| Literature DB >> 23723856 |
Mohammed A S Omer1, Jia-Cheng Liu, Chao-Hu Xiao.
Abstract
In the title compound, C19H15N3O, the benzimidazole ring system makes dihedral angles of 44.36 (7) and 75.67 (7)° with the pyridine and benzene rings, respectively. In the crystal, phenolic O-H⋯N hydrogen bonds to benzimidazole N-atom acceptors give rise to a chain extending along [011].Entities:
Year: 2013 PMID: 23723856 PMCID: PMC3648236 DOI: 10.1107/S1600536813009458
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C19H15N3O | |
| Monoclinic, | Mo |
| Cell parameters from 2313 reflections | |
| θ = 3.1–28.4° | |
| µ = 0.09 mm−1 | |
| β = 93.756 (4)° | |
| Block, colourless | |
| 0.36 × 0.28 × 0.25 mm |
| Agilent SuperNova CCD diffractometer | 3010 independent reflections |
| Radiation source: SuperNova (Mo) X-ray Source | 2398 reflections with |
| Mirror monochromator | |
| Detector resolution: 16.0733 pixels mm-1 | θmax = 26.4°, θmin = 3.1° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 6104 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3010 reflections | (Δ/σ)max < 0.001 |
| 209 parameters | Δρmax = 0.14 e Å−3 |
| 0 restraints | Δρmin = −0.19 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.14368 (7) | 0.81061 (16) | 0.41079 (6) | 0.0423 (3) | |
| H1 | 0.0999 | 0.8588 | 0.4055 | 0.063* | |
| N1 | 0.38187 (8) | 0.62034 (16) | 0.40429 (6) | 0.0283 (3) | |
| N2 | 0.49801 (8) | 0.48060 (17) | 0.39527 (7) | 0.0336 (4) | |
| N3 | 0.32187 (10) | 0.05156 (18) | 0.48316 (8) | 0.0428 (4) | |
| C1 | 0.43786 (10) | 0.7203 (2) | 0.37809 (8) | 0.0295 (4) | |
| C2 | 0.43205 (11) | 0.8769 (2) | 0.35956 (9) | 0.0389 (4) | |
| H2 | 0.3843 | 0.9358 | 0.3640 | 0.047* | |
| C3 | 0.50055 (12) | 0.9406 (3) | 0.33434 (10) | 0.0478 (5) | |
| H3 | 0.4992 | 1.0456 | 0.3219 | 0.057* | |
| C4 | 0.57225 (12) | 0.8523 (3) | 0.32683 (10) | 0.0475 (5) | |
| H4 | 0.6170 | 0.8993 | 0.3091 | 0.057* | |
| C5 | 0.57749 (11) | 0.6972 (2) | 0.34522 (9) | 0.0417 (5) | |
| H5 | 0.6248 | 0.6381 | 0.3398 | 0.050* | |
| C6 | 0.50936 (10) | 0.6314 (2) | 0.37236 (8) | 0.0318 (4) | |
| C7 | 0.42090 (9) | 0.47799 (19) | 0.41279 (8) | 0.0281 (4) | |
| C8 | 0.38405 (10) | 0.33423 (19) | 0.43756 (7) | 0.0283 (4) | |
| C9 | 0.30488 (10) | 0.2814 (2) | 0.41897 (8) | 0.0325 (4) | |
| H9 | 0.2709 | 0.3400 | 0.3910 | 0.039* | |
| C10 | 0.27757 (12) | 0.1415 (2) | 0.44250 (9) | 0.0381 (4) | |
