Literature DB >> 23712255

Identification of two additional members of the tRNA isopentenyltransferase family in Physcomitrella patens.

Gunvant Patil1, Bjorn Nicander.   

Abstract

The Physcomitrella patens genome has seven genes apparently coding for the isopentenyltransferase type of tRNA-modifying enzyme, while other organisms have one or two. The predicted sequences have parts that differ significantly from other isopentenyltransferases. Only one of the seven (PpIPT1) has earlier been shown to be expressed. We now report expression of two more, PpIPT4 and PpIPT5. The cloned genes were able to functionally complement a yeast mutant lacking tRNA isopentenyltransferase. Sequencing showed they are related to the earlier studied PpIPT1. The sequences of the three differ mainly from each other in a tRNA-binding area and the 5'-end subcellular targeting motif area. This indicates that, after arising through gene duplication, they have evolved to enable partly different functions.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23712255     DOI: 10.1007/s11103-013-0072-x

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  37 in total

1.  Detection and evaluation of intron retention events in the human transcriptome.

Authors:  Pedro Alexandre Favoretto Galante; Noboru Jo Sakabe; Natanja Kirschbaum-Slager; Sandro José de Souza
Journal:  RNA       Date:  2004-05       Impact factor: 4.942

2.  MOD5 translation initiation sites determine N6-isopentenyladenosine modification of mitochondrial and cytoplasmic tRNA.

Authors:  E C Gillman; L B Slusher; N C Martin; A K Hopper
Journal:  Mol Cell Biol       Date:  1991-05       Impact factor: 4.272

3.  Cloning of a human tRNA isopentenyl transferase.

Authors:  A Golovko; G Hjälm; F Sitbon; B Nicander
Journal:  Gene       Date:  2000-11-27       Impact factor: 3.688

4.  Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: insight into tRNA recognition and reaction mechanism.

Authors:  Chun Zhou; Raven H Huang
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-13       Impact factor: 11.205

5.  Jalview Version 2--a multiple sequence alignment editor and analysis workbench.

Authors:  Andrew M Waterhouse; James B Procter; David M A Martin; Michèle Clamp; Geoffrey J Barton
Journal:  Bioinformatics       Date:  2009-01-16       Impact factor: 6.937

6.  Snf1-related protein kinase 1 is needed for growth in a normal day-night light cycle.

Authors:  Mattias Thelander; Tina Olsson; Hans Ronne
Journal:  EMBO J       Date:  2004-04-01       Impact factor: 11.598

7.  Genome-wide mapping of alternative splicing in Arabidopsis thaliana.

Authors:  Sergei A Filichkin; Henry D Priest; Scott A Givan; Rongkun Shen; Douglas W Bryant; Samuel E Fox; Weng-Keen Wong; Todd C Mockler
Journal:  Genome Res       Date:  2009-10-26       Impact factor: 9.043

8.  Unraveling the evolution of cytokinin signaling.

Authors:  Birgit Pils; Alexander Heyl
Journal:  Plant Physiol       Date:  2009-08-12       Impact factor: 8.340

9.  Targeted gene knockouts reveal overlapping functions of the five Physcomitrella patens FtsZ isoforms in chloroplast division, chloroplast shaping, cell patterning, plant development, and gravity sensing.

Authors:  Anja Martin; Daniel Lang; Sebastian T Hanke; Stefanie J X Mueller; Eric Sarnighausen; Marco Vervliet-Scheebaum; Ralf Reski
Journal:  Mol Plant       Date:  2009-09-10       Impact factor: 13.164

10.  Characterisation of a prokaryote-type tRNA-isopentenyltransferase gene from the moss Physcomitrella patens.

Authors:  Natalya A Yevdakova; Klaus von Schwartzenberg
Journal:  Planta       Date:  2007-04-21       Impact factor: 4.540

View more
  7 in total

1.  Soybean (Glycine max) SWEET gene family: insights through comparative genomics, transcriptome profiling and whole genome re-sequence analysis.

Authors:  Gunvant Patil; Babu Valliyodan; Rupesh Deshmukh; Silvas Prince; Bjorn Nicander; Mingzhe Zhao; Humira Sonah; Li Song; Li Lin; Juhi Chaudhary; Yang Liu; Trupti Joshi; Dong Xu; Henry T Nguyen
Journal:  BMC Genomics       Date:  2015-07-11       Impact factor: 3.969

2.  Identification and Comparative Analysis of Differential Gene Expression in Soybean Leaf Tissue under Drought and Flooding Stress Revealed by RNA-Seq.

Authors:  Wei Chen; Qiuming Yao; Gunvant B Patil; Gaurav Agarwal; Rupesh K Deshmukh; Li Lin; Biao Wang; Yongqin Wang; Silvas J Prince; Li Song; Dong Xu; Yongqiang C An; Babu Valliyodan; Rajeev K Varshney; Henry T Nguyen
Journal:  Front Plant Sci       Date:  2016-07-19       Impact factor: 5.753

3.  Targeting mitochondrial and cytosolic substrates of TRIT1 isopentenyltransferase: Specificity determinants and tRNA-i6A37 profiles.

Authors:  Abdul Khalique; Sandy Mattijssen; Alexander F Haddad; Shereen Chaudhry; Richard J Maraia
Journal:  PLoS Genet       Date:  2020-04-23       Impact factor: 5.917

4.  Genome reorganization of the GmSHMT gene family in soybean showed a lack of functional redundancy in resistance to soybean cyst nematode.

Authors:  Naoufal Lakhssassi; Gunvant Patil; Sarbottam Piya; Zhou Zhou; Azam Baharlouei; My Abdelmajid Kassem; David A Lightfoot; Tarek Hewezi; Abdelali Barakat; Henry T Nguyen; Khalid Meksem
Journal:  Sci Rep       Date:  2019-02-06       Impact factor: 4.379

5.  Isopentenyltransferase-1 (IPT1) knockout in Physcomitrella together with phylogenetic analyses of IPTs provide insights into evolution of plant cytokinin biosynthesis.

Authors:  Ann-Cathrin Lindner; Daniel Lang; Maike Seifert; Kateřina Podlešáková; Ondřej Novák; Miroslav Strnad; Ralf Reski; Klaus von Schwartzenberg
Journal:  J Exp Bot       Date:  2014-04-01       Impact factor: 6.992

6.  CHASE domain-containing receptors play an essential role in the cytokinin response of the moss Physcomitrella patens.

Authors:  Klaus von Schwartzenberg; Ann-Cathrin Lindner; Njuscha Gruhn; Jan Šimura; Ondřej Novák; Miroslav Strnad; Martine Gonneau; Fabien Nogué; Alexander Heyl
Journal:  J Exp Bot       Date:  2015-11-23       Impact factor: 6.992

7.  Tangled history of a multigene family: The evolution of ISOPENTENYLTRANSFERASE genes.

Authors:  Kanae Nishii; Frank Wright; Yun-Yu Chen; Michael Möller
Journal:  PLoS One       Date:  2018-08-02       Impact factor: 3.240

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.