Literature DB >> 23713778

Weakly stable regions and protein-protein interactions in beta-barrel membrane proteins.

Hammad Naveed, Jie Liang1.   

Abstract

We briefly discuss recent progress in computational characterization of the sequence and structural properties of β-barrel membrane properties. We discuss the emerging concept of weakly stable regions in β-barrel membrane proteins, computational methods to identify these regions and mechanisms adopted by β-barrel membrane proteins in nature to stabilize them. We further discuss computational methods to identify protein-protein interactions in β-barrel membrane proteins and recent experimental studies that aim at altering the biophysical properties including oligomerization state and stability of β-barrel membrane proteins based on the emerging organization principles of these proteins from recent computational studies.

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Year:  2014        PMID: 23713778      PMCID: PMC4127314          DOI: 10.2174/13816128113199990071

Source DB:  PubMed          Journal:  Curr Pharm Des        ISSN: 1381-6128            Impact factor:   3.116


  71 in total

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5.  The preprotein translocation channel of the outer membrane of mitochondria.

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Journal:  Cell       Date:  1998-06-12       Impact factor: 41.582

6.  Statistical analysis of predicted transmembrane alpha-helices.

Authors:  I T Arkin; A T Brunger
Journal:  Biochim Biophys Acta       Date:  1998-12-08

7.  Siderophore-mediated iron transport: crystal structure of FhuA with bound lipopolysaccharide.

Authors:  A D Ferguson; E Hofmann; J W Coulton; K Diederichs; W Welte
Journal:  Science       Date:  1998-12-18       Impact factor: 47.728

8.  Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms.

Authors:  E Wallin; G von Heijne
Journal:  Protein Sci       Date:  1998-04       Impact factor: 6.725

9.  Voltage sensing in the PhoE and OmpF outer membrane porins of Escherichia coli: role of charged residues.

Authors:  P Van Gelder; N Saint; P Phale; E F Eppens; A Prilipov; R van Boxtel; J P Rosenbusch; J Tommassen
Journal:  J Mol Biol       Date:  1997-06-20       Impact factor: 5.469

10.  Tom40 forms the hydrophilic channel of the mitochondrial import pore for preproteins [see comment].

Authors:  K Hill; K Model; M T Ryan; K Dietmeier; F Martin; R Wagner; N Pfanner
Journal:  Nature       Date:  1998-10-01       Impact factor: 49.962

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  4 in total

1.  Quaternary structure of the small amino acid transporter OprG from Pseudomonas aeruginosa.

Authors:  Raghavendar Reddy Sanganna Gari; Patrick Seelheim; Brendan Marsh; Volker Kiessling; Carl E Creutz; Lukas K Tamm
Journal:  J Biol Chem       Date:  2018-09-20       Impact factor: 5.157

2.  High-resolution structure prediction of β-barrel membrane proteins.

Authors:  Wei Tian; Meishan Lin; Ke Tang; Jie Liang; Hammad Naveed
Journal:  Proc Natl Acad Sci U S A       Date:  2018-01-29       Impact factor: 11.205

3.  Structure and Function of Redox-Sensitive Superfolder Green Fluorescent Protein Variant.

Authors:  Kim C Heimsch; Christoph G W Gertzen; Anna Katharina Schuh; Thomas Nietzel; Stefan Rahlfs; Jude M Przyborski; Holger Gohlke; Markus Schwarzländer; Katja Becker; Karin Fritz-Wolf
Journal:  Antioxid Redox Signal       Date:  2022-06-22       Impact factor: 7.468

4.  Porin from Marine Bacterium Marinomonas primoryensis KMM 3633T: Isolation, Physico-Chemical Properties, and Functional Activity.

Authors:  Olga D Novikova; Valentina A Khomenko; Natalia Yu Kim; Galina N Likhatskaya; Lyudmila A Romanenko; Ekaterina I Aksenova; Marina S Kunda; Natalia N Ryzhova; Olga Yu Portnyagina; Tamara F Solov'eva; Olga L Voronina
Journal:  Molecules       Date:  2020-07-08       Impact factor: 4.411

  4 in total

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