Literature DB >> 23723772

(3,3'-{(1E,1'E)-1,1'-[Ethane-1,2-diylbis(azan-1-yl-1-yl-idene-κN)]bis-(ethan-1-yl-1-yl-idene)}di-pyrazine 1-oxide-κN (4))bis-(nitrato-κO)nickel(II) monohydrate.

Mohammed A S Omer1, Jia-Cheng Liu.   

Abstract

In the title complex, [Ni(NO3)2(C14H16N6O2)]·H2O, the Ni(II) atom, lying on a twofold rotation axis, is coordinated by a n class="Species">tetra-dentate 3,3'-{(1E,1'E)-1,1'-[ethane-1,2-diylbis(azan-1-yl-1-yl-idene)]bis-(ethan-1-yl-1-yl-idene)}di-pyrazine 1-oxide ligand and two mutually trans monodentate nitrate anions in a distorted o-cta-hedral geometry. The lattice water mol-ecule is located on a twofold rotation axis. The complex mol-ecules are linked by the water mol-ecules through O-H⋯O hydrogen bonds into a chain along [001]. Further C-H⋯O hydrogen bonds lead to the formation of a three-dimensional network.

Entities:  

Year:  2013        PMID: 23723772      PMCID: PMC3647806          DOI: 10.1107/S1600536813009355

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to complexes with heterocyclic aromatic N-oxide ligands, see: Chupakhin et al. (2011 ▶); Karayannis et al. (1973 ▶); Nizhnik et al. (2008 ▶); Sarma et al. (2010 ▶). For related structures, see: Banerjee et al. (2004 ▶); Padhi & Manivannan (2007 ▶).

