Literature DB >> 23723849

N-{1,2-Bis(pyridin-3-yl)-2-[(E)-(pyridin-3-yl)methyl-idene-amino]-eth-yl}nicotinamide.

Claudia M Quiroa-Montalván1, Daniel Chávez, Reyna Reyes-Martínez, David Morales-Morales, Miguel Parra-Hake.   

Abstract

In the title compound, C24H20N6O, the pyridin-3-yl groups on the ethyl-ene fragment are found in a trans conformation with a C(py)-C(e)-C(e)-C(py) (py = pyridine, e = ethylene) torsion angle of 179.2 (3)°. The dihedral angle between the pyridine rings is 3.5 (1)°. In the crystal, N-H⋯N and C-H⋯O=C inter-actions form a layer arrangement parallel to the bc plane. The compound displays disorder of the ethyl-ene fragment over two positions with an occupancy ratio of 0.676 (7) to 0.324 (7) that extends into the amide section of the nicotinamide moiety.

Entities:  

Year:  2013        PMID: 23723849      PMCID: PMC3647883          DOI: 10.1107/S1600536813008544

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For supra­molecular structures, see: Nyburg & Wood (1964 ▶); House & Sadler (1973 ▶); Koçak (2000 ▶). For a related enanti­oselective catalyst, see: Jacobsen et al. (1990 ▶); Corey & Kühnle (1997 ▶); Corey et al. (1989 ▶). For coordination compounds with polypyridine ligands related to the title compound, see: Parra-Hake et al. (2000 ▶); Cruz Enríquez et al. (2012 ▶). For the synthesis of analogous compounds, see: Proskurnina et al. (2002 ▶); Tu et al. (2009 ▶); Irving & Parkins (1965 ▶).

Experimental

Crystal data

C24H20N6O M = 408.46 Monoclinic, a = 11.4868 (17) Å b = 8.7275 (13) Å c = 21.105 (3) Å β = 99.857 (3)° V = 2084.6 (5) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 298 K 0.28 × 0.26 × 0.14 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶ T min = 0.984, T max = 0.992 17508 measured reflections 3821 independent reflections 2371 reflections with I > 2σ(I) R int = 0.050

