Literature DB >> 23723786

μ3-Methoxido-κ(3) O:O:O-tris-(μ-l-p-tyrosinato-κ(3) N,O:O)tris-(l-p-tyrosinato-κ(2) N,O)trinickel(II,III) methanol tetra-solvate.

Weerinradah Tapala1, Timothy J Prior, Apinpus Rujiwatra.   

Abstract

A trinuclear nickel complex, [Ni3(C9H10NO3)6(CH3O)]·4CH4O, was synthesized and characterized as a neutral cluster containing the incomplete cubane {Ni3(μ1-O)(μ2-O)2(μ3-O)} core of 2M3-1 topology. The three nickel cations show similar octa-hedral coordination, {Ni(μ1-O)(μ2-O)2(μ3-O)(μ1-N)2}; the positive charge is balanced by six tyrosinate ligands and one methoxide ion. The mean oxidation state of each Ni(II) ion is therefore +2.33. The common coordination modes, chelating (via the amino N and the carboxyl-ate O atoms) and bridging (via the carboxyl-ate O atom), are exhibited by the tyrosinates. Three inter-ligand (intra-cluster) N-H⋯O hydrogen-bonding inter-actions stabilize the incomplete cubane-type moiety. Additional N-H⋯O, O-H⋯O and C-H⋯O inter-actions are formed between clusters, and between the clusters and methanol mol-ecules to regulate the spatial orientation of the tyrosinate and the assembly of the clusters in the crystal. The approximate equilateral triangular arrangement of the three nickel cations in the incomplete cubane-type moiety suggests the possible magnetic frustration, and the proximity of these metal cations indicates weak metallic bonds. The structure contains approximately 39% solvent-accessible volume between the clusters. This is filled with 17 mol-ecules of disordered methanol and was modelled with SQUEEZE [Spek (2009 ▶). Acta Cryst. D65, 148-155]; the reported unit-cell characteristics do not take these mol-ecules into account. The H atoms of the solvent mol-ecules have not been included in the crystal data.

Entities:  

Year:  2013        PMID: 23723786      PMCID: PMC3647820          DOI: 10.1107/S1600536813010696

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related incomplete cubane clusters, see: Ama et al. (2000 ▶); Lalia-Kantouri et al. (2010 ▶). For a nickel complex with l-tyrosine, see: Pei & Wang (2006 ▶). For structures with tyrosinate, see: Wojciechowska et al. (2011 ▶, 2012 ▶). For assignment of topology, see: Blatov (2012 ▶). For background to magnetic frustration, see: Hendrickson et al. (2005 ▶); Nakatsuji et al. (2005 ▶). For the CSD, see: Allen (2002 ▶).

Experimental

Crystal data

[Ni3(C9H10NO3)6(CH3O)]·4CH4O M = 1400.28 Monoclinic, a = 12.5688 (6) Å b = 25.3381 (9) Å c = 13.1058 (7) Å β = 96.740 (4)° V = 4145.0 (3) Å3 Z = 2 Mo Kα radiation μ = 0.74 mm−1 T = 150 K 0.36 × 0.35 × 0.34 mm

Data collection

Stoe IPDS2 diffractometer Absorption correction: analytical (a face-indexed absorption correction was applied using the Tompa method; Meulenaer de & Tompa, 1965 ▶) T min = 0.716, T max = 0.780 41350 measured reflections 16565 independent reflections 11845 reflections with I > 2σ(I) R int = 0.074

