0.962.553.335 (3)139
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N5—H5⋯O4i 0.861.962.815 (2)171
C10—H10⋯O3ii 0.932.583.267 (3)131
C17—H17A⋯O4i 0.962.463.316 (3)148
C19—H19B⋯O4iii 0.962.553.335 (3)139

Symmetry codes: (i) ; (ii) ; (iii) .

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