| H10 | 0.2247 | 0.1075 | 0.4292 | 0.046* | |
| C11 | 0.39780 (12) | 0.1031 (2) | 0.50078 (9) | 0.0433 (5) | |
| H11 | 0.4299 | 0.0425 | 0.5293 | 0.052* | |
| C12 | 0.43145 (11) | 0.2401 (2) | 0.47940 (8) | 0.0378 (4) | |
| H12 | 0.4851 | 0.2695 | 0.4927 | 0.045* | |
| C13 | 0.29647 (9) | 0.6653 (2) | 0.41536 (8) | 0.0289 (4) | |
| H13A | 0.2968 | 0.7650 | 0.4375 | 0.035* | |
| H13B | 0.2725 | 0.5864 | 0.4415 | 0.035* | |
| C14 | 0.24385 (10) | 0.68048 (19) | 0.35455 (8) | 0.0274 (4) | |
| C15 | 0.16757 (10) | 0.75871 (19) | 0.35461 (8) | 0.0296 (4) | |
| C16 | 0.12004 (11) | 0.7808 (2) | 0.29896 (9) | 0.0365 (4) | |
| H16 | 0.0702 | 0.8353 | 0.2991 | 0.044* | |
| C17 | 0.14634 (11) | 0.7224 (2) | 0.24338 (9) | 0.0413 (5) | |
| H17 | 0.1144 | 0.7380 | 0.2062 | 0.050* | |
| C18 | 0.21993 (12) | 0.6410 (3) | 0.24306 (9) | 0.0437 (5) | |
| H18 | 0.2370 | 0.5990 | 0.2060 | 0.052* | |
| C19 | 0.26815 (10) | 0.6220 (2) | 0.29809 (8) | 0.0355 (4) | |
| H19 | 0.3183 | 0.5687 | 0.2973 | 0.043* |
| O1 | 0.0284 (7) | 0.0537 (9) | 0.0450 (7) | 0.0191 (6) | 0.0052 (5) | −0.0023 (6) |
| N1 | 0.0204 (6) | 0.0291 (8) | 0.0358 (8) | 0.0049 (5) | 0.0060 (6) | 0.0042 (6) |
| N2 | 0.0233 (7) | 0.0334 (8) | 0.0449 (9) | 0.0074 (6) | 0.0073 (6) | 0.0041 (7) |
| N3 | 0.0508 (10) | 0.0338 (9) | 0.0452 (9) | 0.0011 (8) | 0.0126 (8) | 0.0048 (7) |
| C1 | 0.0226 (8) | 0.0337 (9) | 0.0324 (8) | 0.0011 (7) | 0.0037 (7) | 0.0031 (7) |
| C2 | 0.0303 (9) | 0.0353 (10) | 0.0516 (11) | 0.0054 (8) | 0.0064 (8) | 0.0087 (9) |
| C3 | 0.0403 (11) | 0.0404 (11) | 0.0630 (13) | −0.0016 (9) | 0.0064 (10) | 0.0189 (10) |
| C4 | 0.0314 (10) | 0.0546 (13) | 0.0571 (12) | −0.0072 (9) | 0.0088 (9) | 0.0173 (10) |
| C5 | 0.0225 (8) | 0.0515 (12) | 0.0519 (11) | 0.0033 (8) | 0.0086 (8) | 0.0079 (10) |
| C6 | 0.0231 (8) | 0.0346 (10) | 0.0378 (9) | 0.0022 (7) | 0.0026 (7) | 0.0050 (8) |
| C7 | 0.0222 (8) | 0.0306 (9) | 0.0313 (8) | 0.0056 (7) | 0.0017 (6) | 0.0004 (7) |
| C8 | 0.0297 (8) | 0.0273 (9) | 0.0286 (8) | 0.0056 (7) | 0.0078 (7) | −0.0009 (7) |
| C9 | 0.0300 (9) | 0.0347 (10) | 0.0330 (9) | 0.0033 (7) | 0.0026 (7) | 0.0020 (7) |
| C10 | 0.0384 (10) | 0.0356 (10) | 0.0411 (10) | −0.0040 (8) | 0.0078 (8) | −0.0014 (8) |
| C11 | 0.0453 (11) | 0.0409 (11) | 0.0438 (11) | 0.0093 (9) | 0.0028 (9) | 0.0131 (9) |
| C12 | 0.0332 (9) | 0.0403 (11) | 0.0394 (10) | 0.0055 (8) | −0.0010 (8) | 0.0048 (8) |
