Literature DB >> 23723757

Dichlorido{2,6-diisopropyl-N-[(S)-pyrrolidin-2-ylmeth-yl]aniline-κ(2) N,N'}palladium(II).

Saira Nayab1, Hong-In Lee, Jong Hwa Jeong.   

Abstract

In the title compound, [PdCl2(C17H28N2)], the Pd(II) atom displays a square-planar coordination involving two N atoms of a 2,6-diisopropyl-N-[(S)-pyrrolidin-2-ylmeth-yl]aniline ligand and two chloride ligands, with a deviation of 0.090 (1) Å for the Pd(II) atom from the best plane. The absolute configuration of the chiral C atom of the pyrrolidine ring is S, which induces R configurations at the two N atoms of the aniline ligand. Optical isomerism arising from the chelate five-membered ring is configured as δ. The Pd-N bond lengths are 2.040 (3) and 2.072 (2) Å, and the Pd-Cl bond lengths are 2.3055 (8) and 2.3160 (8) Å. In the crystal, pairs of N-H⋯Cl hydrogen bonds link mol-ecules into discrete dimers.

Entities:  

Year:  2013        PMID: 23723757      PMCID: PMC3647791          DOI: 10.1107/S1600536813008271

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the use of palladium complexes bearing enanti­opure ligands in asymmetric synthesis, see: Sodeoka & Hamashima (2006 ▶); Quintard et al. (2008 ▶); Tan et al. (2009 ▶) and as anti­cancer drugs, see: Barnham et al. (1994 ▶). For the synthesis of the 2,6-diisopropyl-N-[(S)-pyrrolidin-2-ylmeth­yl]aniline ligand, see: Shifeng et al. (2010 ▶). For related structures, see: Rafii et al. (2007 ▶). For a description of the Cambridge Structural Database, see: Allen et al. (2002 ▶).

Experimental

Crystal data

[PdCl2(C17H28N2)] M = 437.71 Monoclinic, a = 24.287 (3) Å b = 8.6534 (12) Å c = 18.355 (2) Å β = 94.851 (9)° V = 3843.7 (8) Å3 Z = 8 Mo Kα radiation μ = 1.24 mm−1 T = 293 K 0.45 × 0.40 × 0.40 mm

Data collection

Enraf–Nonius CAD-4 four-circle diffractometer Absorption correction: ψ scan (ABSCALC; McArdle & Daly, 1999 ▶) T min = 0.578, T max = 0.608 3790 measured reflections 3580 independent reflections 3089 reflections with I > 2σ(I) R int = 0.018 3 standard reflections every 60 min intensity decay: 0.2%

