| Literature DB >> 23723857 |
H D Kavitha1, Sheetal B Marganakop, Ravindra R Kamble, K R Roopashree, H C Devarajegowda.
Abstract
The title mol-ecule, C12H12FN3O2S, shows a short intra-molecular S⋯O contact of 2.682 (18) Å. The dihedral angle between the thia-diazole ring and the benzene ring is 86.82 (11)°. In the crystal, N-H⋯O and C-H⋯O hydrogen bonds generate an R 2 (1)(6) graph-set motif between adjacent mol-ecules. Pairs of futher C-H⋯O hydrogen bonds form inversion dimers with R 2 (2)(8) ring motifs. These combine to generate a three-dimensional network and stack the mol-ecules along the b axis.Entities:
Year: 2013 PMID: 23723857 PMCID: PMC3648237 DOI: 10.1107/S1600536813009367
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H12FN3O2S | |
| Monoclinic, | Melting point: 490 K |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 2352 reflections | |
| θ = 2.2–25.0° | |
| µ = 0.26 mm−1 | |
| β = 101.823 (4)° | |
| Plate, colourless | |
| 0.24 × 0.20 × 0.12 mm |
| Bruker SMART CCD area-detector diffractometer | 2352 independent reflections |
| Radiation source: fine-focus sealed tube | 2035 reflections with |
| Graphite monochromator | |
| ω and φ scans | θmax = 25.0°, θmin = 2.2° |
| Absorption correction: multi-scan ( | |
| 11372 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2352 reflections | (Δ/σ)max < 0.001 |
| 172 parameters | Δρmax = 0.42 e Å−3 |
| 0 restraints | Δρmin = −0.34 e Å−3 |
| Experimental. Spectroscopic data IR (KBr); 3233, 2799, 1646, 1626, 1H NMR (300 MHz, CDCl3, δ
p.p.m.): 2.11 (s, 3H, CH3 of NHCOCH3), 2.24 (s, 3H, CH3 of –NCOCH3), 4.70 (s,
1H, C—H of C5—H), 6.85–7.10 (m, 4H, Ar—H), 11.77 (s, 1H, NHCO), MS
(m/ |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| F1 | −0.11204 (19) | 0.1673 (2) | 0.41894 (18) | 0.1026 (7) | |
| S2 | 0.32591 (7) | 0.09255 (5) | 0.09191 (4) | 0.0449 (2) | |
| O3 | 0.2686 (2) | −0.01822 (15) | −0.09810 (14) | 0.0665 (5) | |
| O4 | 0.56411 (17) | 0.11842 (14) | 0.42490 (13) | 0.0472 (4) | |
| N5 | 0.3591 (2) | −0.14036 (15) | 0.03899 (13) | 0.0407 (4) | |
| H5 | 0.3826 | −0.2127 | 0.0571 | 0.049* | |
| N6 | 0.45429 (18) | −0.08120 (15) | 0.21164 (13) | 0.0367 (4) | |
| N7 | 0.46451 (18) | 0.01994 (15) | 0.27693 (14) | 0.0374 (4) | |
| C8 | 0.0057 (3) | 0.1564 (3) | 0.3747 (2) | 0.0626 (7) | |
| C9 | 0.0942 (3) | 0.2522 (2) | 0.3768 (2) | 0.0558 (6) | |
| H9 | 0.0750 | 0.3239 | 0.4076 | 0.067* | |
| C10 | 0.2141 (2) | 0.2394 (2) | 0.33124 (17) | 0.0441 (5) | |
| H10 | 0.2768 | 0.3032 | 0.3321 | 0.053* | |
| C11 | 0.2413 (2) | 0.13353 (19) | 0.28503 (16) | 0.0372 (5) | |
| C12 | 0.1473 (3) | 0.0389 (2) | 0.2839 (2) | 0.0551 (6) | |
| H12 | 0.1645 | −0.0327 | 0.2520 | 0.066* | |
| C13 | 0.0287 (3) | 0.0497 (3) | 0.3296 (3) | 0.0677 (8) | |
| H13 | −0.0340 | −0.0140 | 0.3297 | 0.081* | |
| C14 | 0.3719 (2) | 0.12171 (18) | 0.23621 (16) | 0.0375 (5) | |
| H14 | 0.4283 | 0.1953 | 0.2490 | 0.045* | |
