Literature DB >> 23703686

VOXEL-WISE GROUP ANALYSIS OF DTI.

Zhexing Liu1, Hongtu Zhu, Bonita L Marks, Laurence M Katz, Casey B Goodlett, Guido Gerig, Martin Styner.   

Abstract

Diffusion tensor MRI (DTI) is now a widely used modality to investigate the fiber tissues in vivo, especially the white matter in brain. An automatic pipeline is described in this paper to conduct a localized voxel-wise multiple-subject group comparison study of DTI. The pipeline consists of 3 steps: 1) Preprocessing, including image format converting, image quality check, eddy-current and motion artifact correction, skull stripping and tensor image estimation, 2) study-specific unbiased DTI atlas computation via affine followed by fluid nonlinear registration and warping of all individual DTI images into the common atlas space to achieve voxel-wise correspondence, 3) voxelwise statistical analysis via heterogeneous linear regression and wild bootstrap technique for correcting for multiple comparisons. This pipeline was applied to process data from a fitness and aging study and preliminary results are presented. The results show that this fully automatic pipeline is suitable for voxel-wise group DTI analysis.

Entities:  

Keywords:  Diffusion tensor; Group comparison; MRI; Voxel-wise analysis

Year:  2009        PMID: 23703686      PMCID: PMC3660096          DOI: 10.1109/isbi.2009.5193172

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  9 in total

1.  Voxel based versus region of interest analysis in diffusion tensor imaging of neurodevelopment.

Authors:  Lindsay Snook; Chris Plewes; Christian Beaulieu
Journal:  Neuroimage       Date:  2006-10-27       Impact factor: 6.556

2.  Improved correspondence for DTI population studies via unbiased atlas building.

Authors:  Casey Goodlett; Brad Davis; Remi Jean; John Gilmore; Guido Gerig
Journal:  Med Image Comput Comput Assist Interv       Date:  2006

3.  Whole brain voxel-wise analysis of single-subject serial DTI by permutation testing.

Authors:  Sungwon Chung; Daniel Pelletier; Michael Sdika; Ying Lu; Jeffrey I Berman; Roland G Henry
Journal:  Neuroimage       Date:  2007-11-07       Impact factor: 6.556

4.  A statistical analysis of brain morphology using wild bootstrapping.

Authors:  Hongtu Zhu; Joseph G Ibrahim; Niansheng Tang; Daniel B Rowe; Xuejun Hao; Ravi Bansal; Bradley S Peterson
Journal:  IEEE Trans Med Imaging       Date:  2007-07       Impact factor: 10.048

5.  Delineating white matter structure in diffusion tensor MRI with anisotropy creases.

Authors:  Gordon Kindlmann; Xavier Tricoche; Carl-Fredrik Westin
Journal:  Med Image Anal       Date:  2007-08-03       Impact factor: 8.545

6.  Microstructural and physiological features of tissues elucidated by quantitative-diffusion-tensor MRI.

Authors:  P J Basser; C Pierpaoli
Journal:  J Magn Reson B       Date:  1996-06

7.  Unbiased diffeomorphic atlas construction for computational anatomy.

Authors:  S Joshi; Brad Davis; Matthieu Jomier; Guido Gerig
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

8.  Group analysis of DTI fiber tract statistics with application to neurodevelopment.

Authors:  Casey B Goodlett; P Thomas Fletcher; John H Gilmore; Guido Gerig
Journal:  Neuroimage       Date:  2008-11-14       Impact factor: 6.556

9.  Tract-based spatial statistics: voxelwise analysis of multi-subject diffusion data.

Authors:  Stephen M Smith; Mark Jenkinson; Heidi Johansen-Berg; Daniel Rueckert; Thomas E Nichols; Clare E Mackay; Kate E Watkins; Olga Ciccarelli; M Zaheer Cader; Paul M Matthews; Timothy E J Behrens
Journal:  Neuroimage       Date:  2006-04-19       Impact factor: 6.556

