Literature DB >> 23723802

(Z)-3β-(2-Chloro-anilino)-17(20)-pregnene.

Jun-Yi Hu1, Jiang Wang, Ying-Qian Xu, Yun Gao, Guo-Yong Xiao.   

Abstract

In the pregnene fragment of the title compound, C27H38ClN, the three six-membered rings exhibit chair conformations and the five-membered ring has a distorted envelope form with the fused C atom not bearing a methyl group as the flap atom. The amino group is involved in the formation of an intra-molecular N-H⋯Cl hydrogen bond. The crystal packing exhibits no short inter-molecular contacts.

Entities:  

Year:  2013        PMID: 23723802      PMCID: PMC3647836          DOI: 10.1107/S1600536813007290

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of pregnene-type steroidal alkaloid derivatives, see: Hua et al. (2005 ▶); Hunter & Priest (2006 ▶). For the crystal structure of the related compound (Z)-3α-(1,3-dioxoisoindolin-2-yl)-17 (20)-pregnene, see: Qi et al. (2011 ▶).

Experimental

Crystal data

C27H38ClN M = 412.03 Monoclinic, a = 7.281 (1) Å b = 17.467 (2) Å c = 9.1310 (12) Å β = 106.447 (7)° V = 1113.7 (2) Å3 Z = 2 Mo Kα radiation μ = 0.19 mm−1 T = 113 K 0.26 × 0.24 × 0.18 mm

