Literature DB >> 23701314

Genes and mutations causing retinitis pigmentosa.

S P Daiger1, L S Sullivan, S J Bowne.   

Abstract

Retinitis pigmentosa (RP) is a heterogeneous set of inherited retinopathies with many disease-causing genes, many known mutations, and highly varied clinical consequences. Progress in finding treatments is dependent on determining the genes and mutations causing these diseases, which includes both gene discovery and mutation screening in affected individuals and families. Despite the complexity, substantial progress has been made in finding RP genes and mutations. Depending on the type of RP, and the technology used, it is possible to detect mutations in 30-80% of cases. One of the most powerful approaches to genetic testing is high-throughput 'deep sequencing', that is, next-generation sequencing (NGS). NGS has identified several novel RP genes but a substantial fraction of previously unsolved cases have mutations in genes that are known causes of retinal disease but not necessarily RP. Apparent discrepancy between the molecular defect and clinical findings may warrant reevaluation of patients and families. In this review, we summarize the current approaches to gene discovery and mutation detection for RP, and indicate pitfalls and unsolved problems. Similar considerations apply to other forms of inherited retinal disease.
© 2013 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Entities:  

Keywords:  genetic screening; inherited retinal diseases; next-generation sequencing; phenotype-genotype reconciliation; retinitis pigmentosa; targeted-capture sequencing

Mesh:

Year:  2013        PMID: 23701314      PMCID: PMC3856531          DOI: 10.1111/cge.12203

Source DB:  PubMed          Journal:  Clin Genet        ISSN: 0009-9163            Impact factor:   4.438


  51 in total

1.  Evidence that the penetrance of mutations at the RP11 locus causing dominant retinitis pigmentosa is influenced by a gene linked to the homologous RP11 allele.

Authors:  T L McGee; M Devoto; J Ott; E L Berson; T P Dryja
Journal:  Am J Hum Genet       Date:  1997-11       Impact factor: 11.025

2.  A paradigm shift in the delivery of services for diagnosis of inherited retinal disease.

Authors:  James O'Sullivan; Brendan G Mullaney; Sanjeev S Bhaskar; Jonathan E Dickerson; Georgina Hall; Anna O'Grady; Andrew Webster; Simon C Ramsden; Graeme C Black
Journal:  J Med Genet       Date:  2012-05       Impact factor: 6.318

3.  Mutations in IMPG2, encoding interphotoreceptor matrix proteoglycan 2, cause autosomal-recessive retinitis pigmentosa.

Authors:  Dikla Bandah-Rozenfeld; Rob W J Collin; Eyal Banin; L Ingeborgh van den Born; Karlien L M Coene; Anna M Siemiatkowska; Lina Zelinger; Muhammad I Khan; Dirk J Lefeber; Inbar Erdinest; Francesco Testa; Francesca Simonelli; Krysta Voesenek; Ellen A W Blokland; Tim M Strom; Caroline C W Klaver; Raheel Qamar; Sandro Banfi; Frans P M Cremers; Dror Sharon; Anneke I den Hollander
Journal:  Am J Hum Genet       Date:  2010-07-30       Impact factor: 11.025

4.  Missense mutation in the USH2A gene: association with recessive retinitis pigmentosa without hearing loss.

Authors:  C Rivolta; E A Sweklo; E L Berson; T P Dryja
Journal:  Am J Hum Genet       Date:  2000-04-20       Impact factor: 11.025

5.  A novel locus for autosomal recessive retinitis pigmentosa in a consanguineous Pakistani family maps to chromosome 2p.

Authors:  Shagufta Naz; S Amer Riazuddin; Lin Li; Mariam Shahid; Samra Kousar; Paul A Sieving; J Fielding Hejtmancik; Sheikh Riazuddin
Journal:  Am J Ophthalmol       Date:  2010-03-15       Impact factor: 5.258

6.  Genomic rearrangements of the PRPF31 gene account for 2.5% of autosomal dominant retinitis pigmentosa.

Authors:  Lori S Sullivan; Sara J Bowne; C Robyn Seaman; Susan H Blanton; Richard A Lewis; John R Heckenlively; David G Birch; Dianna Hughbanks-Wheaton; Stephen P Daiger
Journal:  Invest Ophthalmol Vis Sci       Date:  2006-10       Impact factor: 4.799

7.  Panel-based next generation sequencing as a reliable and efficient technique to detect mutations in unselected patients with retinal dystrophies.

Authors:  Nicola Glöckle; Susanne Kohl; Julia Mohr; Tim Scheurenbrand; Andrea Sprecher; Nicole Weisschuh; Antje Bernd; Günther Rudolph; Max Schubach; Charlotte Poloschek; Eberhart Zrenner; Saskia Biskup; Wolfgang Berger; Bernd Wissinger; John Neidhardt
Journal:  Eur J Hum Genet       Date:  2013-04-17       Impact factor: 4.246

8.  A null mutation in the rhodopsin gene causes rod photoreceptor dysfunction and autosomal recessive retinitis pigmentosa.