Experimental

Crystal data

[Ni(NO3)2(C14H16N6O2)]·H2O M = 501.05 Monoclinic, a = 16.993 (5) Å b = 16.218 (5) Å c = 7.754 (2) Å β = 113.427 (3)° V = 1960.8 (10) Å3 Z = 4 Mo Kα radiation μ = 1.06 mm−1 T = 293 K 0.23 × 0.21 × 0.19 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.793, T max = 0.824 6930 measured reflections 1828 independent reflections 1515 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.070 S = 1.04 1828 reflections 151 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813009355/hy2621sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813009355/hy2621Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(NO3)2(C14H16N6O2)]·H2OF(000) = 1032
Mr = 501.05Dx = 1.697 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2097 reflections
a = 16.993 (5) Åθ = 2.5–23.4°
b = 16.218 (5) ŵ = 1.06 mm1
c = 7.754 (2) ÅT = 293 K
β = 113.427 (3)°Block, brown
V = 1960.8 (10) Å30.23 × 0.21 × 0.19 mm
Z = 4
Bruker APEXII CCD diffractometer1828 independent reflections
Radiation source: fine-focus sealed tube1515 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.034
φ and ω scansθmax = 25.5°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −20→20
Tmin = 0.793, Tmax = 0.824k = −19→18
6930 measured reflectionsl = −9→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.070H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0282P)2 + 1.9388P] where P = (Fo2 + 2Fc2)/3
1828 reflections(Δ/σ)max < 0.001
151 parametersΔρmax = 0.26 e Å3
1 restraintΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.00000.22687 (3)0.25000.02616 (14)
C10.11963 (16)0.08324 (15)0.4745 (4)0.0364 (6)
H10.07980.04640.39470.044*
C20.19290 (17)0.05229 (17)0.6107 (4)0.0461 (7)
H20.2022−0.00430.62140.055*
C30.23627 (16)0.18666 (15)0.7095 (3)0.0352 (6)
H3A0.27600.22380.78840.042*
C40.16163 (14)0.21473 (14)0.5717 (3)0.0282 (5)
C50.13925 (15)0.30501 (15)0.5473 (3)0.0308 (5)
C60.19245 (18)0.36564 (17)0.6900 (4)0.0528 (8)
H6A0.17070.42020.65150.079*
H6B0.25070.36250.70150.079*
H6C0.19020.35330.80910.079*
C70.03112 (17)0.40247 (15)0.3526 (4)0.0397 (6)
H7A0.07460.44440.37310.048*
H7B0.00060.41500.43190.048*
H1W0.961 (7)0.337 (9)0.670 (19)0.65 (10)*
N10.10253 (12)0.16371 (12)0.4506 (3)0.0289 (5)
N20.25192 (14)0.10433 (13)0.7301 (3)0.0437 (6)
N30.07187 (12)0.32112 (11)0.4021 (3)0.0302 (5)
N4−0.08220 (14)0.16354 (17)0.4974 (3)0.0462 (6)
O10.32056 (13)0.07731 (13)0.8616 (3)0.0739 (7)
O2−0.06595 (11)0.22970 (11)0.4291 (2)0.0413 (4)
O3−0.11896 (19)0.16980 (18)0.6043 (4)0.0997 (10)
O4−0.06439 (14)0.09594 (13)0.4506 (3)0.0603 (6)
O51.00000.3575 (3)0.75000.0993 (13)
U11U22U33U12U13U23
Ni10.0253 (2)0.0206 (2)0.0280 (2)0.0000.00583 (18)0.000
C10.0348 (14)0.0261 (14)0.0407 (14)−0.0021 (11)0.0071 (12)0.0025 (11)
C20.0413 (16)0.0265 (14)0.0576 (18)0.0033 (12)0.0059 (14)0.0085 (13)
C30.0284 (14)0.0325 (14)0.0376 (14)−0.0053 (11)0.0055 (11)0.0030 (11)
C40.0262 (12)0.0287 (13)0.0288 (12)−0.0019 (10)0.0100 (10)0.0012 (10)
C50.0292 (14)0.0282 (13)0.0336 (13)−0.0052 (11)0.0110 (11)−0.0025 (10)
C60.0490 (18)0.0387 (17)0.0501 (17)−0.0044 (14)−0.0021 (14)−0.0097 (14)
C70.0454 (17)0.0208 (13)0.0458 (15)0.0011 (11)0.0106 (13)−0.0029 (11)
N10.0278 (11)0.0226 (10)0.0336 (11)−0.0015 (9)0.0092 (9)0.0011 (9)
N20.0331 (13)0.0363 (13)0.0476 (13)0.0022 (10)0.0011 (11)0.0110 (10)