Data collection

Rigaku Saturn724 CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005 ▶) T min = 0.953, T max = 0.967 14303 measured reflections 5276 independent reflections 4089 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.066 S = 0.97 5276 reflections 269 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.25 e Å−3 Absolute structure: Flack (1983 ▶), 2537 Friedel pairs Flack parameter: 0.02 (3) Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: CrystalStructure (Rigaku/MSC, 2005 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813007290/cv5384sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813007290/cv5384Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C27H38ClNF(000) = 448
Mr = 412.03Dx = 1.229 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 4165 reflections
a = 7.281 (1) Åθ = 1.2–27.9°
b = 17.467 (2) ŵ = 0.19 mm1
c = 9.1310 (12) ÅT = 113 K
β = 106.447 (7)°Prism, colourless
V = 1113.7 (2) Å30.26 × 0.24 × 0.18 mm
Z = 2
Rigaku Saturn724 CCD diffractometer5276 independent reflections
Radiation source: rotating anode4089 reflections with I > 2σ(I)
Multilayer monochromatorRint = 0.038
Detector resolution: 14.222 pixels mm-1θmax = 27.9°, θmin = 2.3°
ω scansh = −9→9
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005)k = −22→22
Tmin = 0.953, Tmax = 0.967l = −11→11
14303 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.066w = 1/[σ2(Fo2) + (0.0299P)2] where P = (Fo2 + 2Fc2)/3
S = 0.97(Δ/σ)max = 0.001
5276 reflectionsΔρmax = 0.18 e Å3
269 parametersΔρmin = −0.25 e Å3
1 restraintAbsolute structure: Flack (1983), 2537 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.02 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.65026 (5)0.47549 (2)0.27405 (4)0.02681 (9)
N10.72923 (18)0.63876 (7)0.23132 (14)0.0219 (3)
C10.4738 (2)0.83125 (8)0.15203 (16)0.0184 (3)
H1A0.34080.84340.15150.022*
H1B0.48850.84570.05110.022*
C1'0.86537 (19)0.59002 (8)0.20670 (15)0.0179 (3)
C20.50533 (19)0.74475 (8)0.17404 (17)0.0193 (3)
H2A0.42140.71790.08430.023*
H2B0.46690.72860.26500.023*
C2'0.84853 (19)0.51050 (8)0.22294 (15)0.0188 (3)
C30.7134 (2)0.72010 (8)0.19420 (16)0.0194 (3)
H30.74210.72720.09430.023*
C3'0.9773 (2)0.45928 (8)0.19481 (17)0.0235 (3)
H3'0.95930.40600.20640.028*
C40.8522 (2)0.76977 (8)0.31296 (16)0.0193 (3)
H4A0.83700.75860.41520.023*
H4B0.98520.75670.31490.023*
C4'1.1333 (2)0.48461 (9)0.14969 (15)0.0260 (3)
H4'1.22280.44930.13020.031*
C50.81801 (19)0.85484 (8)0.27867 (16)0.0168 (3)
H50.82930.86310.17320.020*
C5'1.1556 (2)0.56290 (9)0.13369 (16)0.0253 (3)
H5'1.26170.58130.10290.030*
C60.97282 (19)0.90405 (8)0.38521 (17)0.0213 (3)
H6A0.96900.89660.49180.026*
H6B1.10020.88740.37860.026*
C6'1.0254 (2)0.61462 (8)0.16199 (16)0.0218 (3)
H6'1.04460.66790.15100.026*
C70.94543 (18)0.98860 (8)0.34445 (16)0.0203 (3)
H7A0.96520.99710.24280.024*
H7B1.04251.01890.42000.024*
C80.74540 (18)1.01621 (7)0.34212 (16)0.0156 (3)
H80.73121.01160.44760.019*