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.097 S = 0.88 16565 reflections 780 parameters 1 restraint H-atom parameters constrained Δρmax = 0.83 e Å−3 Δρmin = −0.38 e Å−3 Absolute structure: Flack (1983 ▶), 8080 Friedel pairs Flack parameter: 0.023 (9) Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813010696/tk5221sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813010696/tk5221Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni3(C9H10NO3)6(CH3O)]·4CH4OF(000) = 1454
Mr = 1400.28Dx = 1.122 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 3495 reflections
a = 12.5688 (6) Åθ = 1.6–28.3°
b = 25.3381 (9) ŵ = 0.74 mm1
c = 13.1058 (7) ÅT = 150 K
β = 96.740 (4)°Block, light-blue
V = 4145.0 (3) Å30.36 × 0.35 × 0.34 mm
Z = 2
Stoe IPDS2 diffractometer16565 independent reflections
Radiation source: fine-focus sealed tube11845 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.074
Detector resolution: 6.67 pixels mm-1θmax = 26.1°, θmin = 1.6°
ω scansh = −15→15
Absorption correction: analytical (a face-indexed absorption correction was applied using the Tompa method; Meulenaer de & Tompa, 1965)k = −31→31
Tmin = 0.716, Tmax = 0.780l = −16→14
41350 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H-atom parameters constrained
wR(F2) = 0.097w = 1/[σ2(Fo2) + (0.0444P)2] where P = (Fo2 + 2Fc2)/3
S = 0.88(Δ/σ)max = 0.002
16565 reflectionsΔρmax = 0.83 e Å3
780 parametersΔρmin = −0.38 e Å3
1 restraintAbsolute structure: Flack (1983), 8080 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.023 (9)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.67401 (3)0.209152 (16)0.66058 (4)0.03463 (11)
O1M0.64605 (17)0.28831 (10)0.62163 (19)0.0350 (5)
N10.7077 (2)0.21031 (14)0.8182 (2)0.0432 (7)
H1A0.66910.23590.84400.052*
H1B0.68840.17930.84390.052*
O10.83540 (19)0.22349 (9)0.6684 (2)0.0369 (6)
C10.8803 (3)0.23246 (14)0.7588 (3)0.0404 (9)
O20.9740 (2)0.25142 (11)0.7761 (2)0.0483 (7)
C20.8238 (3)0.21973 (14)0.8507 (3)0.0426 (9)
H20.82960.25070.89580.051*
C30.8785 (3)0.17307 (16)0.9118 (3)0.0477 (10)
H3A0.94980.18410.94030.057*
H3B0.83850.16550.96910.057*
C40.8886 (3)0.12271 (16)0.8527 (3)0.0478 (10)
C50.9647 (3)0.11715 (17)0.7819 (4)0.0558 (11)
H51.00820.14590.77130.067*
C60.9773 (4)0.07274 (18)0.7297 (4)0.0614 (12)
H61.02950.07070.68510.074*
C70.9103 (4)0.02862 (17)0.7426 (4)0.0590 (12)
C80.8360 (4)0.03291 (17)0.8129 (4)0.0612 (13)
H80.79160.00460.82340.073*
C90.8280 (3)0.07957 (17)0.8676 (4)0.0567 (11)
H90.77950.08130.91590.068*
O30.9161 (3)−0.01815 (12)0.6914 (3)0.0763 (10)
H30.9644−0.01660.65450.114*
N20.6949 (2)0.12825 (11)0.6396 (3)0.0416 (8)
H2A0.73210.11400.69570.050*
H2B0.63100.11200.62820.050*
O40.66026 (18)0.20168 (9)0.5025 (2)0.0370 (6)
C100.7201 (3)0.16670 (13)0.4722 (3)0.0363 (9)
O50.7561 (2)0.16689 (11)0.3872 (2)0.0455 (6)
C110.7544 (3)0.12247 (13)0.5498 (3)0.0405 (9)
H110.83010.12850.57430.049*
C120.7462 (3)0.06642 (14)0.5046 (4)0.0524 (11)
H12A0.78010.06600.44180.063*
H12B0.78590.04250.55270.063*
C130.6346 (3)0.04650 (13)0.4814 (3)0.0420 (9)
C140.5666 (3)0.06193 (14)0.3962 (4)0.0467 (10)
H140.59220.08580.35090.056*
C150.4626 (3)0.04394 (14)0.3745 (4)0.0473 (10)
H150.41910.05560.31660.057*
C160.4246 (3)0.00790 (15)0.4418 (3)0.0476 (10)
C170.4897 (3)−0.00772 (15)0.5270 (3)0.0469 (10)
H170.4648−0.03180.57230.056*
C180.5934 (3)0.01222 (16)0.5464 (3)0.0501 (10)
H180.63600.00180.60590.060*
O60.3242 (2)−0.01120 (10)0.4159 (2)0.0552 (8)
H6A0.3093−0.03180.46040.083*
Ni20.48220 (3)0.291099 (15)0.62530 (4)0.03586 (11)
N30.4712 (2)0.37166 (11)0.6007 (2)0.0358 (7)
H3C0.52280.38200.56290.043*
H3D0.40740.37940.56530.043*
O70.4971 (2)0.31369 (9)0.7749 (2)0.0407 (6)
C190.5061 (3)0.36282 (14)0.7897 (3)0.0404 (9)
O80.5333 (3)0.38163 (11)0.8774 (2)0.0601 (8)