Refinement

R[F 2 > 2σ(F 2)] = 0.071 wR(F 2) = 0.198 S = 1.02 3821 reflections 312 parameters 48 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.25 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813008544/zl2533sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813008544/zl2533Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813008544/zl2533Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H20N6OF(000) = 856
Mr = 408.46Dx = 1.301 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3500 reflections
a = 11.4868 (17) Åθ = 2.4–23.6°
b = 8.7275 (13) ŵ = 0.08 mm1
c = 21.105 (3) ÅT = 298 K
β = 99.857 (3)°Prism, colourless
V = 2084.6 (5) Å30.28 × 0.26 × 0.14 mm
Z = 4
Bruker SMART APEX CCD diffractometer3821 independent reflections
Radiation source: fine-focus sealed tube2371 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.050
Detector resolution: 0.661 pixels mm-1θmax = 25.4°, θmin = 1.8°
ω–scansh = −13→13
Absorption correction: multi-scan (SADABS; Bruker, 2007k = −10→10
Tmin = 0.984, Tmax = 0.992l = −25→25
17508 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.071Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.198H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0806P)2 + 0.8743P] where P = (Fo2 + 2Fc2)/3
3821 reflections(Δ/σ)max < 0.001
312 parametersΔρmax = 0.34 e Å3
48 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.3921 (12)0.342 (4)0.0332 (5)0.109 (5)0.61 (6)
O1B0.388 (2)0.408 (5)0.0340 (9)0.121 (7)0.39 (6)
N10.1399 (3)0.3383 (5)0.18544 (14)0.1025 (11)
C20.2412 (3)0.3745 (4)0.16651 (14)0.0731 (9)
H20.29210.44130.19210.088*
C30.2751 (2)0.3191 (3)0.11162 (12)0.0571 (7)
C40.2000 (3)0.2207 (4)0.07388 (16)0.0878 (10)
H40.21950.18150.03610.105*
C50.0947 (3)0.1806 (5)0.0931 (2)0.1138 (14)
H50.04240.11270.06910.137*
C60.0703 (3)0.2443 (6)0.1484 (2)0.1124 (15)
H6−0.00120.21880.16070.135*
C70.3861 (3)0.3661 (4)0.08965 (13)0.0665 (8)
N80.4788 (2)0.4040 (3)0.13361 (11)0.0601 (6)
H80.479 (3)0.397 (3)0.1736 (15)0.072*
C90.5966 (4)0.4277 (5)0.1140 (2)0.0568 (12)0.676 (7)
H90.58240.46370.06940.068*0.676 (7)
C100.6602 (4)0.5549 (6)0.1553 (2)0.0574 (12)0.676 (7)
H100.67930.52190.20030.069*0.676 (7)
C9B0.5658 (7)0.5179 (11)0.1168 (4)0.057 (2)0.324 (7)
H9B0.56160.52350.07010.068*0.324 (7)
C10B0.6859 (6)0.4612 (10)0.1491 (4)0.059 (2)0.324 (7)
H10B0.69200.45780.19600.071*0.324 (7)
N110.7701 (2)0.5794 (3)0.12864 (11)0.0712 (7)
N121.1564 (3)0.7923 (6)0.1683 (2)0.1422 (16)
C131.0551 (4)0.7403 (5)0.18534 (19)0.1078 (13)
H131.04380.75620.22740.129*
C140.9677 (3)0.6652 (4)0.14390 (16)0.0712 (8)
C150.9841 (3)0.6467 (4)0.08213 (18)0.0862 (10)
H150.92620.59880.05250.103*
C161.0847 (4)0.6976 (6)0.0634 (2)0.1156 (15)
H161.09600.68500.02110.139*
C171.1665 (4)0.7655 (7)0.1062 (3)0.1348 (19)
H171.23560.79700.09260.162*
C180.8618 (3)0.6101 (4)0.16693 (14)0.0697 (8)
H180.86340.59790.21080.084*
N190.7524 (3)0.1072 (3)0.04909 (13)0.0848 (8)
C200.7026 (3)0.2381 (4)0.05998 (15)0.0755 (9)
H200.68100.30320.02510.091*
C210.6799 (3)0.2862 (3)0.11762 (17)0.0752 (9)