C90.58989 (18)0.96592 (8)0.23272 (15)0.0147 (3)
H90.61200.97030.12980.018*
C100.61220 (18)0.87966 (8)0.27571 (15)0.0151 (3)
C110.38697 (19)0.99738 (7)0.21507 (16)0.0197 (3)
H11A0.29530.96880.13230.024*
H11B0.35270.98750.31080.024*
C120.36389 (19)1.08327 (8)0.17908 (17)0.0192 (3)
H12A0.37581.09250.07520.023*
H12B0.23441.09980.18050.023*
C130.51445 (19)1.13112 (7)0.29440 (15)0.0151 (3)
C140.71243 (18)1.09903 (8)0.29169 (16)0.0157 (3)
H140.71301.10010.18230.019*
C150.85384 (19)1.16029 (8)0.37215 (16)0.0213 (3)
H15A0.97811.15490.34910.026*
H15B0.87541.15860.48410.026*
C160.7503 (2)1.23417 (8)0.30321 (18)0.0241 (3)
H16A0.78321.27660.37800.029*
H16B0.78701.24910.21070.029*
C170.5354 (2)1.21616 (8)0.26260 (15)0.0171 (3)
C180.4833 (2)1.12587 (8)0.45464 (16)0.0217 (3)
H18A0.58951.15120.52930.026*
H18B0.47791.07200.48290.026*
H18C0.36261.15110.45340.026*
C190.57245 (19)0.86552 (8)0.43077 (15)0.0199 (3)
H19A0.58880.81100.45650.024*
H19B0.44100.88100.42420.024*
H19C0.66230.89560.51010.024*
C200.4035 (2)1.27000 (8)0.22004 (15)0.0198 (3)
H200.45071.31980.20920.024*
C210.18870 (19)1.26393 (8)0.18609 (17)0.0228 (3)
H21A0.15101.20990.17590.027*
H21B0.12741.29090.09060.027*
H21C0.14831.28710.26970.027*
H100.635 (3)0.6182 (12)0.259 (2)0.059 (7)*
U11U22U33U12U13U23
Cl10.02351 (18)0.01886 (16)0.0400 (2)−0.00103 (17)0.01213 (15)−0.00106 (17)
N10.0254 (7)0.0144 (6)0.0291 (7)0.0032 (5)0.0132 (6)0.0030 (5)
C10.0165 (7)0.0165 (7)0.0206 (8)0.0016 (6)0.0030 (6)0.0003 (6)
C1'0.0200 (7)0.0189 (7)0.0130 (7)0.0026 (6)0.0020 (5)−0.0013 (6)
C20.0190 (7)0.0168 (7)0.0206 (8)0.0010 (6)0.0032 (6)0.0004 (6)
C2'0.0175 (7)0.0200 (7)0.0180 (7)−0.0008 (6)0.0037 (6)−0.0003 (6)
C30.0234 (7)0.0140 (7)0.0211 (8)0.0022 (6)0.0070 (6)0.0027 (6)
C3'0.0263 (8)0.0176 (8)0.0239 (8)0.0050 (6)0.0026 (6)−0.0016 (6)
C40.0181 (7)0.0168 (7)0.0235 (8)0.0047 (6)0.0066 (6)0.0019 (6)
C4'0.0240 (7)0.0274 (9)0.0268 (8)0.0092 (7)0.0076 (6)−0.0013 (7)
C50.0152 (7)0.0182 (7)0.0176 (7)0.0025 (5)0.0056 (6)0.0010 (6)
C5'0.0223 (8)0.0320 (9)0.0232 (8)0.0016 (6)0.0088 (6)−0.0020 (6)
C60.0131 (7)0.0214 (8)0.0277 (8)0.0029 (6)0.0030 (6)0.0004 (6)
C6'0.0240 (8)0.0175 (8)0.0241 (8)0.0002 (6)0.0069 (6)0.0015 (6)
C70.0130 (6)0.0196 (9)0.0265 (8)0.0002 (5)0.0029 (6)0.0003 (6)
C80.0129 (7)0.0156 (7)0.0177 (7)0.0003 (5)0.0033 (5)−0.0009 (5)
C90.0141 (6)0.0152 (7)0.0146 (7)0.0014 (6)0.0039 (5)0.0003 (5)
C100.0123 (6)0.0161 (7)0.0165 (7)0.0007 (5)0.0033 (5)0.0006 (6)
C110.0136 (7)0.0165 (8)0.0260 (8)−0.0003 (5)0.0008 (6)−0.0006 (6)
C120.0140 (7)0.0159 (7)0.0253 (8)0.0012 (5)0.0018 (6)−0.0010 (6)
C130.0147 (7)0.0144 (7)0.0159 (7)0.0009 (5)0.0039 (5)0.0009 (5)
C140.0139 (7)0.0186 (7)0.0154 (7)−0.0006 (6)0.0054 (5)0.0014 (5)
C150.0150 (7)0.0203 (8)0.0282 (8)−0.0018 (6)0.0052 (6)−0.0004 (6)
C160.0188 (8)0.0202 (8)0.0313 (9)−0.0017 (6)0.0036 (6)0.0007 (6)
C170.0198 (7)0.0168 (7)0.0143 (7)−0.0019 (6)0.0043 (6)−0.0032 (6)
C180.0231 (7)0.0209 (7)0.0239 (8)0.0033 (6)0.0114 (6)0.0004 (6)