C200.4830 (3)0.40097 (13)0.7005 (3)0.0368 (8)
H200.54450.42480.70100.044*
C210.3828 (3)0.43479 (14)0.7125 (3)0.0423 (9)
H21A0.38880.44870.78190.051*
H21B0.38130.46450.66580.051*
C220.2789 (3)0.40506 (13)0.6917 (3)0.0390 (9)
C230.2428 (3)0.37308 (15)0.7650 (3)0.0451 (9)
H230.28130.37200.83010.054*
C240.1507 (3)0.34206 (15)0.7456 (3)0.0434 (9)
H240.12780.32100.79690.052*
C250.0942 (3)0.34335 (15)0.6479 (3)0.0428 (9)
C260.1283 (3)0.37557 (17)0.5735 (4)0.0528 (11)
H260.09000.37690.50840.063*
C270.2194 (3)0.40591 (15)0.5956 (4)0.0479 (10)
H270.24150.42750.54470.058*
O90.0065 (2)0.31212 (11)0.6231 (2)0.0548 (7)
H9A−0.00560.29510.67370.082*
N40.3258 (2)0.26513 (11)0.6264 (3)0.0389 (7)
H4A0.28400.29150.64470.047*
H4B0.29910.25350.56370.047*
O100.50697 (18)0.21246 (10)0.6586 (2)0.0396 (6)
C280.4328 (3)0.18951 (14)0.6989 (3)0.0360 (8)
O110.4391 (2)0.14462 (10)0.7387 (2)0.0448 (6)
C290.3300 (3)0.22191 (14)0.7017 (3)0.0394 (9)
H290.33600.23870.76950.047*
C300.2260 (3)0.18813 (15)0.6932 (3)0.0425 (9)
H30A0.23800.15830.73940.051*
H30B0.16930.20930.71660.051*
C310.1882 (3)0.16788 (15)0.5888 (3)0.0462 (10)
C320.0857 (3)0.18068 (18)0.5424 (4)0.0610 (13)
H320.04370.20380.57560.073*
C330.0455 (4)0.16009 (19)0.4494 (4)0.0635 (13)
H33−0.02480.16760.42280.076*
C340.1067 (4)0.1288 (2)0.3951 (4)0.0661 (13)
C350.2115 (4)0.1169 (2)0.4365 (5)0.0740 (16)
H350.25560.09730.39860.089*
C360.2488 (3)0.13418 (18)0.5326 (4)0.0577 (12)
H360.31630.12340.56180.069*
O120.0715 (3)0.10594 (17)0.3024 (3)0.0922 (12)
H120.01080.11640.28280.138*
Ni30.64300 (3)0.280740 (15)0.46105 (4)0.03642 (11)
N50.8050 (2)0.28923 (12)0.4539 (2)0.0386 (7)
H5A0.84110.27790.51330.046*
H5B0.82430.26890.40290.046*
O130.64711 (19)0.36165 (10)0.4467 (2)0.0436 (7)
C370.7391 (3)0.38049 (14)0.4409 (3)0.0422 (9)
O140.7563 (2)0.42996 (10)0.4409 (3)0.0553 (8)
C380.8346 (3)0.34438 (14)0.4360 (3)0.0437 (10)
H380.88760.35430.49370.052*
C390.8885 (3)0.35072 (18)0.3408 (4)0.0565 (11)
H39A0.90920.38740.33470.068*
H39B0.95340.32970.34760.068*
C400.8211 (3)0.33499 (17)0.2459 (4)0.0558 (11)
C410.7431 (4)0.3691 (2)0.1951 (4)0.0692 (14)
H410.73370.40220.22340.083*
C420.6809 (4)0.3557 (2)0.1066 (4)0.0690 (13)
H420.63050.37950.07630.083*
C430.6922 (3)0.30699 (17)0.0614 (3)0.0530 (11)
C440.7645 (4)0.27061 (18)0.1084 (3)0.0602 (12)
H440.76970.23700.08070.072*
C450.8300 (3)0.2852 (2)0.1989 (3)0.0555 (10)
H450.88070.26130.22850.067*
O150.6373 (3)0.29244 (14)−0.0297 (2)0.0757 (9)
H15A0.59680.3163−0.05120.114*
N60.5834 (3)0.26790 (13)0.3064 (3)0.0452 (8)
H6B0.58770.29800.27060.054*
H6C0.62320.24320.27930.054*
O160.48472 (19)0.27843 (10)0.4722 (2)0.0409 (6)
C460.4195 (3)0.26377 (15)0.3922 (3)0.0444 (9)
O170.3229 (2)0.26011 (14)0.3935 (3)0.0698 (9)
C470.4695 (3)0.25007 (15)0.2987 (3)0.0442 (9)
H470.42920.26760.23950.053*
C480.4619 (3)0.18945 (15)0.2818 (3)0.0463 (10)
H48A0.50850.17220.33610.056*
H48B0.38910.17830.28800.056*
C490.4916 (3)0.17103 (14)0.1804 (3)0.0416 (9)
C500.4162 (3)0.17076 (15)0.0914 (3)0.0483 (10)
H500.34660.18200.09610.058*
C510.4432 (3)0.15440 (15)−0.0011 (3)0.0452 (9)
H510.39140.1545−0.05800.054*
C520.5463 (3)0.13756 (15)−0.0125 (3)0.0435 (9)
C530.6209 (3)0.13709 (17)0.0737 (3)0.0522 (11)
H530.69000.12520.06840.063*
C540.5945 (3)0.15397 (16)0.1677 (3)0.0481 (10)
H540.64690.15390.22400.058*
O180.5789 (2)0.12088 (11)−0.1018 (2)0.0493 (7)
H18A0.52880.1227−0.14780.074*
O3M1.0553 (3)−0.02010 (15)0.5593 (3)0.0815 (10)*
C1M0.7126 (3)0.32667 (13)0.6751 (3)0.0384 (9)
H1M10.78590.32000.66520.058*
H1M20.70490.32500.74700.058*
H1M30.69230.36110.64920.058*
O2M0.8596 (5)0.1098 (2)0.2522 (4)0.1298 (17)*
C3M1.0306 (5)0.0038 (3)0.4648 (5)0.0954 (18)*
C2M0.8170 (8)0.0539 (4)0.2325 (7)0.140 (3)*
O4M0.6264 (6)0.4805 (3)0.9009 (6)0.177 (3)*
C4M0.5490 (9)0.5181 (5)0.9249 (9)0.172 (4)*