Authors:  P J Rosenfeld; G S Cowley; T L McGee; M A Sandberg; E L Berson; T P Dryja
Journal:  Nat Genet       Date:  1992-06       Impact factor: 38.330

9.  Next-generation genetic testing for retinitis pigmentosa.

Authors:  Kornelia Neveling; Rob W J Collin; Christian Gilissen; Ramon A C van Huet; Linda Visser; Michael P Kwint; Sabine J Gijsen; Marijke N Zonneveld; Nienke Wieskamp; Joep de Ligt; Anna M Siemiatkowska; Lies H Hoefsloot; Michael F Buckley; Ulrich Kellner; Kari E Branham; Anneke I den Hollander; Alexander Hoischen; Carel Hoyng; B Jeroen Klevering; L Ingeborgh van den Born; Joris A Veltman; Frans P M Cremers; Hans Scheffer
Journal:  Hum Mutat       Date:  2012-03-19       Impact factor: 4.878

10.  Development and application of a next-generation-sequencing (NGS) approach to detect known and novel gene defects underlying retinal diseases.

Authors:  Isabelle Audo; Kinga M Bujakowska; Thierry Léveillard; Saddek Mohand-Saïd; Marie-Elise Lancelot; Aurore Germain; Aline Antonio; Christelle Michiels; Jean-Paul Saraiva; Mélanie Letexier; José-Alain Sahel; Shomi S Bhattacharya; Christina Zeitz
Journal:  Orphanet J Rare Dis       Date:  2012-01-25       Impact factor: 4.123

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  216 in total

1.  Misfolded opsin mutants display elevated β-sheet structure.

Authors:  Lisa M Miller; Megan Gragg; Tae Gyun Kim; Paul S-H Park
Journal:  FEBS Lett       Date:  2015-09-07       Impact factor: 4.124

2.  microRNAs and inherited retinal dystrophies.

Authors:  Shunbin Xu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-09       Impact factor: 11.205

Review 3.  Structural and molecular bases of rod photoreceptor morphogenesis and disease.

Authors:  Theodore G Wensel; Zhixian Zhang; Ivan A Anastassov; Jared C Gilliam; Feng He; Michael F Schmid; Michael A Robichaux
Journal:  Prog Retin Eye Res       Date:  2016-06-22       Impact factor: 21.198

4.  SCAPER-associated nonsyndromic autosomal recessive retinitis pigmentosa.

Authors:  Ruben Jauregui; Amanda L Thomas; Benjamin Liechty; Gabriel Velez; Vinit B Mahajan; Lorraine Clark; Stephen H Tsang
Journal:  Am J Med Genet A       Date:  2018-12-18       Impact factor: 2.802

5.  Proteomic profiling of early degenerative retina of RCS rats.

Authors:  Zhi-Hong Zhu; Yan Fu; Chuan-Huang Weng; Cong-Jian Zhao; Zheng-Qin Yin
Journal:  Int J Ophthalmol       Date:  2017-06-18       Impact factor: 1.779

6.  Exome-based mapping and variant prioritization for inherited Mendelian disorders.

Authors:  Daniel C Koboldt; David E Larson; Lori S Sullivan; Sara J Bowne; Karyn M Steinberg; Jennifer D Churchill; Aimee C Buhr; Nathan Nutter; Eric A Pierce; Susan H Blanton; George M Weinstock; Richard K Wilson; Stephen P Daiger
Journal:  Am J Hum Genet       Date:  2014-02-20       Impact factor: 11.025

Review 7.  Steroid-induced ocular hypertension/glaucoma: Focus on pharmacogenomics and implications for precision medicine.

Authors:  M Elizabeth Fini; Stephen G Schwartz; Xiaoyi Gao; Shinwu Jeong; Nitin Patel; Tatsuo Itakura; Marianne O Price; Francis W Price; Rohit Varma; W Daniel Stamer
Journal:  Prog Retin Eye Res       Date:  2016-09-22       Impact factor: 21.198

8.  Molecular Findings in Families with an Initial Diagnose of Autosomal Dominant Retinitis Pigmentosa (adRP).

Authors:  Stephen P Daiger; Sara J Bowne; Lori S Sullivan; Kari Branham; Dianna K Wheaton; Kaylie D Jones; Cheryl E Avery; Elizabeth D Cadena; John R Heckenlively; David G Birch
Journal:  Adv Exp Med Biol       Date:  2018       Impact factor: 2.622

9.  MUTYH promotes oxidative microglial activation and inherited retinal degeneration.

Authors:  Shunji Nakatake; Yusuke Murakami; Yasuhiro Ikeda; Noriko Morioka; Takashi Tachibana; Kohta Fujiwara; Noriko Yoshida; Shoji Notomi; Toshio Hisatomi; Shigeo Yoshida; Tatsuro Ishibashi; Yusaku Nakabeppu; Koh-Hei Sonoda
Journal:  JCI Insight       Date:  2016-09-22

Review 10.  A challenge to the striking genotypic heterogeneity of retinitis pigmentosa: a better understanding of the pathophysiology using the newest genetic strategies.

Authors:  F S Sorrentino; C E Gallenga; C Bonifazzi; P Perri
Journal:  Eye (Lond)       Date:  2016-08-26       Impact factor: 3.775

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