Literature DB >> 23710056

Gracilimonas rosea sp. nov., isolated from tropical seawater, and emended description of the genus Gracilimonas.

Yirang Cho1, Hyunwoo Chung1, Gwang Il Jang1, Dong Han Choi2, Jae Hoon Noh3, Byung Cheol Cho1.   

Abstract

A Gram-staining-negative, non-motile, spore-forming, rod-shaped, marine bacterial strain, CL-KR2(T), was isolated from tropical seawater near Kosrae, an island in the Federated States of Micronesia. Analysis of the 16S rRNA gene sequence of strain CL-KR2(T) revealed a clear affiliation with the genus Gracilimonas. Based on phylogenetic analysis, strain CL-KR2(T) showed the closest phylogenetic relationship to Gracilimonas tropica CL-CB462(T), with 16S rRNA gene sequence similarity of 96.6 %. DNA-DNA relatedness between strain CL-KR2(T) and G. tropica CL-CB462(T) was 6.7 % (reciprocal 9.5 %). Strain CL-KR2(T) grew in the presence of 1-20 % sea salts and the optimal salt concentration was 3.5-5 %. The temperature and pH optima for growth were 35 °C and pH 7.5. The major cellular fatty acids (≥10.0 %) of strain CL-KR2(T) were iso-C15 : 0, summed feature 3 (iso-C15 : 0 2-OH and/or C16 : 1ω7c) and iso-C17 : 1ω9c and the only isoprenoid quinone was MK-7. The polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, an unidentified phospholipid, two unidentified glycolipids and two unidentified lipids. The genomic DNA G+C content of strain CL-KR2(T) was 43.2 mol%. The combined phenotypic, chemotaxonomic and phylogenetic data showed that strain CL-KR2(T) could be distinguished from the only member of the genus Gracilimonas with a validly published name. Thus, strain CL-KR2(T) should be assigned to a novel species in the genus Gracilimonas, for which the name Gracilimonas rosea sp. nov. is proposed. The type strain is CL-KR2(T) ( = KCCM 90206(T) = JCM 18898(T)).

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Year:  2013        PMID: 23710056     DOI: 10.1099/ijs.0.052340-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  4 in total

1.  Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines.

Authors:  Charlotte D Vavourakis; Rohit Ghai; Francisco Rodriguez-Valera; Dimitry Y Sorokin; Susannah G Tringe; Philip Hugenholtz; Gerard Muyzer
Journal:  Front Microbiol       Date:  2016-02-25       Impact factor: 5.640

2.  Genome-Based Taxonomic Classification of Bacteroidetes.

Authors:  Richard L Hahnke; Jan P Meier-Kolthoff; Marina García-López; Supratim Mukherjee; Marcel Huntemann; Natalia N Ivanova; Tanja Woyke; Nikos C Kyrpides; Hans-Peter Klenk; Markus Göker
Journal:  Front Microbiol       Date:  2016-12-20       Impact factor: 5.640

3.  In Situ Growth of Halophilic Bacteria in Saline Fracture Fluids from 2.4 km below Surface in the Deep Canadian Shield.

Authors:  Regina L Wilpiszeski; Barbara Sherwood Lollar; Oliver Warr; Christopher H House
Journal:  Life (Basel)       Date:  2020-11-24

4.  High-quality draft genome sequence of Gracilimonas tropica CL-CB462(T) (DSM 19535(T)), isolated from a Synechococcus culture.

Authors:  Dong Han Choi; Chisang Ahn; Gwang Il Jang; Alla Lapidus; James Han; T B K Reddy; Marcel Huntemann; Amrita Pati; Natalia Ivanova; Victor Markowitz; Manfred Rohde; Brian Tindall; Markus Göker; Tanja Woyke; Hans-Peter Klenk; Nikos C Kyrpides; Byung Cheol Cho
Journal:  Stand Genomic Sci       Date:  2015-11-11
  4 in total

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