O5M0.3634 (7)0.3045 (4)1.0147 (6)0.215 (3)*
C5M0.2700 (8)0.3219 (4)1.0342 (7)0.142 (3)*
U11U22U33U12U13U23
Ni10.0304 (2)0.0249 (2)0.0472 (3)−0.00070 (19)−0.0011 (2)−0.0033 (2)
O1M0.0297 (11)0.0255 (12)0.0488 (14)−0.0037 (11)−0.0001 (11)−0.0059 (13)
N10.0360 (15)0.0412 (16)0.053 (2)−0.0085 (15)0.0067 (14)−0.0080 (17)
O10.0336 (12)0.0317 (13)0.0440 (16)−0.0004 (10)−0.0013 (12)−0.0034 (11)
C10.0353 (19)0.0343 (18)0.050 (3)−0.0008 (16)−0.0009 (19)−0.0015 (18)
O20.0377 (14)0.0554 (16)0.0489 (18)−0.0156 (12)−0.0075 (12)0.0015 (13)
C20.0403 (18)0.039 (2)0.048 (2)−0.0038 (16)0.0012 (17)−0.0046 (17)
C30.043 (2)0.053 (2)0.047 (3)−0.0058 (18)0.0026 (19)0.005 (2)
C40.044 (2)0.045 (2)0.052 (3)0.0069 (18)−0.0030 (19)0.0143 (19)
C50.048 (2)0.051 (2)0.066 (3)0.001 (2)−0.001 (2)0.016 (2)
C60.061 (3)0.060 (3)0.065 (3)0.022 (2)0.014 (2)0.008 (2)
C70.062 (3)0.043 (2)0.072 (3)0.015 (2)0.007 (2)0.014 (2)
C80.068 (3)0.039 (2)0.079 (4)0.011 (2)0.018 (3)0.014 (2)
C90.043 (2)0.054 (2)0.075 (3)0.0042 (19)0.016 (2)0.011 (2)
O30.092 (2)0.0403 (16)0.098 (3)0.0149 (17)0.017 (2)−0.0075 (17)
N20.0390 (16)0.0276 (15)0.055 (2)−0.0005 (13)−0.0062 (16)0.0028 (15)
O40.0306 (12)0.0285 (13)0.0505 (16)−0.0010 (10)−0.0018 (11)−0.0048 (12)
C100.0255 (16)0.0301 (17)0.049 (3)−0.0015 (14)−0.0118 (17)−0.0123 (17)
O50.0422 (14)0.0469 (15)0.0460 (18)0.0047 (12)−0.0009 (13)−0.0061 (13)
C110.0377 (19)0.0246 (16)0.057 (3)0.0008 (15)−0.0040 (18)−0.0050 (17)
C120.047 (2)0.0325 (19)0.074 (3)0.0084 (17)−0.009 (2)−0.012 (2)
C130.044 (2)0.0233 (17)0.056 (3)0.0032 (15)−0.004 (2)−0.0103 (17)
C140.045 (2)0.0256 (17)0.069 (3)0.0033 (16)0.003 (2)−0.0084 (18)
C150.039 (2)0.0322 (19)0.067 (3)0.0031 (16)−0.009 (2)−0.0080 (19)
C160.046 (2)0.0349 (19)0.061 (3)0.0006 (17)0.001 (2)−0.0070 (19)
C170.056 (2)0.0332 (19)0.051 (3)−0.0023 (18)0.001 (2)−0.0068 (18)
C180.049 (2)0.042 (2)0.055 (3)0.0013 (18)−0.013 (2)−0.004 (2)
O60.0456 (15)0.0383 (14)0.079 (2)−0.0074 (12)−0.0034 (15)−0.0070 (14)
Ni20.0298 (2)0.0241 (2)0.0525 (3)−0.00098 (18)0.0001 (2)−0.0018 (2)
N30.0310 (15)0.0288 (15)0.046 (2)0.0016 (12)−0.0017 (14)0.0017 (14)
O70.0397 (13)0.0277 (12)0.0528 (17)−0.0013 (10)−0.0032 (12)0.0049 (11)
C190.0345 (18)0.035 (2)0.049 (3)−0.0052 (15)−0.0072 (18)0.0006 (18)
O80.087 (2)0.0409 (14)0.0453 (18)−0.0113 (15)−0.0201 (16)−0.0072 (14)
C200.0369 (19)0.0251 (16)0.047 (2)−0.0045 (15)−0.0018 (17)−0.0022 (16)
C210.040 (2)0.0293 (17)0.055 (3)−0.0007 (15)−0.0047 (18)−0.0007 (17)
C220.0329 (18)0.0289 (17)0.055 (3)0.0049 (15)0.0039 (18)0.0020 (17)
C230.038 (2)0.049 (2)0.047 (3)−0.0048 (17)0.0014 (19)0.0023 (19)
C240.0348 (18)0.048 (2)0.046 (2)−0.0067 (17)0.0018 (18)0.0051 (18)
C250.0280 (17)0.046 (2)0.054 (3)0.0023 (16)0.0039 (18)0.0057 (19)
C260.036 (2)0.054 (2)0.065 (3)0.0026 (18)−0.009 (2)0.025 (2)
C270.038 (2)0.041 (2)0.063 (3)0.0026 (17)0.001 (2)0.017 (2)
O90.0318 (13)0.0611 (17)0.069 (2)−0.0089 (12)−0.0054 (13)0.0149 (15)
N40.0329 (15)0.0278 (14)0.056 (2)−0.0001 (12)0.0029 (14)−0.0076 (14)
O100.0294 (11)0.0236 (11)0.0647 (18)−0.0029 (11)0.0007 (12)0.0042 (13)
C280.0399 (19)0.0334 (18)0.032 (2)−0.0048 (15)−0.0058 (16)−0.0072 (16)
O110.0424 (14)0.0324 (13)0.0554 (18)−0.0034 (11)−0.0123 (13)0.0062 (12)
C290.0352 (18)0.041 (2)0.041 (2)−0.0084 (15)−0.0010 (16)−0.0060 (16)
C300.0379 (19)0.0405 (19)0.048 (3)−0.0036 (16)−0.0008 (18)0.0030 (18)
C310.038 (2)0.0355 (19)0.063 (3)−0.0091 (17)−0.001 (2)−0.0093 (19)
C320.049 (2)0.059 (3)0.071 (3)0.015 (2)−0.010 (2)−0.023 (2)
C330.051 (2)0.057 (3)0.082 (4)0.006 (2)0.001 (3)−0.014 (3)
C340.060 (3)0.068 (3)0.067 (3)0.003 (2)−0.009 (2)−0.021 (3)
C350.050 (3)0.064 (3)0.106 (4)0.004 (2)0.001 (3)−0.040 (3)
C360.033 (2)0.059 (3)0.077 (3)0.0037 (19)−0.011 (2)−0.029 (2)
O120.081 (3)0.101 (3)0.090 (3)0.010 (2)−0.006 (2)−0.033 (2)