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.105 S = 1.08 3580 reflections 199 parameters H-atom parameters constrained Δρmax = 1.33 e Å−3 Δρmin = −1.56 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD (McArdle, 1999 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813008271/fk2069sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813008271/fk2069Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[PdCl2(C17H28N2)]F(000) = 1792
Mr = 437.71Dx = 1.513 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 25 reflections
a = 24.287 (3) Åθ = 9.0–13.0°
b = 8.6534 (12) ŵ = 1.24 mm1
c = 18.355 (2) ÅT = 293 K
β = 94.851 (9)°Brick, orange
V = 3843.7 (8) Å30.45 × 0.40 × 0.40 mm
Z = 8
Enraf–Nonius CAD-4 four-circle diffractometer3089 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.018
Graphite monochromatorθmax = 25.5°, θmin = 1.7°
ω/2θ scansh = 0→29
Absorption correction: ψ scan (ABSCALC; McArdle & Daly, 1999)k = −10→0
Tmin = 0.578, Tmax = 0.608l = −22→22
3790 measured reflections3 standard reflections every 60 min
3580 independent reflections intensity decay: 0.2%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.105H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0819P)2 + 0.2845P] where P = (Fo2 + 2Fc2)/3
3580 reflections(Δ/σ)max = 0.004
199 parametersΔρmax = 1.33 e Å3
0 restraintsΔρmin = −1.56 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Pd0.792743 (8)0.79819 (2)0.934349 (11)0.02593 (12)
Cl10.71265 (3)0.92407 (9)0.89218 (4)0.0389 (2)
Cl20.83021 (3)1.01710 (9)0.99173 (5)0.0391 (2)
N10.76098 (10)0.5922 (3)0.89652 (14)0.0320 (5)
H10.73080.57860.91690.038*
N20.86249 (10)0.6681 (3)0.96516 (14)0.0296 (5)
H20.85970.64561.01030.035*
C10.74724 (15)0.5713 (4)0.81664 (19)0.0448 (8)
H1A0.77700.60750.78890.054*
H1B0.71350.62530.80010.054*
C20.74001 (19)0.3971 (4)0.8098 (2)0.0560 (10)
H2A0.70430.36500.82450.067*
H2B0.74360.36290.76010.067*
C30.78631 (16)0.3348 (4)0.8613 (2)0.0518 (10)
H3A0.81890.31560.83560.062*
H3B0.77540.23880.88330.062*
C40.79815 (12)0.4599 (4)0.92021 (18)0.0352 (7)
H40.78880.42110.96780.042*
C50.85712 (12)0.5168 (3)0.92571 (19)0.0362 (7)
H5A0.88080.44090.95150.043*
H5B0.86920.52870.87700.043*
C60.91821 (11)0.7313 (3)0.96309 (17)0.0291 (6)
C70.95576 (13)0.7160 (3)1.02479 (18)0.0327 (7)
C80.93964 (13)0.6498 (4)1.09665 (17)0.0372 (7)
H80.90950.57621.08520.045*
C90.9180 (2)0.7757 (5)1.1435 (3)0.0637 (12)
H9A0.94690.84911.15620.096*
H9B0.90580.73111.18730.096*
H9C0.88760.82701.11690.096*
C100.98669 (18)0.5623 (6)1.1401 (2)0.0643 (11)
H10A1.01620.63291.15440.096*
H10B1.00020.48221.11010.096*
H10C0.97320.51731.18290.096*
C111.00930 (14)0.7704 (4)1.0203 (2)0.0406 (8)
H111.03470.76291.06100.049*
C121.02549 (14)0.8350 (5)0.9571 (2)0.0463 (8)
H121.06160.86910.95480.056*
C130.98797 (13)0.8487 (4)0.8975 (2)0.0410 (7)
H130.99930.89270.85500.049*
C140.93362 (13)0.7992 (3)0.89800 (18)0.0319 (7)
C150.89514 (13)0.8238 (4)0.82901 (18)0.0383 (7)
H150.85820.78910.83930.046*
C160.89141 (18)0.9966 (5)0.8104 (3)0.0623 (11)
H16A0.92741.03480.80200.093*
H16B0.87761.05200.85040.093*
H16C0.86681.01130.76720.093*
C170.91266 (18)0.7291 (6)0.7649 (2)0.0580 (11)
H17A0.94960.75720.75520.087*
H17B0.88790.74920.72240.087*
H17C0.91160.62110.77680.087*
U11U22U33U12U13U23
Pd0.02146 (17)0.02124 (17)0.03568 (17)0.00033 (7)0.00598 (10)−0.00046 (8)
Cl10.0303 (4)0.0360 (4)0.0503 (5)0.0077 (3)0.0037 (3)0.0045 (3)
Cl20.0330 (4)0.0265 (4)0.0583 (5)−0.0053 (3)0.0064 (3)−0.0055 (3)
N10.0259 (12)0.0289 (13)0.0417 (14)−0.0020 (10)0.0056 (10)−0.0027 (11)
N20.0253 (12)0.0252 (11)0.0385 (14)0.0003 (10)0.0048 (10)0.0039 (11)
C10.054 (2)0.0314 (17)0.0469 (19)0.0011 (14)−0.0072 (15)−0.0049 (14)
C20.077 (3)0.0322 (18)0.057 (2)−0.0009 (18)−0.0068 (19)−0.0135 (17)