| C13 | 0.0217 (8) | 0.0292 (9) | 0.0366 (9) | 0.0064 (7) | 0.0082 (7) | 0.0014 (7) |
| C14 | 0.0220 (7) | 0.0244 (8) | 0.0363 (9) | 0.0016 (6) | 0.0061 (7) | 0.0025 (7) |
| C15 | 0.0226 (8) | 0.0261 (9) | 0.0405 (9) | 0.0022 (7) | 0.0052 (7) | 0.0027 (7) |
| C16 | 0.0240 (8) | 0.0363 (10) | 0.0489 (11) | 0.0016 (7) | 0.0001 (8) | 0.0074 (8) |
| C17 | 0.0342 (10) | 0.0499 (12) | 0.0391 (10) | −0.0072 (8) | −0.0037 (8) | 0.0058 (9) |
| C18 | 0.0381 (10) | 0.0574 (13) | 0.0363 (10) | −0.0058 (9) | 0.0077 (8) | −0.0041 (9) |
| C19 | 0.0257 (8) | 0.0407 (11) | 0.0410 (10) | 0.0024 (8) | 0.0079 (7) | −0.0019 (8) |
| O1—H1 | 0.8200 | C8—C12 | 1.393 (2) |
| O1—C15 | 1.362 (2) | C9—H9 | 0.9300 |
| N1—C1 | 1.387 (2) | C9—C10 | 1.374 (2) |
| N1—C7 | 1.370 (2) | C10—H10 | 0.9300 |
| N1—C13 | 1.4684 (19) | C11—H11 | 0.9300 |
| N2—C6 | 1.387 (2) | C11—C12 | 1.376 (3) |
| N2—C7 | 1.327 (2) | C12—H12 | 0.9300 |
| N3—C10 | 1.332 (2) | C13—H13A | 0.9700 |
| N3—C11 | 1.336 (3) | C13—H13B | 0.9700 |
| C1—C2 | 1.389 (2) | C13—C14 | 1.515 (2) |
| C1—C6 | 1.394 (2) | C14—C15 | 1.402 (2) |
| C2—H2 | 0.9300 | C14—C19 | 1.388 (2) |
| C2—C3 | 1.376 (3) | C15—C16 | 1.389 (2) |
| C3—H3 | 0.9300 | C16—H16 | 0.9300 |
| C3—C4 | 1.399 (3) | C16—C17 | 1.383 (3) |
| C4—H4 | 0.9300 | C17—H17 | 0.9300 |
| C4—C5 | 1.375 (3) | C17—C18 | 1.378 (3) |
| C5—H5 | 0.9300 | C18—H18 | 0.9300 |
| C5—C6 | 1.397 (2) | C18—C19 | 1.380 (3) |
| C7—C8 | 1.472 (2) | C19—H19 | 0.9300 |
| C8—C9 | 1.391 (2) | ||
| C15—O1—H1 | 109.5 | N3—C10—C9 | 124.25 (18) |
| C1—N1—C13 | 123.64 (13) | N3—C10—H10 | 117.9 |
| C7—N1—C1 | 106.57 (13) | C9—C10—H10 | 117.9 |
| C7—N1—C13 | 129.68 (14) | N3—C11—H11 | 118.0 |
| C7—N2—C6 | 105.34 (14) | N3—C11—C12 | 124.03 (17) |
| C10—N3—C11 | 116.32 (16) | C12—C11—H11 | 118.0 |
| N1—C1—C2 | 131.86 (15) | C8—C12—H12 | 120.5 |
| N1—C1—C6 | 105.87 (14) | C11—C12—C8 | 119.07 (17) |
| C2—C1—C6 | 122.27 (15) | C11—C12—H12 | 120.5 |
| C1—C2—H2 | 121.7 | N1—C13—H13A | 109.3 |
| C3—C2—C1 | 116.55 (17) | N1—C13—H13B | 109.3 |
| C3—C2—H2 | 121.7 | N1—C13—C14 | 111.43 (13) |
| C2—C3—H3 | 119.0 | H13A—C13—H13B | 108.0 |
| C2—C3—C4 | 122.08 (18) | C14—C13—H13A | 109.3 |
| C4—C3—H3 | 119.0 | C14—C13—H13B | 109.3 |
| C3—C4—H4 | 119.5 | C15—C14—C13 | 119.01 (14) |
| C5—C4—C3 | 121.03 (17) | C19—C14—C13 | 122.95 (14) |
| C5—C4—H4 | 119.5 | C19—C14—C15 | 118.03 (16) |