Ni30.0310 (2)0.0278 (2)0.0490 (3)−0.00175 (18)−0.0016 (2)−0.0004 (2)
N50.0376 (15)0.0345 (15)0.0420 (17)0.0044 (15)−0.0027 (13)−0.0044 (15)
O130.0316 (13)0.0301 (13)0.067 (2)−0.0019 (11)−0.0009 (13)0.0051 (13)
C370.044 (2)0.0297 (18)0.052 (3)−0.0033 (16)0.0003 (19)0.0033 (17)
O140.0427 (15)0.0307 (13)0.091 (2)−0.0059 (12)0.0022 (15)0.0084 (14)
C380.0322 (18)0.0358 (19)0.064 (3)−0.0066 (15)0.0073 (19)−0.0021 (18)
C390.051 (2)0.051 (2)0.068 (3)−0.008 (2)0.008 (2)−0.003 (2)
C400.040 (2)0.053 (3)0.074 (3)−0.0022 (19)0.009 (2)0.008 (2)
C410.077 (3)0.060 (3)0.068 (4)0.013 (3)−0.004 (3)0.011 (3)
C420.078 (3)0.060 (3)0.064 (3)0.022 (3)−0.011 (3)0.004 (3)
C430.052 (2)0.063 (3)0.040 (2)0.010 (2)−0.007 (2)0.008 (2)
C440.073 (3)0.055 (3)0.052 (3)0.023 (2)0.003 (2)−0.001 (2)
C450.054 (2)0.062 (3)0.049 (2)0.008 (2)0.0030 (19)0.004 (2)
O150.084 (2)0.072 (2)0.065 (2)0.028 (2)−0.0147 (17)−0.0137 (19)
N60.0452 (17)0.0402 (17)0.048 (2)−0.0112 (14)−0.0028 (15)0.0045 (15)
O160.0355 (12)0.0340 (14)0.0521 (16)−0.0046 (12)0.0008 (12)−0.0027 (13)
C460.0300 (19)0.045 (2)0.054 (3)−0.0014 (16)−0.0109 (18)0.0026 (19)
O170.0342 (16)0.100 (3)0.071 (2)−0.0017 (15)−0.0130 (14)0.0005 (19)
C470.042 (2)0.044 (2)0.043 (3)−0.0003 (17)−0.0103 (18)0.0034 (18)
C480.043 (2)0.043 (2)0.050 (3)−0.0106 (17)−0.0079 (19)0.0107 (19)
C490.042 (2)0.0322 (18)0.048 (2)−0.0059 (16)−0.0057 (18)0.0027 (17)
C500.0361 (19)0.045 (2)0.061 (3)−0.0011 (17)−0.0061 (19)0.000 (2)
C510.040 (2)0.051 (2)0.040 (2)−0.0015 (17)−0.0104 (18)0.0021 (19)
C520.043 (2)0.043 (2)0.044 (2)−0.0086 (17)0.0039 (19)0.0094 (18)
C530.041 (2)0.056 (2)0.056 (3)−0.0042 (19)−0.009 (2)0.019 (2)
C540.039 (2)0.059 (3)0.044 (3)−0.0040 (19)−0.0073 (19)0.007 (2)
O180.0405 (14)0.0566 (16)0.0477 (18)−0.0053 (13)−0.0080 (13)0.0044 (14)
C1M0.0333 (17)0.0302 (18)0.051 (2)−0.0019 (15)0.0035 (17)−0.0046 (17)
Ni1—O12.051 (2)C27—H270.9300
Ni1—N12.060 (3)O9—H9A0.8200
Ni1—O42.067 (3)N4—C291.471 (5)
Ni1—N22.089 (3)N4—H4A0.9000
Ni1—O1M2.089 (3)N4—H4B0.9000
Ni1—O102.098 (2)O10—C281.265 (4)
O1M—C1M1.413 (4)C28—O111.250 (4)
O1M—Ni22.067 (2)C28—C291.535 (5)
O1M—Ni32.109 (2)C29—C301.556 (5)
N1—C21.490 (5)C29—H290.9800
N1—H1A0.9000C30—C311.486 (6)
N1—H1B0.9000C30—H30A0.9700
O1—C11.272 (5)C30—H30B0.9700
C1—O21.268 (4)C31—C321.397 (6)
C1—C21.504 (5)C31—C361.409 (6)
C2—C31.544 (5)C32—C331.367 (6)
C2—H20.9800C32—H320.9300
C3—C41.506 (6)C33—C341.362 (6)
C3—H3A0.9700C33—H330.9300
C3—H3B0.9700C34—O121.371 (6)
C4—C91.360 (6)C34—C351.397 (7)
C4—C51.415 (6)C35—C361.363 (7)
C5—C61.336 (6)C35—H350.9300
C5—H50.9300C36—H360.9300
C6—C71.421 (6)O12—H120.8200
C6—H60.9300Ni3—O162.013 (2)
C7—O31.368 (5)Ni3—O132.060 (3)
C7—C81.392 (6)Ni3—N52.060 (3)
C8—C91.392 (6)Ni3—N62.102 (3)
C8—H80.9300N5—C381.472 (5)
C9—H90.9300N5—H5A0.9000
O3—H30.8200N5—H5B0.9000
N2—C111.473 (5)O13—C371.261 (4)
N2—H2A0.9000C37—O141.272 (4)
N2—H2B0.9000C37—C381.517 (5)
O4—C101.256 (4)C38—C391.497 (6)
O4—Ni32.080 (2)C38—H380.9800
C10—O51.251 (4)C39—C401.475 (7)
C10—C111.541 (5)C39—H39A0.9700
C11—C121.538 (5)C39—H39B0.9700
C11—H110.9800C40—C411.413 (7)
C12—C131.488 (5)C40—C451.414 (7)
C12—H12A0.9700C41—C421.363 (7)
C12—H12B0.9700C41—H410.9300
C13—C181.361 (6)C42—C431.383 (7)
C13—C141.381 (6)C42—H420.9300
C14—C151.382 (5)C43—O151.358 (5)
C14—H140.9300C43—C441.387 (6)
C15—C161.392 (6)C44—C451.411 (6)
C15—H150.9300C44—H440.9300
C16—O61.356 (5)C45—H450.9300
C16—C171.364 (6)O15—H15A0.8200
C17—C181.393 (6)N6—C471.494 (5)
C17—H170.9300N6—H6B0.9000
C18—H180.9300N6—H6C0.9000
O6—H6A0.8200O16—C461.307 (5)
Ni2—O72.030 (3)C46—O171.219 (4)
Ni2—O162.036 (3)C46—C471.483 (6)
Ni2—O102.056 (3)C47—C481.553 (5)
Ni2—N32.069 (3)C47—H470.9800
Ni2—N42.074 (3)C48—C491.497 (6)
N3—C201.496 (5)C48—H48A0.9700
N3—H3C0.9000C48—H48B0.9700
