Literature DB >> 23723795

rac-(1S*,4aS*,8aS*)-4a-Hy-droxy-2-methyl-perhydro-spiro-[isoquinoline-4,1'-cyclo-hexa-n]-2'-one.

Sorho Siaka1, Anatoly T Soldatenkov, Anastasia V Malkova, Svetlana A Soldatova, Victor N Khrustalev.   

Abstract

In the title compound, C15H25NO2, all three six-membered rings adopt chair conformations. The cyclo-hexane and piperidine rings within the perhydro-isoquinoline are trans-trans fused. The N atom has a trigonal-pyramidal geometry (the sum of the bond angles is 328.0°). The methyl substituent occupies the sterically preferrable equatorial position. In the crystal, mol-ecules form infinite [100] chains via O-H⋯N hydrogen bonds.

Entities:  

Year:  2013        PMID: 23723795      PMCID: PMC3647829          DOI: 10.1107/S1600536813007010

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the synthesis, chemical properties and applications in medicine of the title compound, see: Plati & Wenner (1949 ▶); Ellefson et al. (1978 ▶); Soldatenkov et al. (2009 ▶). For related compounds, see: Plati & Wenner (1950 ▶); Soldatenkov et al. (2008 ▶); Soldatova et al. (2010 ▶); Siaka et al. (2012 ▶).