C220.7164 (3)0.1917 (4)0.16992 (16)0.0744 (9)
H220.70540.22080.21090.089*
C230.7687 (3)0.0550 (4)0.16045 (16)0.0746 (9)
H230.7932−0.01120.19470.090*
C240.7842 (3)0.0183 (4)0.10042 (18)0.0846 (10)
H240.8195−0.07540.09440.102*
N250.4976 (3)0.8743 (3)0.21511 (13)0.0795 (8)
C260.5503 (3)0.7463 (4)0.20567 (17)0.0863 (10)
H260.57460.68510.24160.104*
C270.5731 (3)0.6934 (4)0.14883 (18)0.0860 (11)
C280.5332 (3)0.7813 (4)0.09498 (16)0.0772 (9)
H280.54580.75020.05460.093*
C290.4749 (3)0.9150 (4)0.10240 (15)0.0778 (9)
H290.44670.97690.06730.093*
C300.4591 (3)0.9551 (4)0.16320 (17)0.0842 (10)
H300.41851.04540.16800.101*
U11U22U33U12U13U23
O10.089 (4)0.189 (14)0.055 (3)−0.054 (6)0.026 (3)−0.040 (4)
O1B0.144 (10)0.172 (17)0.049 (6)−0.066 (10)0.022 (5)0.009 (7)
N10.0616 (17)0.170 (3)0.0795 (19)−0.006 (2)0.0214 (15)0.001 (2)
C20.0564 (17)0.103 (2)0.0609 (18)0.0009 (16)0.0132 (14)0.0014 (16)
C30.0552 (15)0.0628 (17)0.0527 (15)−0.0015 (13)0.0074 (12)0.0027 (13)
C40.074 (2)0.111 (3)0.078 (2)−0.016 (2)0.0106 (17)−0.018 (2)
C50.076 (3)0.149 (4)0.113 (3)−0.046 (3)0.004 (2)−0.012 (3)
C60.062 (2)0.179 (4)0.097 (3)−0.026 (3)0.017 (2)0.020 (3)
C70.0663 (18)0.090 (2)0.0447 (16)−0.0137 (16)0.0145 (14)−0.0084 (15)
N80.0593 (14)0.0737 (16)0.0497 (13)−0.0127 (12)0.0164 (12)0.0006 (12)
C90.060 (3)0.061 (3)0.052 (2)−0.004 (2)0.0180 (19)0.001 (2)
C100.062 (3)0.062 (3)0.050 (2)−0.002 (2)0.0136 (18)−0.001 (2)
C9B0.065 (4)0.056 (5)0.051 (4)−0.003 (4)0.016 (3)−0.001 (4)
C10B0.062 (4)0.063 (5)0.053 (4)−0.007 (4)0.012 (3)−0.004 (4)
N110.0568 (14)0.0999 (19)0.0586 (14)−0.0186 (14)0.0144 (12)0.0066 (13)
N120.085 (2)0.204 (4)0.131 (3)−0.063 (3)−0.001 (2)0.024 (3)
C130.089 (3)0.149 (4)0.083 (2)−0.028 (3)0.006 (2)0.015 (2)
C140.0514 (16)0.084 (2)0.078 (2)0.0023 (16)0.0122 (15)0.0171 (17)
C150.072 (2)0.100 (3)0.088 (2)−0.0076 (19)0.0172 (18)0.002 (2)
C160.089 (3)0.166 (4)0.100 (3)−0.010 (3)0.038 (3)0.018 (3)
C170.081 (3)0.187 (5)0.142 (4)−0.027 (3)0.036 (3)0.050 (4)
C180.0616 (18)0.087 (2)0.0602 (18)−0.0030 (16)0.0107 (15)0.0063 (16)
N190.108 (2)0.0748 (18)0.0763 (18)0.0132 (16)0.0290 (16)−0.0048 (15)
C200.078 (2)0.076 (2)0.077 (2)0.0063 (18)0.0268 (17)0.0182 (17)
C210.092 (2)0.0555 (17)0.093 (2)0.0013 (16)0.0553 (19)0.0079 (17)
C220.082 (2)0.073 (2)0.075 (2)−0.0111 (17)0.0341 (17)−0.0086 (17)
C230.0673 (19)0.081 (2)0.076 (2)0.0040 (17)0.0114 (16)0.0153 (17)
C240.098 (3)0.069 (2)0.093 (3)0.0172 (19)0.033 (2)0.0021 (19)
N250.101 (2)0.0716 (18)0.0682 (17)0.0071 (16)0.0199 (15)−0.0082 (14)
C260.109 (3)0.071 (2)0.090 (2)0.010 (2)0.046 (2)0.0196 (18)
C270.116 (3)0.0551 (18)0.107 (3)0.0028 (18)0.075 (2)0.0085 (18)
C280.094 (2)0.071 (2)0.075 (2)−0.0136 (18)0.0402 (18)−0.0158 (17)
C290.082 (2)0.082 (2)0.0651 (19)0.0154 (18)0.0010 (16)−0.0035 (17)
C300.100 (3)0.076 (2)0.075 (2)0.0219 (19)0.0088 (19)−0.0157 (18)
O1—C71.223 (8)N12—C171.357 (6)
O1B—C71.234 (12)C13—C141.379 (5)
N1—C61.307 (5)C13—H130.9300
N1—C21.332 (4)C14—C151.359 (5)
C2—C31.371 (4)C14—C181.465 (4)
C2—H20.9300C15—C161.358 (5)