N3—H3D0.9000C49—C541.392 (5)
O7—C191.263 (4)C49—C501.414 (5)
C19—O81.255 (5)C50—C511.361 (6)
C19—C201.518 (5)C50—H500.9300
C20—C211.546 (5)C51—C521.390 (5)
C20—H200.9800C51—H510.9300
C21—C221.505 (5)C52—O181.352 (5)
C21—H21A0.9700C52—C531.381 (6)
C21—H21B0.9700C53—C541.381 (6)
C22—C231.374 (5)C53—H530.9300
C22—C271.387 (6)C54—H540.9300
C23—C241.398 (5)O18—H18A0.8200
C23—H230.9300O3M—C3M1.382 (7)
C24—C251.390 (6)C1M—H1M10.9600
C24—H240.9300C1M—H1M20.9600
C25—O91.365 (5)C1M—H1M30.9600
C25—C261.378 (6)O2M—C2M1.526 (10)
C26—C271.382 (6)O4M—C4M1.423 (12)
C26—H260.9300O5M—C5M1.306 (11)
O1—Ni1—N182.06 (11)C25—C26—H26120.0
O1—Ni1—O491.83 (10)C27—C26—H26120.0
N1—Ni1—O4171.72 (11)C26—C27—C22121.8 (4)
O1—Ni1—N292.38 (11)C26—C27—H27119.1
N1—Ni1—N297.58 (14)C22—C27—H27119.1
O4—Ni1—N277.00 (12)C25—O9—H9A109.5
O1—Ni1—O1M88.80 (9)C29—N4—Ni2106.4 (2)
N1—Ni1—O1M103.90 (12)C29—N4—H4A110.5
O4—Ni1—O1M81.44 (9)Ni2—N4—H4A110.5
N2—Ni1—O1M158.43 (11)C29—N4—H4B110.5
O1—Ni1—O10167.32 (10)Ni2—N4—H4B110.5
N1—Ni1—O1095.69 (11)H4A—N4—H4B108.6
O4—Ni1—O1091.47 (10)C28—O10—Ni2115.7 (2)
N2—Ni1—O10100.29 (11)C28—O10—Ni1139.6 (2)
O1M—Ni1—O1079.59 (9)Ni2—O10—Ni199.64 (10)
C1M—O1M—Ni2119.9 (2)O11—C28—O10125.3 (3)
C1M—O1M—Ni1117.8 (2)O11—C28—C29119.3 (3)
Ni2—O1M—Ni199.59 (10)O10—C28—C29115.3 (3)
C1M—O1M—Ni3119.8 (2)N4—C29—C28110.2 (3)
Ni2—O1M—Ni397.17 (10)N4—C29—C30113.5 (3)
Ni1—O1M—Ni398.01 (10)C28—C29—C30114.0 (3)
C2—N1—Ni1111.6 (2)N4—C29—H29106.2
C2—N1—H1A109.3C28—C29—H29106.2
Ni1—N1—H1A109.3C30—C29—H29106.2
C2—N1—H1B109.3C31—C30—C29115.5 (3)
Ni1—N1—H1B109.3C31—C30—H30A108.4
H1A—N1—H1B108.0C29—C30—H30A108.4
C1—O1—Ni1114.0 (2)C31—C30—H30B108.4
O2—C1—O1122.4 (4)C29—C30—H30B108.4
O2—C1—C2117.0 (4)H30A—C30—H30B107.5
O1—C1—C2120.6 (3)C32—C31—C36116.2 (4)
N1—C2—C1110.1 (3)C32—C31—C30120.0 (4)
N1—C2—C3112.8 (3)C36—C31—C30123.8 (4)
C1—C2—C3110.8 (3)C33—C32—C31121.7 (4)
N1—C2—H2107.6C33—C32—H32119.2
C1—C2—H2107.6C31—C32—H32119.2
C3—C2—H2107.6C34—C33—C32121.0 (4)
C4—C3—C2116.2 (3)C34—C33—H33119.5
C4—C3—H3A108.2C32—C33—H33119.5
C2—C3—H3A108.2C33—C34—O12124.4 (4)
C4—C3—H3B108.2C33—C34—C35119.1 (5)
C2—C3—H3B108.2O12—C34—C35116.4 (4)
H3A—C3—H3B107.4C36—C35—C34119.8 (4)
C9—C4—C5116.6 (4)C36—C35—H35120.1
C9—C4—C3121.6 (4)C34—C35—H35120.1
C5—C4—C3121.7 (4)C35—C36—C31121.9 (4)
C6—C5—C4123.3 (4)C35—C36—H36119.1
C6—C5—H5118.4C31—C36—H36119.1
C4—C5—H5118.4C34—O12—H12109.5
C5—C6—C7119.6 (4)O16—Ni3—O1394.09 (10)
C5—C6—H6120.2O16—Ni3—N5175.41 (12)
C7—C6—H6120.2O13—Ni3—N581.74 (11)
O3—C7—C8118.1 (4)O16—Ni3—O491.53 (10)
O3—C7—C6123.8 (4)O13—Ni3—O4168.31 (11)
C8—C7—C6118.1 (4)N5—Ni3—O492.24 (11)
C7—C8—C9120.1 (4)O16—Ni3—N679.74 (12)
C7—C8—H8119.9O13—Ni3—N694.34 (12)
C9—C8—H8119.9N5—Ni3—N6102.40 (12)
C4—C9—C8122.2 (4)O4—Ni3—N696.75 (11)
C4—C9—H9118.9O16—Ni3—O1M80.37 (9)
C8—C9—H9118.9O13—Ni3—O1M90.18 (11)
C7—O3—H3109.5N5—Ni3—O1M97.66 (10)
C11—N2—Ni1106.6 (2)O4—Ni3—O1M80.65 (10)
C11—N2—H2A110.4N6—Ni3—O1M159.86 (10)
Ni1—N2—H2A110.4C38—N5—Ni3112.1 (2)
C11—N2—H2B110.4C38—N5—H5A109.2
Ni1—N2—H2B110.4Ni3—N5—H5A109.2
H2A—N2—H2B108.6C38—N5—H5B109.2
C10—O4—Ni1113.5 (2)Ni3—N5—H5B109.2
C10—O4—Ni3130.1 (2)H5A—N5—H5B107.9
Ni1—O4—Ni399.65 (10)C37—O13—Ni3114.5 (2)
O5—C10—O4124.9 (4)O13—C37—O14122.0 (3)
O5—C10—C11119.2 (3)O13—C37—C38120.7 (3)
O4—C10—C11115.8 (3)O14—C37—C38117.3 (3)
N2—C11—C12112.5 (3)N5—C38—C39112.5 (3)
N2—C11—C10109.0 (3)N5—C38—C37110.4 (3)
C12—C11—C10114.6 (3)C39—C38—C37114.1 (4)
N2—C11—H11106.7N5—C38—H38106.4
C12—C11—H11106.7C39—C38—H38106.4
C10—C11—H11106.7C37—C38—H38106.4
C13—C12—C11114.2 (3)C40—C39—C38113.7 (4)
C13—C12—H12A108.7C40—C39—H39A108.8
C11—C12—H12A108.7C38—C39—H39A108.8
C13—C12—H12B108.7C40—C39—H39B108.8
C11—C12—H12B108.7C38—C39—H39B108.8
H12A—C12—H12B107.6H39A—C39—H39B107.7
C18—C13—C14116.2 (4)C41—C40—C45115.2 (5)
