Literature DB >> 23696647

Pyrococcus horikoshii TET2 peptidase assembling process and associated functional regulation.

Alexandre Appolaire1, Eva Rosenbaum, M Asunción Durá, Matteo Colombo, Vincent Marty, Marjolaine Noirclerc Savoye, Anne Godfroy, Guy Schoehn, Eric Girard, Frank Gabel, Bruno Franzetti.   

Abstract

Tetrahedral (TET) aminopeptidases are large polypeptide destruction machines present in prokaryotes and eukaryotes. Here, the rules governing their assembly into hollow 12-subunit tetrahedrons are addressed by using TET2 from Pyrococcus horikoshii (PhTET2) as a model. Point mutations allowed the capture of a stable, catalytically active precursor. Small angle x-ray scattering revealed that it is a dimer whose architecture in solution is identical to that determined by x-ray crystallography within the fully assembled TET particle. Small angle x-ray scattering also showed that the reconstituted PhTET2 dodecameric particle displayed the same quaternary structure and thermal stability as the wild-type complex. The PhTET2 assembly intermediates were characterized by analytical ultracentrifugation, native gel electrophoresis, and electron microscopy. They revealed that PhTET2 assembling is a highly ordered process in which hexamers represent the main intermediate. Peptide degradation assays demonstrated that oligomerization triggers the activity of the TET enzyme toward large polypeptidic substrates. Fractionation experiments in Pyrococcus and Halobacterium cells revealed that, in vivo, the dimeric precursor co-exists together with assembled TET complexes. Taken together, our observations explain the biological significance of TET oligomerization and suggest the existence of a functional regulation of the dimer-dodecamer equilibrium in vivo.

Entities:  

Keywords:  Aminopeptidase; Archaea; Biophysics; Peptidases; Proteasome; Protein Degradation; Protein Self-assembly; Proteolytic Enzymes; Structural Biology; X-ray Scattering

Mesh:

Substances:

Year:  2013        PMID: 23696647      PMCID: PMC3829341          DOI: 10.1074/jbc.M113.450189

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  52 in total

1.  Structure of the Bacillus subtilis D-aminopeptidase DppA reveals a novel self-compartmentalizing protease.

Authors:  H Remaut; C Bompard-Gilles; C Goffin; J M Frère; J Van Beeumen
Journal:  Nat Struct Biol       Date:  2001-08

2.  Multi-resolution contour-based fitting of macromolecular structures.

Authors:  Pablo Chacón; Willy Wriggers
Journal:  J Mol Biol       Date:  2002-03-29       Impact factor: 5.469

Review 3.  Protein degradation and protection against misfolded or damaged proteins.

Authors:  Alfred L Goldberg
Journal:  Nature       Date:  2003-12-18       Impact factor: 49.962

4.  Crystal structure of a dodecameric tetrahedral-shaped aminopeptidase.

Authors:  Santina Russo; Ulrich Baumann
Journal:  J Biol Chem       Date:  2004-09-16       Impact factor: 5.157

Review 5.  Aminopeptidases: towards a mechanism of action.

Authors:  A Taylor
Journal:  Trends Biochem Sci       Date:  1993-05       Impact factor: 13.807

6.  The structural and biochemical characterizations of a novel TET peptidase complex from Pyrococcus horikoshii reveal an integrated peptide degradation system in hyperthermophilic Archaea.

Authors:  M Asunción Durá; Eva Rosenbaum; Amédé Larabi; Frank Gabel; Frédéric M D Vellieux; Bruno Franzetti
Journal:  Mol Microbiol       Date:  2009-03-05       Impact factor: 3.501

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  Crystal structure of Aeromonas proteolytica aminopeptidase: a prototypical member of the co-catalytic zinc enzyme family.

Authors:  B Chevrier; C Schalk; H D'Orchymont; J M Rondeau; D Moras; C Tarnus
Journal:  Structure       Date:  1994-04-15       Impact factor: 5.006

9.  Using lanthanoid complexes to phase large macromolecular assemblies.

Authors:  Romain Talon; Richard Kahn; M Asunción Durá; Olivier Maury; Frédéric M D Vellieux; Bruno Franzetti; Eric Girard
Journal:  J Synchrotron Radiat       Date:  2010-11-05       Impact factor: 2.616

10.  Structure of the archaeal pab87 peptidase reveals a novel self-compartmentalizing protease family.

Authors:  Vanessa Delfosse; Eric Girard; Catherine Birck; Michaël Delmarcelle; Marc Delarue; Olivier Poch; Patrick Schultz; Claudine Mayer
Journal:  PLoS One       Date:  2009-03-05       Impact factor: 3.240

View more
  9 in total

1.  Characterization of a Glycyl-Specific TET Aminopeptidase Complex from Pyrococcus horikoshii.

Authors:  Hind Basbous; Alexandre Appolaire; Eric Girard; Bruno Franzetti
Journal:  J Bacteriol       Date:  2018-08-10       Impact factor: 3.490

2.  How metal cofactors drive dimer-dodecamer transition of the M42 aminopeptidase TmPep1050 of Thermotoga maritima.

Authors:  Raphaël Dutoit; Tom Van Gompel; Nathalie Brandt; Dany Van Elder; Jeroen Van Dyck; Frank Sobott; Louis Droogmans
Journal:  J Biol Chem       Date:  2019-10-14       Impact factor: 5.157

3.  Structure of the dodecamer of the aminopeptidase APDkam598 from the archaeon Desulfurococcus kamchatkensis.

Authors:  T E Petrova; E S Slutskaya; K M Boyko; O S Sokolova; T V Rakitina; D A Korzhenevskiy; M A Gorbacheva; E Y Bezsudnova; V O Popov
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-02-19       Impact factor: 1.056

4.  Proteolytic systems of archaea: slicing, dicing, and mincing in the extreme.

Authors:  Julie A Maupin-Furlow
Journal:  Emerg Top Life Sci       Date:  2018-11-14

5.  Heat-induced conformational changes of TET peptidase from crenarchaeon Desulfurococcus kamchatkensis.

Authors:  Elvira Slutskaya; Natalia Artemova; Sergey Kleymenov; Tatiana Petrova; Vladimir Popov
Journal:  Eur Biophys J       Date:  2015-07-29       Impact factor: 1.733

6.  Small-angle neutron scattering reveals the assembly mode and oligomeric architecture of TET, a large, dodecameric aminopeptidase.

Authors:  Alexandre Appolaire; Eric Girard; Matteo Colombo; M Asunción Durá; Martine Moulin; Michael Härtlein; Bruno Franzetti; Frank Gabel
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-10-23

7.  Uniqueness of models from small-angle scattering data: the impact of a hydration shell and complementary NMR restraints.

Authors:  Henry S Kim; Frank Gabel
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-01-01

8.  Tuned by metals: the TET peptidase activity is controlled by 3 metal binding sites.

Authors:  Matteo Colombo; Eric Girard; Bruno Franzetti
Journal:  Sci Rep       Date:  2016-02-08       Impact factor: 4.379

9.  Unraveling self-assembly pathways of the 468-kDa proteolytic machine TET2.

Authors:  Pavel Macek; Rime Kerfah; Elisabetta Boeri Erba; Elodie Crublet; Christine Moriscot; Guy Schoehn; Carlos Amero; Jerome Boisbouvier
Journal:  Sci Adv       Date:  2017-04-07       Impact factor: 14.136

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.