Experimental

Crystal data

C15H25NO2 M = 251.36 Monoclinic, a = 5.8438 (2) Å b = 18.5756 (7) Å c = 12.2148 (5) Å β = 95.116 (1)° V = 1320.66 (9) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 100 K 0.30 × 0.30 × 0.20 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.976, T max = 0.984 17142 measured reflections 3852 independent reflections 3221 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.102 S = 1.00 3852 reflections 167 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.48 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813007010/rk2397sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813007010/rk2397Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813007010/rk2397Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H25NO2F(000) = 552
Mr = 251.36Dx = 1.264 Mg m3
Monoclinic, P21/nMelting point = 437–439 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 5.8438 (2) ÅCell parameters from 6340 reflections
b = 18.5756 (7) Åθ = 2.2–32.6°
c = 12.2148 (5) ŵ = 0.08 mm1
β = 95.116 (1)°T = 100 K
V = 1320.66 (9) Å3Prism, colourless
Z = 40.30 × 0.30 × 0.20 mm
Bruker APEXII CCD diffractometer3852 independent reflections
Radiation source: fine–focus sealed tube3221 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.028
φ and ω scansθmax = 30.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −8→8
Tmin = 0.976, Tmax = 0.984k = −26→26
17142 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: calc
wR(F2) = 0.102H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.055P)2 + 0.4P] where P = (Fo2 + 2Fc2)/3
3852 reflections(Δ/σ)max < 0.001
167 parametersΔρmax = 0.48 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.72882 (11)0.10966 (4)0.39294 (6)0.01342 (14)
H10.847 (2)0.1345 (7)0.3939 (11)0.020*
C10.47868 (14)0.21494 (5)0.37839 (7)0.00990 (16)
C20.38858 (15)0.19624 (5)0.49006 (7)0.01161 (17)
H2A0.51430.17410.53840.014*
H2B0.34210.24120.52570.014*
N30.19197 (13)0.14659 (4)0.47886 (6)0.01124 (15)
C40.26546 (15)0.07765 (5)0.43377 (7)0.01177 (17)
H4A0.13560.04320.42930.014*
H4B0.39190.05700.48340.014*
C4A0.34662 (15)0.08849 (5)0.31979 (7)0.01051 (16)
H4C0.21570.10890.27120.013*
C50.41334 (16)0.01620 (5)0.27117 (7)0.01355 (18)
H5A0.5389−0.00590.31970.016*
H5B0.2797−0.01680.26780.016*
C60.49189 (17)0.02548 (5)0.15586 (8)0.01609 (18)
H6A0.36190.04300.10530.019*
H6B0.5416−0.02160.12830.019*
C70.69080 (17)0.07913 (5)0.15765 (8)0.01640 (19)
H7A0.73260.08670.08170.020*
H7B0.82640.05880.20140.020*
C80.62793 (16)0.15179 (5)0.20703 (7)0.01312 (17)
H8A0.50390.17470.15860.016*
H8B0.76340.18400.21080.016*
C8A0.54791 (15)0.14266 (5)0.32298 (7)0.01031 (16)
C90.11013 (17)0.13529 (5)0.58766 (7)0.01506 (18)
H9A0.05650.18110.61580.023*
H9B0.23600.11660.63810.023*
H9C−0.01670.10060.58180.023*
O1'0.18262 (12)0.23557 (4)0.22802 (6)0.01587 (15)
C1'0.29057 (15)0.25807 (5)0.31084 (7)0.01110 (17)