C18—C13—C12120.5 (4)C41—C40—C39122.0 (4)
C14—C13—C12123.3 (4)C45—C40—C39122.8 (4)
C13—C14—C15123.6 (4)C42—C41—C40123.1 (5)
C13—C14—H14118.2C42—C41—H41118.5
C15—C14—H14118.2C40—C41—H41118.5
C14—C15—C16118.2 (4)C41—C42—C43120.6 (5)
C14—C15—H15120.9C41—C42—H42119.7
C16—C15—H15120.9C43—C42—H42119.7
O6—C16—C17123.5 (4)O15—C43—C42123.4 (4)
O6—C16—C15117.0 (4)O15—C43—C44116.7 (4)
C17—C16—C15119.4 (4)C42—C43—C44119.9 (4)
C16—C17—C18120.2 (4)C43—C44—C45119.1 (4)
C16—C17—H17119.9C43—C44—H44120.5
C18—C17—H17119.9C45—C44—H44120.5
C13—C18—C17122.2 (4)C44—C45—C40122.1 (4)
C13—C18—H18118.9C44—C45—H45118.9
C17—C18—H18118.9C40—C45—H45118.9
C16—O6—H6A109.5C43—O15—H15A109.5
O7—Ni2—O16170.42 (10)C47—N6—Ni3110.1 (2)
O7—Ni2—O1094.22 (10)C47—N6—H6B109.6
O16—Ni2—O1092.13 (11)Ni3—N6—H6B109.6
O7—Ni2—O1M93.04 (10)C47—N6—H6C109.6
O16—Ni2—O1M80.85 (9)Ni3—N6—H6C109.6
O10—Ni2—O1M81.11 (9)H6B—N6—H6C108.2
O7—Ni2—N382.47 (11)C46—O16—Ni3118.9 (2)
O16—Ni2—N390.61 (12)C46—O16—Ni2139.0 (2)
O10—Ni2—N3174.38 (12)Ni3—O16—Ni2101.34 (11)
O1M—Ni2—N394.50 (11)O17—C46—O16122.8 (4)
O7—Ni2—N493.59 (11)O17—C46—C47120.9 (4)
O16—Ni2—N494.65 (11)O16—C46—C47116.3 (3)
O10—Ni2—N479.10 (10)C46—C47—N6111.6 (3)
O1M—Ni2—N4159.52 (10)C46—C47—C48108.9 (3)
N3—Ni2—N4105.56 (11)N6—C47—C48110.6 (3)
C20—N3—Ni2110.8 (2)C46—C47—H47108.6
C20—N3—H3C109.5N6—C47—H47108.6
Ni2—N3—H3C109.5C48—C47—H47108.6
C20—N3—H3D109.5C49—C48—C47114.6 (3)
Ni2—N3—H3D109.5C49—C48—H48A108.6
H3C—N3—H3D108.1C47—C48—H48A108.6
C19—O7—Ni2115.0 (3)C49—C48—H48B108.6
O8—C19—O7121.6 (4)C47—C48—H48B108.6
O8—C19—C20118.1 (3)H48A—C48—H48B107.6
O7—C19—C20120.3 (4)C54—C49—C50116.2 (4)
N3—C20—C19110.3 (3)C54—C49—C48122.4 (4)
N3—C20—C21111.5 (3)C50—C49—C48121.5 (4)
C19—C20—C21111.0 (3)C51—C50—C49121.6 (4)
N3—C20—H20108.0C51—C50—H50119.2
C19—C20—H20108.0C49—C50—H50119.2
C21—C20—H20108.0C50—C51—C52121.5 (4)
C22—C21—C20113.8 (3)C50—C51—H51119.3
C22—C21—H21A108.8C52—C51—H51119.3
C20—C21—H21A108.8O18—C52—C53117.4 (4)
C22—C21—H21B108.8O18—C52—C51124.8 (4)
C20—C21—H21B108.8C53—C52—C51117.8 (4)
H21A—C21—H21B107.7C54—C53—C52121.1 (4)
C23—C22—C27117.2 (3)C54—C53—H53119.5
C23—C22—C21121.2 (4)C52—C53—H53119.5
C27—C22—C21121.4 (3)C53—C54—C49121.8 (4)
C22—C23—C24122.6 (4)C53—C54—H54119.1
C22—C23—H23118.7C49—C54—H54119.1
C24—C23—H23118.7C52—O18—H18A109.5
C25—C24—C23118.5 (4)O1M—C1M—H1M1109.5
C25—C24—H24120.7O1M—C1M—H1M2109.5
C23—C24—H24120.7H1M1—C1M—H1M2109.5
O9—C25—C26119.0 (4)O1M—C1M—H1M3109.5
O9—C25—C24121.2 (3)H1M1—C1M—H1M3109.5
C26—C25—C24119.8 (4)H1M2—C1M—H1M3109.5
C25—C26—C27120.0 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O15i0.902.263.082 (4)153
N1—H1B···O18i0.902.203.042 (4)157
O3—H3···O3M0.821.792.601 (5)170
O6—H6A···O14ii0.821.882.685 (4)166
N3—H3C···O130.902.363.174 (4)150
O9—H9A···O2iii0.821.782.597 (4)173
N4—H4B···O170.902.293.050 (5)142
O12—H12···O2Miii0.821.902.669 (7)155
N5—H5A···O10.902.463.251 (4)146
N5—H5A···O9iv0.902.543.216 (4)133
O15—H15A···O8v0.822.022.815 (4)164
O15—H15A···O7v0.822.472.983 (4)122
O18—H18A···O11v0.821.842.638 (4)163
C1M—H1M1···O10.962.523.042 (4)114
C30—H30A···O110.972.552.893 (5)101
C38—H38···O9iv0.982.383.178 (5)138
C54—H54···O50.932.423.338 (5)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O15i 0.902.263.082 (4)153
N1—H1B⋯O18i 0.902.203.042 (4)157
O3—H3⋯O3M 0.821.792.601 (5)170
O6—H6A⋯O14ii 0.821.882.685 (4)166
N3—H3C⋯O130.902.363.174 (4)150
O9—H9A⋯O2iii 0.821.782.597 (4)173
N4—H4B⋯O170.902.293.050 (5)142
O12—H12⋯O2M iii 0.821.902.669 (7)155
N5—H5A⋯O10.902.463.251 (4)146
N5—H5A⋯O9iv 0.902.543.216 (4)133
O15—H15A⋯O8v 0.822.022.815 (4)164
O15—H15A⋯O7v 0.822.472.983 (4)122
O18—H18A⋯O11v 0.821.842.638 (4)163
C1M—H1M1⋯O10.962.523.042 (4)114
C30—H30A⋯O110.972.552.893 (5)101
C38—H38⋯O9iv 0.982.383.178 (5)138
C54—H54⋯O50.932.423.338 (5)167