  9 in total
  11 in total

1.  Genetic influences on brain asymmetry: a DTI study of 374 twins and siblings.

Authors:  Neda Jahanshad; Agatha D Lee; Marina Barysheva; Katie L McMahon; Greig I de Zubicaray; Nicholas G Martin; Margaret J Wright; Arthur W Toga; Paul M Thompson
Journal:  Neuroimage       Date:  2010-04-27       Impact factor: 6.556

2.  Diffusion tensor imaging-based characterization of brain neurodevelopment in primates.

Authors:  Yundi Shi; Sarah J Short; Rebecca C Knickmeyer; Jiaping Wang; Christopher L Coe; Marc Niethammer; John H Gilmore; Hongtu Zhu; Martin A Styner
Journal:  Cereb Cortex       Date:  2012-01-23       Impact factor: 5.357

3.  Quality Control of Diffusion Weighted Images.

Authors:  Zhexing Liu; Yi Wang; Guido Gerig; Sylvain Gouttard; Ran Tao; Thomas Fletcher; Martin Styner
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2010-03-11

4.  Evaluation of DTI Property Maps as Basis of DTI Atlas Building.

Authors:  Zhexing Liu; Casey Goodlett; Guido Gerig; Martin Styner
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2010-03-12

5.  ATLAS CONSTRUCTION FROM HIGH ANGULAR RESOLUTION DIFFUSION IMAGING DATA REPRESENTED BY GAUSSIAN MIXTURE FIELDS.

Authors:  Guang Cheng; Baba C Vemuri; Min-Sig Hwang; Dena Howland; John R Forder
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2011-06-09

6.  Neuroimaging, behavioral, and psychological sequelae of repetitive combined blast/impact mild traumatic brain injury in Iraq and Afghanistan war veterans.

Authors:  Eric C Petrie; Donna J Cross; Vasily L Yarnykh; Todd Richards; Nathalie M Martin; Kathleen Pagulayan; David Hoff; Kim Hart; Cynthia Mayer; Matthew Tarabochia; Murray A Raskind; Satoshi Minoshima; Elaine R Peskind
Journal:  J Neurotrauma       Date:  2014-03-01       Impact factor: 5.269

7.  Synergy of image analysis for animal and human neuroimaging supports translational research on drug abuse.

Authors:  Guido Gerig; Ipek Oguz; Sylvain Gouttard; Joohwi Lee; Hongyu An; Weili Lin; Matthew McMurray; Karen Grewen; Josephine Johns; Martin Andreas Styner
Journal:  Front Psychiatry       Date:  2011-10-03       Impact factor: 4.157

8.  UNC-Utah NA-MIC framework for DTI fiber tract analysis.

Authors:  Audrey R Verde; Francois Budin; Jean-Baptiste Berger; Aditya Gupta; Mahshid Farzinfar; Adrien Kaiser; Mihye Ahn; Hans Johnson; Joy Matsui; Heather C Hazlett; Anuja Sharma; Casey Goodlett; Yundi Shi; Sylvain Gouttard; Clement Vachet; Joseph Piven; Hongtu Zhu; Guido Gerig; Martin Styner
Journal:  Front Neuroinform       Date:  2014-01-09       Impact factor: 4.081

9.  The Relationship between Cerebral White Matter Integrity and Cognitive Function in Mild Stroke with Basal Ganglia Region Infarcts.

Authors:  Li-Jun Zuo; Zi-Xiao Li; Rong-Yan Zhu; Yao-Jing Chen; YanHong Dong; Yi-Long Wang; Xing-Quan Zhao; Zhan-Jun Zhang; Perminder Sachdev; Wei Zhang; Yong-Jun Wang
Journal:  Sci Rep       Date:  2018-05-30       Impact factor: 4.379

10.  A Method for Automated Classification of Parkinson's Disease Diagnosis Using an Ensemble Average Propagator Template Brain Map Estimated from Diffusion MRI.

Authors:  Monami Banerjee; Michael S Okun; David E Vaillancourt; Baba C Vemuri
Journal:  PLoS One       Date:  2016-06-09       Impact factor: 3.240

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