C3'0.69183 (15)0.26497 (5)0.40043 (8)0.01269 (17)
H3A0.80800.23990.45070.015*
H3B0.76020.27320.33020.015*
C4'0.63912 (16)0.33810 (5)0.45054 (8)0.01341 (18)
H4D0.58140.33080.52350.016*
H4E0.78180.36700.46090.016*
C5'0.45977 (16)0.37870 (5)0.37603 (8)0.01372 (18)
H5C0.52370.39050.30580.016*
H5D0.42100.42440.41170.016*
C6'0.24123 (16)0.33311 (5)0.35295 (8)0.01422 (18)
H6C0.16350.32880.42140.017*
H6D0.13510.35810.29780.017*
U11U22U33U12U13U23
O10.0096 (3)0.0127 (3)0.0174 (3)0.0011 (2)−0.0015 (2)0.0010 (2)
C10.0095 (4)0.0095 (4)0.0106 (4)0.0001 (3)0.0002 (3)−0.0001 (3)
C20.0127 (4)0.0115 (4)0.0106 (4)−0.0004 (3)0.0008 (3)−0.0006 (3)
N30.0123 (3)0.0107 (3)0.0110 (3)−0.0001 (3)0.0026 (3)0.0001 (3)
C40.0127 (4)0.0104 (4)0.0124 (4)0.0005 (3)0.0019 (3)0.0009 (3)
C4A0.0109 (4)0.0095 (4)0.0111 (4)−0.0003 (3)0.0007 (3)−0.0004 (3)
C50.0169 (4)0.0101 (4)0.0138 (4)−0.0005 (3)0.0022 (3)−0.0010 (3)
C60.0218 (5)0.0125 (4)0.0144 (4)−0.0008 (3)0.0042 (3)−0.0031 (3)
C70.0189 (4)0.0149 (4)0.0164 (4)−0.0001 (3)0.0071 (3)−0.0024 (3)
C80.0148 (4)0.0120 (4)0.0129 (4)−0.0012 (3)0.0036 (3)−0.0005 (3)
C8A0.0101 (4)0.0099 (4)0.0108 (4)0.0006 (3)0.0003 (3)0.0004 (3)
C90.0172 (4)0.0168 (4)0.0117 (4)0.0010 (3)0.0040 (3)0.0019 (3)
O1'0.0163 (3)0.0156 (3)0.0149 (3)0.0008 (2)−0.0029 (2)−0.0001 (2)
C1'0.0104 (4)0.0107 (4)0.0124 (4)−0.0004 (3)0.0022 (3)0.0019 (3)
C3'0.0107 (4)0.0111 (4)0.0161 (4)−0.0007 (3)0.0001 (3)−0.0015 (3)
C4'0.0134 (4)0.0114 (4)0.0153 (4)−0.0015 (3)0.0005 (3)−0.0016 (3)
C5'0.0157 (4)0.0106 (4)0.0149 (4)0.0000 (3)0.0019 (3)−0.0004 (3)
C6'0.0128 (4)0.0120 (4)0.0176 (4)0.0023 (3)0.0000 (3)−0.0012 (3)
O1—C8A1.4362 (10)C7—C81.5363 (13)
O1—H10.829 (14)C7—H7A0.9900
C1—C1'1.5393 (12)C7—H7B0.9900
C1—C21.5449 (12)C8—C8A1.5400 (12)
C1—C3'1.5581 (12)C8—H8A0.9900
C1—C8A1.5726 (12)C8—H8B0.9900
C2—N31.4701 (11)C9—H9A0.9800
C2—H2A0.9900C9—H9B0.9800
C2—H2B0.9900C9—H9C0.9800
N3—C91.4671 (11)O1'—C1'1.2175 (11)
N3—C41.4730 (11)C1'—C6'1.5223 (12)
C4—C4A1.5237 (12)C3'—C4'1.5326 (12)
C4—H4A0.9900C3'—H3A0.9900
C4—H4B0.9900C3'—H3B0.9900
C4A—C51.5328 (12)C4'—C5'1.5250 (13)
C4A—C8A1.5458 (12)C4'—H4D0.9900
C4A—H4C1.0000C4'—H4E0.9900
C5—C61.5296 (13)C5'—C6'1.5373 (13)
C5—H5A0.9900C5'—H5C0.9900
C5—H5B0.9900C5'—H5D0.9900
C6—C71.5297 (13)C6'—H6C0.9900
C6—H6A0.9900C6'—H6D0.9900
C6—H6B0.9900
C8A—O1—H1109.8 (9)C7—C8—C8A111.54 (7)
C1'—C1—C2107.88 (7)C7—C8—H8A109.3
C1'—C1—C3'107.69 (7)C8A—C8—H8A109.3
C2—C1—C3'108.16 (7)C7—C8—H8B109.3
C1'—C1—C8A114.36 (7)C8A—C8—H8B109.3
C2—C1—C8A108.00 (7)H8A—C8—H8B108.0
C3'—C1—C8A110.56 (7)O1—C8A—C8109.05 (7)
N3—C2—C1112.58 (7)O1—C8A—C4A104.79 (7)
N3—C2—H2A109.1C8—C8A—C4A109.95 (7)
C1—C2—H2A109.1O1—C8A—C1108.20 (7)
N3—C2—H2B109.1C8—C8A—C1114.37 (7)
C1—C2—H2B109.1C4A—C8A—C1110.01 (7)
H2A—C2—H2B107.8N3—C9—H9A109.5
C9—N3—C2108.70 (7)N3—C9—H9B109.5
C9—N3—C4110.10 (7)H9A—C9—H9B109.5
C2—N3—C4109.19 (7)N3—C9—H9C109.5