| C15 | 0.3864 (2) | −0.05435 (18) | 0.11717 (16) | 0.0358 (5) | |
| C16 | 0.2973 (3) | −0.1186 (2) | −0.06565 (17) | 0.0453 (5) | |
| C17 | 0.2681 (3) | −0.2264 (2) | −0.1344 (2) | 0.0604 (7) | |
| H17A | 0.2994 | −0.2961 | −0.0925 | 0.091* | |
| H17B | 0.3192 | −0.2206 | −0.1917 | 0.091* | |
| H17C | 0.1669 | −0.2321 | −0.1635 | 0.091* | |
| C18 | 0.5596 (2) | 0.02706 (18) | 0.37069 (16) | 0.0363 (5) | |
| C19 | 0.6546 (3) | −0.0775 (2) | 0.40480 (18) | 0.0478 (6) | |
| H19A | 0.6340 | −0.1389 | 0.3515 | 0.072* | |
| H19B | 0.6377 | −0.1074 | 0.4716 | 0.072* | |
| H19C | 0.7533 | −0.0536 | 0.4134 | 0.072* |
| F1 | 0.0620 (10) | 0.1312 (19) | 0.1269 (17) | 0.0023 (11) | 0.0478 (11) | −0.0189 (15) |
| S2 | 0.0679 (4) | 0.0285 (3) | 0.0365 (3) | 0.0074 (2) | 0.0066 (3) | 0.0035 (2) |
| O3 | 0.1095 (15) | 0.0395 (10) | 0.0444 (9) | 0.0104 (10) | 0.0014 (9) | 0.0058 (8) |
| O4 | 0.0573 (9) | 0.0333 (8) | 0.0485 (9) | −0.0053 (7) | 0.0049 (7) | −0.0088 (7) |
| N5 | 0.0608 (11) | 0.0261 (9) | 0.0339 (9) | 0.0035 (8) | 0.0064 (8) | 0.0009 (7) |
| N6 | 0.0464 (10) | 0.0272 (9) | 0.0352 (9) | 0.0023 (7) | 0.0055 (7) | −0.0024 (7) |
| N7 | 0.0465 (10) | 0.0263 (9) | 0.0373 (9) | 0.0032 (7) | 0.0038 (7) | −0.0032 (7) |
| C8 | 0.0439 (13) | 0.082 (2) | 0.0635 (16) | 0.0081 (13) | 0.0142 (12) | −0.0031 (15) |
| C9 | 0.0545 (14) | 0.0586 (16) | 0.0519 (14) | 0.0122 (12) | 0.0057 (11) | −0.0124 (12) |
| C10 | 0.0479 (12) | 0.0374 (12) | 0.0440 (12) | 0.0021 (9) | 0.0022 (9) | −0.0049 (10) |
| C11 | 0.0425 (11) | 0.0306 (11) | 0.0355 (10) | 0.0022 (9) | 0.0007 (8) | 0.0009 (8) |
| C12 | 0.0569 (14) | 0.0389 (13) | 0.0706 (17) | −0.0043 (11) | 0.0157 (12) | −0.0055 (12) |
| C13 | 0.0537 (15) | 0.0634 (18) | 0.089 (2) | −0.0146 (13) | 0.0225 (14) | −0.0058 (16) |
| C14 | 0.0481 (11) | 0.0247 (10) | 0.0381 (11) | 0.0007 (9) | 0.0051 (9) | 0.0005 (8) |
| C15 | 0.0451 (11) | 0.0272 (10) | 0.0352 (11) | 0.0004 (9) | 0.0083 (9) | 0.0008 (8) |
| C16 | 0.0603 (14) | 0.0361 (12) | 0.0377 (11) | 0.0047 (10) | 0.0060 (10) | 0.0030 (10) |
| C17 | 0.0867 (18) | 0.0469 (15) | 0.0405 (13) | 0.0070 (13) | −0.0036 (12) | −0.0061 (11) |
| C18 | 0.0389 (10) | 0.0315 (11) | 0.0387 (11) | −0.0051 (8) | 0.0082 (8) | −0.0007 (9) |
| C19 | 0.0494 (13) | 0.0440 (14) | 0.0452 (13) | 0.0053 (10) | −0.0014 (10) | −0.0028 (10) |
| F1—C8 | 1.359 (3) | C10—C11 | 1.374 (3) |
| S2—C15 | 1.753 (2) | C10—H10 | 0.9300 |
| S2—C14 | 1.835 (2) | C11—C12 | 1.386 (3) |
| O3—C16 | 1.211 (3) | C11—C14 | 1.505 (3) |
| O4—C18 | 1.233 (3) | C12—C13 | 1.376 (4) |
| N5—C16 | 1.368 (3) | C12—H12 | 0.9300 |
| N5—C15 | 1.374 (3) | C13—H13 | 0.9300 |
| N5—H5 | 0.8600 | C14—H14 | 0.9800 |
| N6—C15 | 1.283 (3) | C16—C17 | 1.487 (3) |
| N6—N7 | 1.399 (2) | C17—H17A | 0.9600 |
| N7—C18 | 1.347 (3) | C17—H17B | 0.9600 |
| N7—C14 | 1.470 (3) | C17—H17C | 0.9600 |
| C8—C9 | 1.361 (4) | C18—C19 | 1.490 (3) |