| C4—C5—H5 | 121.1 | O1—C15—C14 | 117.08 (15) |
| C4—C5—C6 | 117.82 (17) | O1—C15—C16 | 122.82 (15) |
| C6—C5—H5 | 121.1 | C16—C15—C14 | 120.10 (16) |
| N2—C6—C1 | 109.76 (14) | C15—C16—H16 | 119.8 |
| N2—C6—C5 | 130.01 (16) | C17—C16—C15 | 120.43 (16) |
| C1—C6—C5 | 120.21 (16) | C17—C16—H16 | 119.8 |
| N1—C7—C8 | 125.77 (14) | C16—C17—H17 | 120.0 |
| N2—C7—N1 | 112.44 (15) | C18—C17—C16 | 119.96 (17) |
| N2—C7—C8 | 121.79 (14) | C18—C17—H17 | 120.0 |
| C9—C8—C7 | 123.44 (15) | C17—C18—H18 | 120.2 |
| C9—C8—C12 | 117.26 (16) | C17—C18—C19 | 119.66 (18) |
| C12—C8—C7 | 119.21 (15) | C19—C18—H18 | 120.2 |
| C8—C9—H9 | 120.5 | C14—C19—H19 | 119.1 |
| C10—C9—C8 | 119.06 (16) | C18—C19—C14 | 121.77 (17) |
| C10—C9—H9 | 120.5 | C18—C19—H19 | 119.1 |
| O1—C15—C16—C17 | −178.45 (17) | C7—N1—C1—C6 | −0.32 (18) |
| N1—C1—C2—C3 | −179.45 (18) | C7—N1—C13—C14 | −104.93 (19) |
| N1—C1—C6—N2 | −0.75 (19) | C7—N2—C6—C1 | 1.54 (19) |
| N1—C1—C6—C5 | 177.82 (16) | C7—N2—C6—C5 | −176.85 (19) |
| N1—C7—C8—C9 | 44.3 (2) | C7—C8—C9—C10 | 176.76 (15) |
| N1—C7—C8—C12 | −139.15 (18) | C7—C8—C12—C11 | −177.78 (16) |
| N1—C13—C14—C15 | −164.53 (14) | C8—C9—C10—N3 | 0.7 (3) |
| N1—C13—C14—C19 | 14.6 (2) | C9—C8—C12—C11 | −1.0 (3) |
| N2—C7—C8—C9 | −134.83 (18) | C10—N3—C11—C12 | −0.2 (3) |
| N2—C7—C8—C12 | 41.7 (2) | C11—N3—C10—C9 | −0.7 (3) |
| N3—C11—C12—C8 | 1.1 (3) | C12—C8—C9—C10 | 0.2 (2) |
| C1—N1—C7—N2 | 1.36 (19) | C13—N1—C1—C2 | 3.4 (3) |
| C1—N1—C7—C8 | −177.87 (15) | C13—N1—C1—C6 | −176.74 (14) |
| C1—N1—C13—C14 | 70.6 (2) | C13—N1—C7—N2 | 177.48 (15) |
| C1—C2—C3—C4 | 0.8 (3) | C13—N1—C7—C8 | −1.7 (3) |
| C2—C1—C6—N2 | 179.12 (17) | C13—C14—C15—O1 | −2.9 (2) |
| C2—C1—C6—C5 | −2.3 (3) | C13—C14—C15—C16 | 176.89 (15) |
| C2—C3—C4—C5 | −0.8 (3) | C13—C14—C19—C18 | −178.34 (16) |
| C3—C4—C5—C6 | −0.8 (3) | C14—C15—C16—C17 | 1.8 (3) |
| C4—C5—C6—N2 | −179.47 (19) | C15—C14—C19—C18 | 0.8 (3) |
| C4—C5—C6—C1 | 2.3 (3) | C15—C16—C17—C18 | 0.3 (3) |
| C6—N2—C7—N1 | −1.79 (19) | C16—C17—C18—C19 | −1.8 (3) |
| C6—N2—C7—C8 | 177.48 (15) | C17—C18—C19—C14 | 1.2 (3) |
| C6—C1—C2—C3 | 0.7 (3) | C19—C14—C15—O1 | 177.92 (16) |
| C7—N1—C1—C2 | 179.83 (19) | C19—C14—C15—C16 | −2.3 (2) |
| H··· | ||||
| O1—H1···N2i | 0.82 | 1.95 | 2.7659 (18) | 177 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1⋯N2i | 0.82 | 1.95 | 2.7659 (18) | 177 |
Symmetry code: (i) .