N3—C4—C4A110.58 (7)H9A—C9—H9C109.5
N3—C4—H4A109.5H9B—C9—H9C109.5
C4A—C4—H4A109.5O1'—C1'—C6'119.70 (8)
N3—C4—H4B109.5O1'—C1'—C1123.99 (8)
C4A—C4—H4B109.5C6'—C1'—C1116.31 (7)
H4A—C4—H4B108.1C4'—C3'—C1114.31 (7)
C4—C4A—C5110.42 (7)C4'—C3'—H3A108.7
C4—C4A—C8A111.17 (7)C1—C3'—H3A108.7
C5—C4A—C8A111.15 (7)C4'—C3'—H3B108.7
C4—C4A—H4C108.0C1—C3'—H3B108.7
C5—C4A—H4C108.0H3A—C3'—H3B107.6
C8A—C4A—H4C108.0C5'—C4'—C3'110.61 (7)
C6—C5—C4A111.44 (7)C5'—C4'—H4D109.5
C6—C5—H5A109.3C3'—C4'—H4D109.5
C4A—C5—H5A109.3C5'—C4'—H4E109.5
C6—C5—H5B109.3C3'—C4'—H4E109.5
C4A—C5—H5B109.3H4D—C4'—H4E108.1
H5A—C5—H5B108.0C4'—C5'—C6'110.64 (7)
C5—C6—C7110.51 (8)C4'—C5'—H5C109.5
C5—C6—H6A109.5C6'—C5'—H5C109.5
C7—C6—H6A109.5C4'—C5'—H5D109.5
C5—C6—H6B109.5C6'—C5'—H5D109.5
C7—C6—H6B109.5H5C—C5'—H5D108.1
H6A—C6—H6B108.1C1'—C6'—C5'112.77 (7)
C6—C7—C8111.71 (8)C1'—C6'—H6C109.0
C6—C7—H7A109.3C5'—C6'—H6C109.0
C8—C7—H7A109.3C1'—C6'—H6D109.0
C6—C7—H7B109.3C5'—C6'—H6D109.0
C8—C7—H7B109.3H6C—C6'—H6D107.8
H7A—C7—H7B107.9
C1'—C1—C2—N366.10 (9)C1'—C1—C8A—O1178.11 (7)
C3'—C1—C2—N3−177.68 (7)C2—C1—C8A—O1−61.79 (8)
C8A—C1—C2—N3−58.00 (9)C3'—C1—C8A—O156.37 (9)
C1—C2—N3—C9−176.76 (7)C1'—C1—C8A—C856.36 (10)
C1—C2—N3—C463.10 (9)C2—C1—C8A—C8176.46 (7)
C9—N3—C4—C4A178.93 (7)C3'—C1—C8A—C8−65.38 (9)
C2—N3—C4—C4A−61.80 (9)C1'—C1—C8A—C4A−67.95 (9)
N3—C4—C4A—C5−177.62 (7)C2—C1—C8A—C4A52.15 (9)
N3—C4—C4A—C8A58.53 (9)C3'—C1—C8A—C4A170.31 (7)
C4—C4A—C5—C6179.09 (7)C2—C1—C1'—O1'−111.77 (9)
C8A—C4A—C5—C6−57.05 (10)C3'—C1—C1'—O1'131.70 (9)
C4A—C5—C6—C756.19 (10)C8A—C1—C1'—O1'8.39 (12)
C5—C6—C7—C8−55.41 (11)C2—C1—C1'—C6'68.10 (9)
C6—C7—C8—C8A55.69 (10)C3'—C1—C1'—C6'−48.43 (10)
C7—C8—C8A—O159.18 (9)C8A—C1—C1'—C6'−171.74 (7)
C7—C8—C8A—C4A−55.19 (9)C1'—C1—C3'—C4'52.23 (10)
C7—C8—C8A—C1−179.54 (7)C2—C1—C3'—C4'−64.11 (9)
C4—C4A—C8A—O162.26 (9)C8A—C1—C3'—C4'177.83 (7)
C5—C4A—C8A—O1−61.17 (9)C1—C3'—C4'—C5'−58.21 (10)
C4—C4A—C8A—C8179.33 (7)C3'—C4'—C5'—C6'55.80 (10)
C5—C4A—C8A—C855.90 (9)O1'—C1'—C6'—C5'−129.56 (9)
C4—C4A—C8A—C1−53.84 (9)C1—C1'—C6'—C5'50.56 (10)
C5—C4A—C8A—C1−177.27 (7)C4'—C5'—C6'—C1'−52.24 (10)
D—H···AD—HH···AD···AD—H···A
O1—H1···N3i0.830 (12)2.195 (12)2.8967 (10)142.3 (12)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N3i 0.830 (12)2.195 (12)2.8967 (10)142.3 (12)

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and antiarrhythmic activity of 2-dialkylaminoalkyl-9-phenyl-1H-indeno[2,1-c]pyridine derivatives.

Authors:  C R Ellefson; C M Woo; J W Cusic
Journal:  J Med Chem       Date:  1978-04       Impact factor: 7.446

3.  3-Methyl-1,2,3,4,5,6,1',2',3',4'-deca-hydro-spiro-[benz[f]isoquinoline-1,2'-naphthalen]-1'-one.

Authors:  Sohro Siaka; Anatoly T Soldatenkov; Anastasia V Malkova; Elena A Sorokina; Victor N Khrustalev
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-27
  3 in total

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