N30.0330 (12)0.0218 (11)0.0330 (11)−0.0011 (9)0.0102 (10)−0.0021 (9)
N40.0339 (13)0.0634 (17)0.0408 (13)−0.0025 (12)0.0144 (11)0.0077 (12)
O10.0487 (13)0.0509 (14)0.0815 (16)0.0081 (11)−0.0169 (12)0.0172 (12)
O20.0453 (11)0.0378 (10)0.0453 (10)0.0033 (9)0.0226 (9)0.0051 (9)
O30.118 (2)0.125 (2)0.100 (2)0.0031 (19)0.090 (2)0.0153 (17)
O40.0714 (15)0.0405 (12)0.0721 (15)−0.0098 (11)0.0319 (12)0.0052 (11)
O50.126 (4)0.113 (3)0.068 (2)0.0000.047 (2)0.000
Ni1—N32.0183 (19)C5—C61.488 (3)
Ni1—N12.0855 (19)C6—H6A0.9600
Ni1—O22.1032 (17)C6—H6B0.9600
C1—N11.334 (3)C6—H6C0.9600
C1—C21.368 (3)C7—N31.468 (3)
C1—H10.9300C7—C7i1.521 (5)
C2—N21.355 (3)C7—H7A0.9700
C2—H20.9300C7—H7B0.9700
C3—N21.358 (3)N2—O11.283 (3)
C3—C41.371 (3)N4—O31.224 (3)
C3—H3A0.9300N4—O41.230 (3)
C4—N11.351 (3)N4—O21.275 (3)
C4—C51.506 (3)O5—H1W0.780 (5)
C5—N31.274 (3)
N3—Ni1—N3i81.53 (11)N3—C5—C4113.8 (2)
N3—Ni1—N1i160.01 (8)C6—C5—C4120.1 (2)
N3i—Ni1—N1i78.71 (8)C5—C6—H6A109.5
N3—Ni1—N178.71 (8)C5—C6—H6B109.5
N3i—Ni1—N1160.01 (8)H6A—C6—H6B109.5
N1i—Ni1—N1121.17 (11)C5—C6—H6C109.5
N3—Ni1—O2i90.67 (7)H6A—C6—H6C109.5
N3i—Ni1—O2i87.44 (7)H6B—C6—H6C109.5
N1i—Ni1—O2i91.42 (7)N3—C7—C7i109.44 (14)
N1—Ni1—O2i89.81 (7)N3—C7—H7A109.8
N3—Ni1—O287.44 (7)C7i—C7—H7A109.8
N3i—Ni1—O290.67 (7)N3—C7—H7B109.8
N1i—Ni1—O289.81 (7)C7i—C7—H7B109.8
N1—Ni1—O291.42 (7)H7A—C7—H7B108.2
O2i—Ni1—O2177.50 (10)C1—N1—C4116.2 (2)
N1—C1—C2123.2 (2)C1—N1—Ni1130.95 (16)
N1—C1—H1118.4C4—N1—Ni1112.79 (15)
C2—C1—H1118.4O1—N2—C2121.5 (2)
N2—C2—C1119.9 (2)O1—N2—C3120.2 (2)
N2—C2—H2120.1C2—N2—C3118.3 (2)
C1—C2—H2120.1C5—N3—C7125.5 (2)
N2—C3—C4119.7 (2)C5—N3—Ni1118.92 (16)
N2—C3—H3A120.2C7—N3—Ni1114.52 (15)
C4—C3—H3A120.2O3—N4—O4121.7 (3)
N1—C4—C3122.7 (2)O3—N4—O2117.7 (3)
N1—C4—C5115.32 (19)O4—N4—O2120.6 (2)
C3—C4—C5122.0 (2)N4—O2—Ni1121.09 (16)
N3—C5—C6126.1 (2)
N1—C1—C2—N20.4 (4)C4—C3—N2—O1−178.2 (2)
N2—C3—C4—N1−1.4 (4)C4—C3—N2—C20.8 (4)
N2—C3—C4—C5177.5 (2)C6—C5—N3—C7−3.4 (4)
N1—C4—C5—N3−7.4 (3)C4—C5—N3—C7174.4 (2)
C3—C4—C5—N3173.6 (2)C6—C5—N3—Ni1−170.6 (2)
N1—C4—C5—C6170.5 (2)C4—C5—N3—Ni17.1 (3)
C3—C4—C5—C6−8.5 (3)C7i—C7—N3—C5164.2 (3)
C2—C1—N1—C4−1.0 (4)C7i—C7—N3—Ni1−28.1 (3)
C2—C1—N1—Ni1176.96 (19)N3i—Ni1—N3—C5179.1 (2)
C3—C4—N1—C11.4 (3)N1i—Ni1—N3—C5170.39 (19)
C5—C4—N1—C1−177.5 (2)N1—Ni1—N3—C5−3.94 (17)
C3—C4—N1—Ni1−176.86 (18)O2i—Ni1—N3—C5−93.61 (18)
C5—C4—N1—Ni14.2 (2)O2—Ni1—N3—C588.02 (18)
N3—Ni1—N1—C1−178.5 (2)N3i—Ni1—N3—C710.46 (13)
N3i—Ni1—N1—C1−169.8 (2)N1i—Ni1—N3—C71.8 (3)
N1i—Ni1—N1—C13.71 (19)N1—Ni1—N3—C7−172.56 (17)
O2i—Ni1—N1—C1−87.8 (2)O2i—Ni1—N3—C797.77 (17)
O2—Ni1—N1—C194.4 (2)O2—Ni1—N3—C7−80.60 (17)
N3—Ni1—N1—C4−0.56 (15)O3—N4—O2—Ni1178.3 (2)
N3i—Ni1—N1—C48.2 (3)O4—N4—O2—Ni1−4.6 (3)
N1i—Ni1—N1—C4−178.30 (17)N3—Ni1—O2—N4−134.41 (18)
O2i—Ni1—N1—C490.16 (15)N3i—Ni1—O2—N4144.10 (18)
O2—Ni1—N1—C4−87.66 (15)N1i—Ni1—O2—N465.39 (18)
C1—C2—N2—O1178.7 (3)N1—Ni1—O2—N4−55.78 (18)
C1—C2—N2—C3−0.3 (4)
D—H···AD—HH···AD···AD—H···A
O5—H1W···O2ii0.78 (12)2.46 (14)3.086 (4)139 (14)
C3—H3A···O2iii0.932.583.389 (3)146
C6—H6A···O1iv0.962.563.453 (4)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O5—H1W⋯O2i 0.78 (12)2.46 (14)3.086 (4)139 (14)
C3—H3A⋯O2ii 0.932.583.389 (3)146
C6—H6A⋯O1iii 0.962.563.453 (4)156

Symmetry codes: (i) ; (ii) ; (iii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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