| C8—C13 | 1.365 (4) | C19—H19A | 0.9600 |
| C9—C10 | 1.389 (3) | C19—H19B | 0.9600 |
| C9—H9 | 0.9300 | C19—H19C | 0.9600 |
| C15—S2—C14 | 88.91 (9) | N7—C14—S2 | 102.66 (13) |
| C16—N5—C15 | 124.35 (18) | C11—C14—S2 | 112.67 (14) |
| C16—N5—H5 | 117.8 | N7—C14—H14 | 109.1 |
| C15—N5—H5 | 117.8 | C11—C14—H14 | 109.1 |
| C15—N6—N7 | 109.31 (17) | S2—C14—H14 | 109.1 |
| C18—N7—N6 | 122.01 (17) | N6—C15—N5 | 120.17 (19) |
| C18—N7—C14 | 120.85 (17) | N6—C15—S2 | 118.48 (16) |
| N6—N7—C14 | 117.06 (16) | N5—C15—S2 | 121.34 (15) |
| F1—C8—C9 | 118.6 (3) | O3—C16—N5 | 121.5 (2) |
| F1—C8—C13 | 118.1 (3) | O3—C16—C17 | 123.5 (2) |
| C9—C8—C13 | 123.3 (2) | N5—C16—C17 | 115.0 (2) |
| C8—C9—C10 | 117.8 (2) | C16—C17—H17A | 109.5 |
| C8—C9—H9 | 121.1 | C16—C17—H17B | 109.5 |
| C10—C9—H9 | 121.1 | H17A—C17—H17B | 109.5 |
| C11—C10—C9 | 120.8 (2) | C16—C17—H17C | 109.5 |
| C11—C10—H10 | 119.6 | H17A—C17—H17C | 109.5 |
| C9—C10—H10 | 119.6 | H17B—C17—H17C | 109.5 |
| C10—C11—C12 | 119.2 (2) | O4—C18—N7 | 119.26 (19) |
| C10—C11—C14 | 119.87 (19) | O4—C18—C19 | 122.74 (19) |
| C12—C11—C14 | 120.9 (2) | N7—C18—C19 | 118.00 (18) |
| C13—C12—C11 | 120.7 (2) | C18—C19—H19A | 109.5 |
| C13—C12—H12 | 119.6 | C18—C19—H19B | 109.5 |
| C11—C12—H12 | 119.6 | H19A—C19—H19B | 109.5 |
| C8—C13—C12 | 118.1 (3) | C18—C19—H19C | 109.5 |
| C8—C13—H13 | 120.9 | H19A—C19—H19C | 109.5 |
| C12—C13—H13 | 120.9 | H19B—C19—H19C | 109.5 |
| N7—C14—C11 | 114.02 (17) | ||
| C15—N6—N7—C18 | −162.76 (18) | C12—C11—C14—N7 | −53.9 (3) |
| C15—N6—N7—C14 | 14.0 (2) | C10—C11—C14—S2 | −117.30 (19) |
| F1—C8—C9—C10 | 179.9 (2) | C12—C11—C14—S2 | 62.6 (2) |
| C13—C8—C9—C10 | −0.5 (4) | C15—S2—C14—N7 | 15.35 (14) |
| C8—C9—C10—C11 | 0.5 (4) | C15—S2—C14—C11 | −107.73 (16) |
| C9—C10—C11—C12 | 0.1 (3) | N7—N6—C15—N5 | −178.19 (17) |
| C9—C10—C11—C14 | 180.0 (2) | N7—N6—C15—S2 | 0.2 (2) |
| C10—C11—C12—C13 | −0.8 (4) | C16—N5—C15—N6 | −174.9 (2) |
| C14—C11—C12—C13 | 179.4 (2) | C16—N5—C15—S2 | 6.8 (3) |
| F1—C8—C13—C12 | 179.5 (3) | C14—S2—C15—N6 | −10.22 (18) |
| C9—C8—C13—C12 | −0.1 (5) | C14—S2—C15—N5 | 168.13 (18) |
| C11—C12—C13—C8 | 0.7 (4) | C15—N5—C16—O3 | 4.0 (4) |
| C18—N7—C14—C11 | −81.0 (2) | C15—N5—C16—C17 | −175.6 (2) |
| N6—N7—C14—C11 | 102.1 (2) | N6—N7—C18—O4 | 179.87 (18) |
| C18—N7—C14—S2 | 156.79 (16) | C14—N7—C18—O4 | 3.2 (3) |
| N6—N7—C14—S2 | −20.1 (2) | N6—N7—C18—C19 | −0.6 (3) |
| C10—C11—C14—N7 | 126.2 (2) | C14—N7—C18—C19 | −177.34 (18) |
| H··· | ||||
| N5—H5···O4i | 0.86 | 1.96 | 2.815 (2) | 171 |
| C10—H10···O3ii | 0.93 | 2.58 | 3.267 (3) | 131 |
| C17—H17 | 0.96 | 2.46 | 3.316 (3) | 148 |
| C19—H19 | 0.96 | 2.55 | 3.335 (3) | 139 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N5—H5⋯O4i | 0.86 | 1.96 | 2.815 (2) | 171 |
| C10—H10⋯O3ii | 0.93 | 2.58 | 3.267 (3) | 131 |
| C17—H17 | 0.96 | 2.46 | 3.316 (3) | 148 |
| C19—H19 | 0.96 | 2.55 | 3.335 (3) | 139 |
Symmetry codes: (i) ; (ii) ; (iii) .