C190.0187 (7)0.0203 (7)0.0222 (8)0.0029 (6)0.0081 (6)0.0022 (6)
C200.0236 (7)0.0164 (7)0.0207 (7)−0.0002 (6)0.0083 (6)−0.0006 (6)
C210.0249 (8)0.0184 (8)0.0266 (8)0.0032 (6)0.0099 (6)−0.0002 (6)
Cl1—C2'1.7485 (14)C8—C91.5527 (18)
N1—C1'1.3726 (18)C8—H81.0000
N1—C31.4576 (17)C9—C111.5414 (17)
N1—H100.875 (19)C9—C101.554 (2)
C1—C21.5329 (18)C9—H91.0000
C1—C101.5367 (18)C10—C191.5432 (18)
C1—H1A0.9900C11—C121.5349 (18)
C1—H1B0.9900C11—H11A0.9900
C1'—C2'1.4060 (19)C11—H11B0.9900
C1'—C6'1.4064 (19)C12—C131.5347 (19)
C2—C31.5350 (18)C12—H12A0.9900
C2—H2A0.9900C12—H12B0.9900
C2—H2B0.9900C13—C171.5295 (19)
C2'—C3'1.3715 (18)C13—C181.5456 (18)
C3—C41.5263 (19)C13—C141.5533 (18)
C3—H31.0000C14—C151.5219 (19)
C3'—C4'1.386 (2)C14—H141.0000
C3'—H3'0.9500C15—C161.537 (2)
C4—C51.5244 (19)C15—H15A0.9900
C4—H4A0.9900C15—H15B0.9900
C4—H4B0.9900C16—C171.5355 (19)
C4'—C5'1.390 (2)C16—H16A0.9900
C4'—H4'0.9500C16—H16B0.9900
C5—C61.5280 (19)C17—C201.3215 (19)
C5—C101.5528 (18)C18—H18A0.9800
C5—H51.0000C18—H18B0.9800
C5'—C6'1.386 (2)C18—H18C0.9800
C5'—H5'0.9500C19—H19A0.9800
C6—C71.5222 (19)C19—H19B0.9800
C6—H6A0.9900C19—H19C0.9800
C6—H6B0.9900C20—C211.5092 (19)
C6'—H6'0.9500C20—H200.9500
C7—C81.5286 (18)C21—H21A0.9800
C7—H7A0.9900C21—H21B0.9800
C7—H7B0.9900C21—H21C0.9800
C8—C141.5166 (18)
C1'—N1—C3125.43 (13)C8—C9—C10112.39 (10)
C1'—N1—H10117.1 (14)C11—C9—H9106.2
C3—N1—H10116.8 (14)C8—C9—H9106.2
C2—C1—C10113.79 (11)C10—C9—H9106.2
C2—C1—H1A108.8C1—C10—C19109.39 (11)
C10—C1—H1A108.8C1—C10—C5106.74 (11)
C2—C1—H1B108.8C19—C10—C5111.72 (10)
C10—C1—H1B108.8C1—C10—C9110.37 (10)
H1A—C1—H1B107.7C19—C10—C9110.70 (11)
N1—C1'—C2'120.46 (13)C5—C10—C9107.84 (10)
N1—C1'—C6'123.65 (13)C12—C11—C9114.48 (11)
C2'—C1'—C6'115.88 (12)C12—C11—H11A108.6
C1—C2—C3113.46 (11)C9—C11—H11A108.6
C1—C2—H2A108.9C12—C11—H11B108.6
C3—C2—H2A108.9C9—C11—H11B108.6
C1—C2—H2B108.9H11A—C11—H11B107.6
C3—C2—H2B108.9C13—C12—C11111.82 (11)
H2A—C2—H2B107.7C13—C12—H12A109.3
C3'—C2'—C1'122.68 (13)C11—C12—H12A109.3
C3'—C2'—Cl1118.79 (11)C13—C12—H12B109.3
C1'—C2'—Cl1118.48 (10)C11—C12—H12B109.3
N1—C3—C4113.32 (11)H12A—C12—H12B107.9
N1—C3—C2108.16 (11)C17—C13—C12119.26 (12)
C4—C3—C2111.01 (11)C17—C13—C18106.65 (11)
N1—C3—H3108.1C12—C13—C18110.45 (12)
C4—C3—H3108.1C17—C13—C14101.81 (11)
C2—C3—H3108.1C12—C13—C14106.17 (11)
C2'—C3'—C4'120.58 (13)C18—C13—C14112.30 (11)
C2'—C3'—H3'119.7C8—C14—C15119.79 (11)
C4'—C3'—H3'119.7C8—C14—C13114.02 (11)
C5—C4—C3111.79 (11)C15—C14—C13104.05 (11)
C5—C4—H4A109.3C8—C14—H14106.0
C3—C4—H4A109.3C15—C14—H14106.0
C5—C4—H4B109.3C13—C14—H14106.0
C3—C4—H4B109.3C14—C15—C16101.91 (11)
H4A—C4—H4B107.9C14—C15—H15A111.4
C3'—C4'—C5'118.37 (14)C16—C15—H15A111.4
C3'—C4'—H4'120.8C14—C15—H15B111.4
C5'—C4'—H4'120.8C16—C15—H15B111.4
C4—C5—C6111.68 (11)H15A—C15—H15B109.3
C4—C5—C10112.12 (11)C17—C16—C15105.97 (11)
C6—C5—C10112.85 (11)C17—C16—H16A110.5
C4—C5—H5106.6C15—C16—H16A110.5
C6—C5—H5106.6C17—C16—H16B110.5
C10—C5—H5106.6C15—C16—H16B110.5
C6'—C5'—C4'121.03 (14)H16A—C16—H16B108.7