C30.053 (2)0.0223 (15)0.079 (3)−0.0006 (15)−0.0031 (19)−0.0053 (17)
C40.0348 (15)0.0246 (15)0.0461 (17)−0.0013 (12)0.0030 (13)0.0054 (13)
C50.0317 (15)0.0245 (15)0.0526 (19)0.0015 (12)0.0054 (13)−0.0026 (13)
C60.0207 (13)0.0271 (14)0.0399 (16)0.0026 (11)0.0048 (11)−0.0020 (12)
C70.0309 (15)0.0262 (15)0.0409 (17)0.0031 (11)0.0027 (13)−0.0018 (12)
C80.0385 (17)0.0371 (17)0.0354 (16)−0.0002 (14)−0.0005 (13)0.0023 (14)
C90.075 (3)0.057 (3)0.063 (3)0.006 (2)0.029 (2)−0.005 (2)
C100.063 (3)0.065 (3)0.064 (3)0.013 (2)−0.003 (2)0.016 (2)
C110.0279 (15)0.0421 (19)0.050 (2)−0.0007 (13)−0.0054 (14)−0.0020 (16)
C120.0281 (16)0.0480 (19)0.064 (2)−0.0051 (15)0.0089 (15)0.0036 (18)
C130.0302 (15)0.0403 (18)0.054 (2)−0.0019 (14)0.0116 (14)0.0073 (15)
C140.0289 (15)0.0274 (16)0.0404 (17)0.0013 (10)0.0079 (13)−0.0007 (12)
C150.0319 (16)0.0445 (19)0.0402 (18)0.0028 (13)0.0133 (14)0.0112 (15)
C160.056 (2)0.059 (3)0.071 (3)0.0042 (19)0.003 (2)0.028 (2)
C170.048 (2)0.083 (3)0.043 (2)0.006 (2)0.0075 (17)−0.004 (2)
Pd—N12.040 (3)C7—C81.519 (5)
Pd—N22.072 (2)C8—C91.510 (5)
Pd—Cl12.3055 (8)C8—C101.536 (5)
Pd—Cl22.3160 (8)C8—H80.9800
N1—C11.487 (4)C9—H9A0.9600
N1—C41.500 (4)C9—H9B0.9600
N1—H10.8600C9—H9C0.9600
N2—C61.463 (4)C10—H10A0.9600
N2—C51.497 (4)C10—H10B0.9600
N2—H20.8600C10—H10C0.9600
C1—C21.521 (5)C11—C121.375 (5)
C1—H1A0.9700C11—H110.9300
C1—H1B0.9700C12—C131.369 (5)
C2—C31.507 (5)C12—H120.9300
C2—H2A0.9700C13—C141.388 (4)
C2—H2B0.9700C13—H130.9300
C3—C41.539 (5)C14—C151.524 (5)
C3—H3A0.9700C15—C171.524 (5)
C3—H3B0.9700C15—C161.535 (5)
C4—C51.510 (4)C15—H150.9800
C4—H40.9800C16—H16A0.9600
C5—H5A0.9700C16—H16B0.9600
C5—H5B0.9700C16—H16C0.9600
C6—C71.399 (4)C17—H17A0.9600
C6—C141.410 (4)C17—H17B0.9600
C7—C111.392 (5)C17—H17C0.9600
N1—Pd—N283.98 (10)C11—C7—C6117.9 (3)
N1—Pd—Cl190.83 (7)C11—C7—C8119.3 (3)
N2—Pd—Cl1174.45 (7)C6—C7—C8122.7 (3)
N1—Pd—Cl2172.72 (7)C9—C8—C7110.5 (3)
N2—Pd—Cl292.27 (8)C9—C8—C10109.8 (3)
Cl1—Pd—Cl293.10 (3)C7—C8—C10113.6 (3)
C1—N1—C4105.8 (2)C9—C8—H8107.5
C1—N1—Pd119.3 (2)C7—C8—H8107.5
C4—N1—Pd111.56 (18)C10—C8—H8107.5
C1—N1—H1106.5C8—C9—H9A109.5
C4—N1—H1106.5C8—C9—H9B109.5
Pd—N1—H1106.5H9A—C9—H9B109.5
C6—N2—C5111.0 (2)C8—C9—H9C109.5
C6—N2—Pd121.74 (19)H9A—C9—H9C109.5
C5—N2—Pd107.90 (18)H9B—C9—H9C109.5
C6—N2—H2104.9C8—C10—H10A109.5
C5—N2—H2104.9C8—C10—H10B109.5
Pd—N2—H2104.9H10A—C10—H10B109.5
N1—C1—C2102.5 (3)C8—C10—H10C109.5
N1—C1—H1A111.3H10A—C10—H10C109.5
C2—C1—H1A111.3H10B—C10—H10C109.5
N1—C1—H1B111.3C12—C11—C7121.5 (3)
C2—C1—H1B111.3C12—C11—H11119.3
H1A—C1—H1B109.2C7—C11—H11119.3
C3—C2—C1103.2 (3)C13—C12—C11119.4 (3)
C3—C2—H2A111.1C13—C12—H12120.3
C1—C2—H2A111.1C11—C12—H12120.3
C3—C2—H2B111.1C12—C13—C14122.5 (3)
C1—C2—H2B111.1C12—C13—H13118.8
H2A—C2—H2B109.1C14—C13—H13118.8
C2—C3—C4105.9 (3)C13—C14—C6117.1 (3)
C2—C3—H3A110.6C13—C14—C15117.9 (3)
C4—C3—H3A110.6C6—C14—C15125.0 (3)
C2—C3—H3B110.6C17—C15—C14112.0 (3)
C4—C3—H3B110.6C17—C15—C16111.6 (3)
H3A—C3—H3B108.7C14—C15—C16110.0 (3)
N1—C4—C5108.3 (2)C17—C15—H15107.7
N1—C4—C3105.2 (3)C14—C15—H15107.7
C5—C4—C3113.3 (3)C16—C15—H15107.7
N1—C4—H4110.0C15—C16—H16A109.5
C5—C4—H4110.0C15—C16—H16B109.5
C3—C4—H4110.0H16A—C16—H16B109.5
N2—C5—C4111.2 (2)C15—C16—H16C109.5
N2—C5—H5A109.4H16A—C16—H16C109.5
C4—C5—H5A109.4H16B—C16—H16C109.5
N2—C5—H5B109.4C15—C17—H17A109.5
C4—C5—H5B109.4C15—C17—H17B109.5
H5A—C5—H5B108.0H17A—C17—H17B109.5
C7—C6—C14121.6 (3)C15—C17—H17C109.5
C7—C6—N2119.0 (3)H17A—C17—H17C109.5
C14—C6—N2119.4 (3)H17B—C17—H17C109.5
D—H···AD—HH···AD···AD—H···A
N1—H1···Cl2i0.862.473.283 (3)158
N2—H2···Cl1i0.862.683.410 (3)144
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯Cl2i 0.862.473.283 (3)158
N2—H2⋯Cl1i 0.862.683.410 (3)144

Symmetry code: (i) .

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