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  6 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  Spin disorder on a triangular lattice.

Authors:  Satoru Nakatsuji; Yusuke Nambu; Hiroshi Tonomura; Osamu Sakai; Seth Jonas; Collin Broholm; Hirokazu Tsunetsugu; Yiming Qiu; Yoshiteru Maeno
Journal:  Science       Date:  2005-09-09       Impact factor: 47.728

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Synthesis, crystal structure, spectroscopic, magnetic, theoretical, and microbiological studies of a nickel(II) complex of L-tyrosine and imidazole, [Ni(Im)2(L-tyr)2]·4H2O.

Authors:  Agnieszka Wojciechowska; Marek Daszkiewicz; Zbigniew Staszak; Agnieszka Trusz-Zdybek; Alina Bieńko; Andrzej Ozarowski
Journal:  Inorg Chem       Date:  2011-10-19       Impact factor: 5.165

5.  Synthesis, structure and properties of [Zn(L-Tyr)₂(bpy)]₂⋅3H₂O·CH₃OH complex: theoretical, spectroscopic and microbiological studies.

Authors:  Agnieszka Wojciechowska; Anna Gągor; Rafał Wysokiński; Agnieszka Trusz-Zdybek
Journal:  J Inorg Biochem       Date:  2012-09-13       Impact factor: 4.155

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.