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Literature DB >> 23722203

Endrov: an integrated platform for image analysis.

Johan Henriksson, Jürgen Hench, Yong Guang Tong, Arvid Johansson, David Johansson, Thomas R Bürglin.

Abstract

Mesh：

Year: 2013 PMID： 23722203 DOI： 10.1038/nmeth.2478

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

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9 in total

1. BioImageXD: an open, general-purpose and high-throughput image-processing platform.

Authors: Pasi Kankaanpää; Lassi Paavolainen; Silja Tiitta; Mikko Karjalainen; Joacim Päivärinne; Jonna Nieminen; Varpu Marjomäki; Jyrki Heino; Daniel J White
Journal: Nat Methods Date: 2012-06-28 Impact factor: 28.547

2. The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program.

Authors: Olivier Tassy; Delphine Dauga; Fabrice Daian; Daniel Sobral; François Robin; Pierre Khoueiry; David Salgado; Vanessa Fox; Danièle Caillol; Renaud Schiappa; Baptiste Laporte; Anne Rios; Guillaume Luxardi; Takehiro Kusakabe; Jean-Stéphane Joly; Sébastien Darras; Lionel Christiaen; Magali Contensin; Hélène Auger; Clément Lamy; Clare Hudson; Ute Rothbächer; Michael J Gilchrist; Kazuhiro W Makabe; Kohji Hotta; Shigeki Fujiwara; Nori Satoh; Yutaka Satou; Patrick Lemaire
Journal: Genome Res Date: 2010-07-20 Impact factor: 9.043

3. Icy: an open bioimage informatics platform for extended reproducible research.

Authors: Fabrice de Chaumont; Stéphane Dallongeville; Nicolas Chenouard; Nicolas Hervé; Sorin Pop; Thomas Provoost; Vannary Meas-Yedid; Praveen Pankajakshan; Timothée Lecomte; Yoann Le Montagner; Thibault Lagache; Alexandre Dufour; Jean-Christophe Olivo-Marin
Journal: Nat Methods Date: 2012-06-28 Impact factor: 28.547

4. Fiji: an open-source platform for biological-image analysis.

Authors: Johannes Schindelin; Ignacio Arganda-Carreras; Erwin Frise; Verena Kaynig; Mark Longair; Tobias Pietzsch; Stephan Preibisch; Curtis Rueden; Stephan Saalfeld; Benjamin Schmid; Jean-Yves Tinevez; Daniel James White; Volker Hartenstein; Kevin Eliceiri; Pavel Tomancak; Albert Cardona
Journal: Nat Methods Date: 2012-06-28 Impact factor: 28.547

5. Metadata matters: access to image data in the real world.

Authors: Melissa Linkert; Curtis T Rueden; Chris Allan; Jean-Marie Burel; Will Moore; Andrew Patterson; Brian Loranger; Josh Moore; Carlos Neves; Donald Macdonald; Aleksandra Tarkowska; Caitlin Sticco; Emma Hill; Mike Rossner; Kevin W Eliceiri; Jason R Swedlow
Journal: J Cell Biol Date: 2010-05-31 Impact factor: 10.539

6. Computer control of microscopes using µManager.

Authors: Arthur Edelstein; Nenad Amodaj; Karl Hoover; Ron Vale; Nico Stuurman
Journal: Curr Protoc Mol Biol Date: 2010-10

7. OMERO: flexible, model-driven data management for experimental biology.

Authors: Chris Allan; Jean-Marie Burel; Josh Moore; Colin Blackburn; Melissa Linkert; Scott Loynton; Donald Macdonald; William J Moore; Carlos Neves; Andrew Patterson; Michael Porter; Aleksandra Tarkowska; Brian Loranger; Jerome Avondo; Ingvar Lagerstedt; Luca Lianas; Simone Leo; Katherine Hands; Ron T Hay; Ardan Patwardhan; Christoph Best; Gerard J Kleywegt; Gianluigi Zanetti; Jason R Swedlow
Journal: Nat Methods Date: 2012-02-28 Impact factor: 28.547

8. Comprehensive maps of Drosophila higher olfactory centers: spatially segregated fruit and pheromone representation.

Authors: Gregory S X E Jefferis; Christopher J Potter; Alexander M Chan; Elizabeth C Marin; Torsten Rohlfing; Calvin R Maurer; Liqun Luo
Journal: Cell Date: 2007-03-23 Impact factor: 41.582

9. ImgLib2--generic image processing in Java.

Authors: Tobias Pietzsch; Stephan Preibisch; Pavel Tomancák; Stephan Saalfeld
Journal: Bioinformatics Date: 2012-09-08 Impact factor: 6.937

9 in total

11 in total

1. Tracking and Quantifying Developmental Processes in C. elegans Using Open-source Tools.

Authors: Priyanka Dutta; Christina Lehmann; Devang Odedra; Deepika Singh; Christian Pohl
Journal: J Vis Exp Date: 2015-12-16 Impact factor: 1.355

Review 2. The ImageJ ecosystem: An open platform for biomedical image analysis.

Authors: Johannes Schindelin; Curtis T Rueden; Mark C Hiner; Kevin W Eliceiri
Journal: Mol Reprod Dev Date: 2015-07-07 Impact factor: 2.609

Review 3. Imaging of anticancer drug action in single cells.

Authors: Miles A Miller; Ralph Weissleder
Journal: Nat Rev Cancer Date: 2017-06-23 Impact factor: 60.716

4. WormGUIDES: an interactive single cell developmental atlas and tool for collaborative multidimensional data exploration.

Authors: Anthony Santella; Raúl Catena; Ismar Kovacevic; Pavak Shah; Zidong Yu; Javier Marquina-Solis; Abhishek Kumar; Yicong Wu; James Schaff; Daniel Colón-Ramos; Hari Shroff; William A Mohler; Zhirong Bao
Journal: BMC Bioinformatics Date: 2015-06-09 Impact factor: 3.169

5. The Homeobox Genes of Caenorhabditis elegans and Insights into Their Spatio-Temporal Expression Dynamics during Embryogenesis.

Authors: Jürgen Hench; Johan Henriksson; Akram M Abou-Zied; Martin Lüppert; Johan Dethlefsen; Krishanu Mukherjee; Yong Guang Tong; Lois Tang; Umesh Gangishetti; David L Baillie; Thomas R Bürglin
Journal: PLoS One Date: 2015-05-29 Impact factor: 3.240

10. par-1, atypical pkc, and PP2A/B55 sur-6 are implicated in the regulation of exocyst-mediated membrane trafficking in Caenorhabditis elegans.

Authors: Yaming Jiu; Kiran Hasygar; Lois Tang; Yanbo Liu; Carina I Holmberg; Thomas R Bürglin; Ville Hietakangas; Jussi Jäntti
Journal: G3 (Bethesda) Date: 2014-01-10 Impact factor: 3.154