C3—C41.372 (4)C15—H150.9300
C3—C71.487 (4)C16—C171.326 (6)
C4—C51.385 (5)C16—H160.9300
C4—H40.9300C17—H170.9300
C5—C61.365 (6)C18—H180.9300
C5—H50.9300N19—C201.316 (4)
C6—H60.9300N19—C241.332 (4)
C7—N81.329 (4)C20—C211.353 (4)
N8—C9B1.495 (9)C20—H200.9300
N8—C91.495 (5)C21—C221.384 (5)
N8—H80.84 (3)C22—C231.366 (4)
C9—C101.520 (5)C22—H220.9300
C9—C211.556 (6)C23—C241.348 (4)
C9—H90.9800C23—H230.9300
C10—N111.483 (4)C24—H240.9300
C10—C271.561 (6)N25—C261.302 (4)
C10—H100.9800N25—C301.314 (4)
C9B—C10B1.514 (8)C26—C271.352 (4)
C9B—C271.671 (11)C26—H260.9300
C9B—H9B0.9800C27—C281.382 (5)
C10B—N111.526 (7)C28—C291.368 (4)
C10B—C211.662 (10)C28—H280.9300
C10B—H10B0.9800C29—C301.372 (4)
N11—C181.242 (3)C29—H290.9300
N12—C131.354 (5)C30—H300.9300
C6—N1—C2116.5 (3)N12—C13—H13118.1
N1—C2—C3124.0 (3)C14—C13—H13118.1
N1—C2—H2118.0C15—C14—C13117.3 (3)
C3—C2—H2118.0C15—C14—C18122.6 (3)
C2—C3—C4118.0 (3)C13—C14—C18120.1 (3)
C2—C3—C7123.3 (3)C16—C15—C14120.4 (4)
C4—C3—C7118.6 (3)C16—C15—H15119.8
C3—C4—C5118.8 (3)C14—C15—H15119.8
C3—C4—H4120.6C17—C16—C15119.2 (4)
C5—C4—H4120.6C17—C16—H16120.4
C6—C5—C4117.7 (4)C15—C16—H16120.4
C6—C5—H5121.1C16—C17—N12124.5 (4)
C4—C5—H5121.1C16—C17—H17117.7
N1—C6—C5125.0 (3)N12—C17—H17117.7
N1—C6—H6117.5N11—C18—C14121.0 (3)
C5—C6—H6117.5N11—C18—H18119.5
O1—C7—N8123.4 (7)C14—C18—H18119.5
O1B—C7—N8116.5 (13)C20—N19—C24115.5 (3)
O1—C7—C3116.8 (8)N19—C20—C21125.7 (3)
O1B—C7—C3122.5 (12)N19—C20—H20117.2
N8—C7—C3118.6 (2)C21—C20—H20117.2
C7—N8—C9B119.2 (4)C20—C21—C22117.0 (3)
C7—N8—C9119.7 (3)C20—C21—C9114.4 (3)
C7—N8—H8123 (2)C22—C21—C9127.7 (3)
C9B—N8—H8113 (2)C20—C21—C10B130.0 (4)
C9—N8—H8116 (2)C22—C21—C10B104.0 (4)
N8—C9—C10108.1 (3)C23—C22—C21119.0 (3)
N8—C9—C21117.0 (3)C23—C22—H22120.5
C10—C9—C21108.7 (4)C21—C22—H22120.5
N8—C9—H9107.6C24—C23—C22118.5 (3)
C10—C9—H9107.6C24—C23—H23120.7
C21—C9—H9107.6C22—C23—H23120.7
N11—C10—C9104.1 (3)N19—C24—C23124.3 (3)
N11—C10—C27115.5 (3)N19—C24—H24117.8
C9—C10—C27106.1 (4)C23—C24—H24117.8
N11—C10—H10110.3C26—N25—C30115.6 (3)
C9—C10—H10110.3N25—C26—C27126.5 (3)
C27—C10—H10110.3N25—C26—H26116.8
N8—C9B—C10B105.6 (6)C27—C26—H26116.8
N8—C9B—C27120.2 (6)C26—C27—C28117.0 (3)
C10B—C9B—C2798.0 (7)C26—C27—C10113.9 (3)
N8—C9B—H9B110.7C28—C27—C10128.2 (3)
C10B—C9B—H9B110.7C26—C27—C9B131.9 (4)
C27—C9B—H9B110.7C28—C27—C9B100.9 (4)
C9B—C10B—N11103.0 (6)C10—C27—C9B46.6 (3)
C9B—C10B—C2198.5 (7)C29—C28—C27118.6 (3)
N11—C10B—C21119.5 (6)C29—C28—H28120.7
C9B—C10B—H10B111.5C27—C28—H28120.7
N11—C10B—H10B111.5C28—C29—C30118.1 (3)
C21—C10B—H10B111.5C28—C29—H29121.0
C18—N11—C10117.8 (3)C30—C29—H29121.0
C18—N11—C10B118.0 (4)N25—C30—C29124.3 (3)
C13—N12—C17114.7 (4)N25—C30—H30117.9
N12—C13—C14123.8 (4)C29—C30—H30117.9
D—H···AD—HH···AD···AD—H···A
N8—H8···N25i0.84 (3)2.33 (3)3.168 (4)174 (3)
C28—H28···O1ii0.932.253.163 (16)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N8—H8⋯N25i 0.84 (3)2.33 (3)3.168 (4)174 (3)
C28—H28⋯O1ii 0.932.253.163 (16)169

Symmetry codes: (i) ; (ii) .

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