Literature DB >> 23695649

Phylogenetic models of molecular evolution: next-generation data, fit, and performance.

David Posada.   

Abstract

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Year:  2013        PMID： 23695649      PMCID： PMC4594774          DOI： 10.1007/s00239-013-9566-z

Source DB:  PubMed          Journal:  J Mol Evol        ISSN： 0022-2844            Impact factor:   2.395


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  6 in total

1.  Anchored hybrid enrichment for massively high-throughput phylogenomics.

Authors:  Alan R Lemmon; Sandra A Emme; Emily Moriarty Lemmon
Journal:  Syst Biol       Date:  2012-05-17       Impact factor: 15.683

2.  FastTree 2--approximately maximum-likelihood trees for large alignments.

Authors:  Morgan N Price; Paramvir S Dehal; Adam P Arkin
Journal:  PLoS One       Date:  2010-03-10       Impact factor: 3.240

3.  Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales.

Authors:  Brant C Faircloth; John E McCormack; Nicholas G Crawford; Michael G Harvey; Robb T Brumfield; Travis C Glenn
Journal:  Syst Biol       Date:  2012-01-09       Impact factor: 15.683

4.  BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics.

Authors:  Daniel L Ayres; Aaron Darling; Derrick J Zwickl; Peter Beerli; Mark T Holder; Paul O Lewis; John P Huelsenbeck; Fredrik Ronquist; David L Swofford; Michael P Cummings; Andrew Rambaut; Marc A Suchard
Journal:  Syst Biol       Date:  2011-10-01       Impact factor: 15.683

Review 5.  Bringing molecules back into molecular evolution.

Authors:  Claus O Wilke
Journal:  PLoS Comput Biol       Date:  2012-06-28       Impact factor: 4.475

6.  Next-generation phylogenomics.

Authors:  Cheong Xin Chan; Mark A Ragan
Journal:  Biol Direct       Date:  2013-01-22       Impact factor: 4.540
  6 in total
  6 in total

1.  Biological intuition in alignment-free methods: response to Posada.

Authors:  Mark A Ragan; Cheong Xin Chan
Journal:  J Mol Evol       Date:  2013-07-23       Impact factor: 2.395

2.  The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes.

Authors:  Todd J Treangen; Brian D Ondov; Sergey Koren; Adam M Phillippy
Journal:  Genome Biol       Date:  2014       Impact factor: 13.583

3.  Inferring phylogenies of evolving sequences without multiple sequence alignment.

Authors:  Cheong Xin Chan; Guillaume Bernard; Olivier Poirion; James M Hogan; Mark A Ragan
Journal:  Sci Rep       Date:  2014-09-30       Impact factor: 4.379

4.  Are 100 enough? Inferring acanthomorph teleost phylogeny using Anchored Hybrid Enrichment.

Authors:  Ron I Eytan; Benjamin R Evans; Alex Dornburg; Alan R Lemmon; Emily Moriarty Lemmon; Peter C Wainwright; Thomas J Near
Journal:  BMC Evol Biol       Date:  2015-06-14       Impact factor: 3.260

5.  k-mer Similarity, Networks of Microbial Genomes, and Taxonomic Rank.

Authors:  Guillaume Bernard; Paul Greenfield; Mark A Ragan; Cheong Xin Chan
Journal:  mSystems       Date:  2018-11-20       Impact factor: 6.496

6.  Alignment-Free Analysis of Whole-Genome Sequences From Symbiodiniaceae Reveals Different Phylogenetic Signals in Distinct Regions.

Authors:  Rosalyn Lo; Katherine E Dougan; Yibi Chen; Sarah Shah; Debashish Bhattacharya; Cheong Xin Chan
Journal:  Front Plant Sci       Date:  2022-04-26       Impact factor: 6.627
  6 in total

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