C6'—C5'—H5'119.5C20—C17—C13130.08 (13)
C4'—C5'—H5'119.5C20—C17—C16122.11 (13)
C7—C6—C5111.61 (11)C13—C17—C16107.61 (11)
C7—C6—H6A109.3C13—C18—H18A109.5
C5—C6—H6A109.3C13—C18—H18B109.5
C7—C6—H6B109.3H18A—C18—H18B109.5
C5—C6—H6B109.3C13—C18—H18C109.5
H6A—C6—H6B108.0H18A—C18—H18C109.5
C5'—C6'—C1'121.45 (14)H18B—C18—H18C109.5
C5'—C6'—H6'119.3C10—C19—H19A109.5
C1'—C6'—H6'119.3C10—C19—H19B109.5
C6—C7—C8111.58 (11)H19A—C19—H19B109.5
C6—C7—H7A109.3C10—C19—H19C109.5
C8—C7—H7A109.3H19A—C19—H19C109.5
C6—C7—H7B109.3H19B—C19—H19C109.5
C8—C7—H7B109.3C17—C20—C21129.41 (13)
H7A—C7—H7B108.0C17—C20—H20115.3
C14—C8—C7111.92 (11)C21—C20—H20115.3
C14—C8—C9108.69 (11)C20—C21—H21A109.5
C7—C8—C9110.42 (11)C20—C21—H21B109.5
C14—C8—H8108.6H21A—C21—H21B109.5
C7—C8—H8108.6C20—C21—H21C109.5
C9—C8—H8108.6H21A—C21—H21C109.5
C11—C9—C8111.62 (11)H21B—C21—H21C109.5
C11—C9—C10113.61 (10)
C3—N1—C1'—C2'−169.28 (13)C4—C5—C10—C9−177.45 (11)
C3—N1—C1'—C6'9.5 (2)C6—C5—C10—C955.39 (14)
C10—C1—C2—C3−52.24 (16)C11—C9—C10—C159.98 (14)
N1—C1'—C2'—C3'177.82 (13)C8—C9—C10—C1−172.07 (10)
C6'—C1'—C2'—C3'−1.1 (2)C11—C9—C10—C19−61.28 (13)
N1—C1'—C2'—Cl10.32 (18)C8—C9—C10—C1966.67 (13)
C6'—C1'—C2'—Cl1−178.57 (10)C11—C9—C10—C5176.22 (11)
C1'—N1—C3—C4−80.43 (17)C8—C9—C10—C5−55.83 (13)
C1'—N1—C3—C2156.05 (13)C8—C9—C11—C1249.27 (15)
C1—C2—C3—N1173.59 (11)C10—C9—C11—C12177.62 (11)
C1—C2—C3—C448.69 (16)C9—C11—C12—C13−52.96 (16)
C1'—C2'—C3'—C4'0.6 (2)C11—C12—C13—C17170.00 (11)
Cl1—C2'—C3'—C4'178.12 (11)C11—C12—C13—C18−65.98 (15)
N1—C3—C4—C5−174.30 (11)C11—C12—C13—C1456.00 (15)
C2—C3—C4—C5−52.36 (16)C7—C8—C14—C15−53.21 (16)
C2'—C3'—C4'—C5'−0.1 (2)C9—C8—C14—C15−175.43 (11)
C3—C4—C5—C6−172.62 (11)C7—C8—C14—C13−177.36 (11)
C3—C4—C5—C1059.60 (15)C9—C8—C14—C1360.42 (14)
C3'—C4'—C5'—C6'0.0 (2)C17—C13—C14—C8171.90 (11)
C4—C5—C6—C7176.45 (11)C12—C13—C14—C8−62.61 (14)
C10—C5—C6—C7−56.16 (15)C18—C13—C14—C858.19 (15)
C4'—C5'—C6'—C1'−0.5 (2)C17—C13—C14—C1539.67 (13)
N1—C1'—C6'—C5'−177.85 (13)C12—C13—C14—C15165.16 (11)
C2'—C1'—C6'—C5'1.0 (2)C18—C13—C14—C15−74.04 (14)
C5—C6—C7—C855.07 (16)C8—C14—C15—C16−171.63 (12)
C6—C7—C8—C14−176.32 (11)C13—C14—C15—C16−42.82 (13)
C6—C7—C8—C9−55.10 (15)C14—C15—C16—C1729.17 (15)
C14—C8—C9—C11−50.99 (14)C12—C13—C17—C2047.9 (2)
C7—C8—C9—C11−174.11 (11)C18—C13—C17—C20−77.94 (18)
C14—C8—C9—C10−179.98 (10)C14—C13—C17—C20164.22 (14)
C7—C8—C9—C1056.89 (14)C12—C13—C17—C16−137.25 (13)
C2—C1—C10—C19−65.95 (15)C18—C13—C17—C1696.90 (13)
C2—C1—C10—C555.09 (14)C14—C13—C17—C16−20.94 (14)
C2—C1—C10—C9172.02 (11)C15—C16—C17—C20170.51 (13)
C4—C5—C10—C1−58.86 (13)C15—C16—C17—C13−4.83 (16)
C6—C5—C10—C1173.99 (11)C13—C17—C20—C21−1.4 (2)
C4—C5—C10—C1960.68 (15)C16—C17—C20—C21−175.62 (14)
C6—C5—C10—C19−66.48 (14)
D—H···AD—HH···AD···AD—H···A
N1—H10···Cl10.875 (19)2.50 (2)2.9569 (13)113.5 (16)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H10⋯Cl10.875 (19)2.50 (2)2.9569 (13)113.5 (16)
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